View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_30 (Length: 236)
Name: NF4727_low_30
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 14340702 - 14340486
Alignment:
| Q |
16 |
gttatatctctgttggttcaattggttttatcgactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnn-taatgaaaatcaa |
114 |
Q |
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| T |
14340702 |
gttatatctccgttggttcaattgtttttatcgactcaacc-atgattgaaccagatgacatgcaagtgttgaaaaaggaaaaaaaataatgaaaatcaa |
14340604 |
T |
|
| Q |
115 |
ttaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
14340603 |
ttaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaatcgccaaacttgataataatgcatcaacgaggcttaatt |
14340504 |
T |
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| Q |
215 |
tctttggttgctaattat |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
14340503 |
tctttggttgctaattat |
14340486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 3601822 - 3601608
Alignment:
| Q |
16 |
gttatatctctgttggttcaattggttttatcgactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnntaatgaaaatcaat |
115 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3601822 |
gttatatctccgttgtttcaattggttttatcgactcaacc-atgattgaaccagatgaca----agtgttgaaaaaggaaaaaa-taatgaaaatcaat |
3601729 |
T |
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| Q |
116 |
taaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaattt |
215 |
Q |
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| T |
3601728 |
taaaccaataccggttcaacttggttcaatcatactacaatgtaactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaattt |
3601629 |
T |
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| Q |
216 |
ctttggttgctaattattacc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
3601628 |
ctttggttgctaattattacc |
3601608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 3590816 - 3590710
Alignment:
| Q |
103 |
aatgaaaatcaattaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaa |
202 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |||| |||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
3590816 |
aatgaaaatcaattaaaccaataccggttcaacttagttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaacttaataataatgtatcaa |
3590717 |
T |
|
| Q |
203 |
caaggct |
209 |
Q |
| |
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||||||| |
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| T |
3590716 |
caaggct |
3590710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 3568732 - 3568624
Alignment:
| Q |
114 |
attaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
213 |
Q |
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|||||||||||| |||| ||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568732 |
attaaaccaatagatgttcaacttggtgcaatcatactgcaatgtaaccgtaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
3568633 |
T |
|
| Q |
214 |
ttctttggt |
222 |
Q |
| |
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||||||||| |
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|
| T |
3568632 |
ttctttggt |
3568624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 3590887 - 3590838
Alignment:
| Q |
26 |
tgttggttcaattggttttatcgactcaacccatgattgaaccagatgaca |
76 |
Q |
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||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
3590887 |
tgttggttcgattggttttatcggctcaa-ccatgattgaaccagatgaca |
3590838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 1409118 - 1409071
Alignment:
| Q |
127 |
cggttccacttggttcaatcatactacaatataactggaatcaaacca |
174 |
Q |
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|||||| |||||||||||||||||| |||||||| |||||||||||| |
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| T |
1409118 |
cggttcaacttggttcaatcatactgcaatataatcggaatcaaacca |
1409071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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