View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_4 (Length: 541)
Name: NF4727_low_4
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 6170619 - 6170093
Alignment:
| Q |
1 |
caagctgtcacaacttgtgtctgaactcccaacaacttaactaagtttgtgtttgttttggcgtttcaccacacgtttgatagctttggaaattgataat |
100 |
Q |
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| T |
6170619 |
caagctgtcacaacttgtgtctgaactcccaacaacttaactaagtttgtgtttgttttggcgtttcaccacatgtttgatagctttggaaattgataat |
6170520 |
T |
|
| Q |
101 |
agagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataagctaataaaataggaacacattaaaaaatatccacatcaa |
200 |
Q |
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| T |
6170519 |
agagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataggctaataaaataggaacacattaaaaaatatccacatcaa |
6170420 |
T |
|
| Q |
201 |
ttttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctattcgaagaaacaaatcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170419 |
ttttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctattcgaagaaacaaatcaatt |
6170320 |
T |
|
| Q |
301 |
aagatcaatttcattacaaatgaagnnnnnnngataattactccctttgtccttgattataaacacctatcatgtttttattttctattcaaatatactc |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170319 |
aagatcaatttcattacaaatgaagaaaaaaagataattactccctttgtccttgattataaacacctatcatgtttttattttctattcaaatatactc |
6170220 |
T |
|
| Q |
401 |
cctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagata |
500 |
Q |
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| T |
6170219 |
cctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgtta-tcaaaatgattaagttcgaagtggtaactgccaaaagata |
6170121 |
T |
|
| Q |
501 |
tcgatctttgagattgttgttggtgatg |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
6170120 |
tcgatctttgagattgttgttggtgatg |
6170093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 528
Target Start/End: Complemental strand, 6187142 - 6187039
Alignment:
| Q |
426 |
acaatttgataaattgtttcaa-ttagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttggt |
524 |
Q |
| |
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||||||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||||| || | |||| |||| || ||||| |||||||||||| |
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| T |
6187142 |
acaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatattgttgttggt |
6187043 |
T |
|
| Q |
525 |
gatg |
528 |
Q |
| |
|
|||| |
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|
| T |
6187042 |
gatg |
6187039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 47336553 - 47336509
Alignment:
| Q |
75 |
gtttgatagctttggaaattgataatagagaagctacaaattgta |
119 |
Q |
| |
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|
| T |
47336553 |
gtttgagagccttggaaattgataatagagaagctacaaattgta |
47336509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 22179225 - 22179177
Alignment:
| Q |
74 |
cgtttgatagctttggaaattgataatagagaagctacaaattgtagga |
122 |
Q |
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||||||| ||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
22179225 |
cgtttgagagccttgagaattgataatagagaagccacaaattgtagga |
22179177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 528
Target Start/End: Complemental strand, 4244086 - 4243983
Alignment:
| Q |
426 |
acaatttgataaattgtttcaatt-agcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttggt |
524 |
Q |
| |
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||||||||||||||||| |||| | ||||||| |||||||| ||||| ||||| ||||| ||| |||||| |||| || || || |||||||||||| |
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| T |
4244086 |
acaatttgataaattgtctcaagtgagcaatgatattcaaattgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatattgttgttggt |
4243987 |
T |
|
| Q |
525 |
gatg |
528 |
Q |
| |
|
|||| |
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|
| T |
4243986 |
gatg |
4243983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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