View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_6 (Length: 479)
Name: NF4727_low_6
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 152 - 470
Target Start/End: Complemental strand, 1523485 - 1523168
Alignment:
| Q |
152 |
tagaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggatgactttatgacaattatctatttatgtgataaccataagatgaga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1523485 |
tagaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggatgactttatgacaattatctatttatgtgataaccataatatgaga |
1523386 |
T |
|
| Q |
252 |
atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacgtagaggatgaaggtgaaatattcattagatcatgca |
351 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1523385 |
atgaataaaggagaaaattataccttgttcttaccacaacaatacaaaattagcttttcatacgtagaggatgaaggtgaaatattcattagatcatgca |
1523286 |
T |
|
| Q |
352 |
aattctcaatctcttttatgagatgcacaatcttgaaattaccaacaatcgatataagaaaatttctaa-taaaaagattgtaacataaatgcatactct |
450 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||| || |
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| T |
1523285 |
aattctcaatctcttttatgagatgctcaaccttgaaattaccaacaaacgatataagaaaatttctaagaaaaaaaattgta--ataaatgcatacact |
1523188 |
T |
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| Q |
451 |
gcaaaacatgtttgatgatg |
470 |
Q |
| |
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||||||||||||| |||||| |
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| T |
1523187 |
gcaaaacatgttttatgatg |
1523168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 155 - 438
Target Start/End: Original strand, 8519425 - 8519709
Alignment:
| Q |
155 |
aatttgatctaaagggagcaaacgtcttgttatagttttccttctcat---ggatgactttatgacaattatctatttatgtgataaccataagatgaga |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||| |
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| T |
8519425 |
aatttgatctaaagggagcaaacgtcttgttatcgttttccttctcatcatggatgactttatgacaattacttaatt----gataaccataatatgaga |
8519520 |
T |
|
| Q |
252 |
atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacgtagaggatgaaggtgaaatattcattagatcatgca |
351 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| |||| ||| | |||| |
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| T |
8519521 |
atgaataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacaaagagaatgtaggtgaaattttcaacagaccgtgca |
8519620 |
T |
|
| Q |
352 |
aattctcaatctcttttatgagatgcacaatcttgaaattaccaacaatcgatataagaaaatttctaataaaaag--attgtaacata |
438 |
Q |
| |
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||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |
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| T |
8519621 |
aattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgatataagaaaatttctaagaaaaagaaattgtaacata |
8519709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 155 - 438
Target Start/End: Original strand, 8492852 - 8493136
Alignment:
| Q |
155 |
aatttgatctaaagggagcaaacgtcttgttatagttttccttctcat---ggatgactttatgacaattatctatttatgtgataaccataagatgaga |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||| |
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| T |
8492852 |
aatttgatctaaagggagcaaacgtcttgttatcgttttccttctcatcatggatgactttatgacaattacttaatt----gataaccataatatgaga |
8492947 |
T |
|
| Q |
252 |
atggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacgtagaggatgaaggtgaaatattcattagatcatgca |
351 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| |||| | | | |||| |
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| T |
8492948 |
atgaataaaggagaaaattataccttgttcttaccacagcaatacaaaattagcttttcatacaaagagaatgtaggtgaaattttcaacaaaccgtgca |
8493047 |
T |
|
| Q |
352 |
aattctcaatctcttttatgagatgcacaatcttgaaattaccaacaatcgatataagaaaatttctaataaaaag--attgtaacata |
438 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |
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| T |
8493048 |
aattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgatataagaaaatttctaagaaaaagaaattgtaacata |
8493136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 1523629 - 1523543
Alignment:
| Q |
5 |
cagattgcattacatgactggagggcatacagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1523629 |
cagattgcattacatgactggagggcatacagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt |
1523543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 8492704 - 8492790
Alignment:
| Q |
5 |
cagattgcattacatgactggagggcatacagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || ||||||| |||||||||| ||||||| |
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| T |
8492704 |
cagattgcattacatgactggagggcataaagtatgcttcacacattttatcaacaatattaatagctacatccacctgcataagtt |
8492790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 8519277 - 8519363
Alignment:
| Q |
5 |
cagattgcattacatgactggagggcatacagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagtt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||| || || ||||||| |||||||||| ||||||| |
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| T |
8519277 |
cagattgcattacatgactggagggcataaagtatgcttcacacattttatcaataatattaatagctacatccacctgcataagtt |
8519363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 153 - 438
Target Start/End: Complemental strand, 15173241 - 15172955
Alignment:
| Q |
153 |
agaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggatgactttatgacaattatctatttatgtgataaccataagatgagaa |
252 |
Q |
| |
|
|||||||||| | ||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||| ||| || |||||||| || ||||||| |
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|
| T |
15173241 |
agaatttgatatggagggagcaaccatcttgttatcgttttccttctcatggatgtctttatgacaattat--attgatttgataaccgtattatgagaa |
15173144 |
T |
|
| Q |
253 |
tggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacgtagaggatgaaggtgaaatattcattagatcatgcaa |
352 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||| | ||| |||| | || | | ||||||| |
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|
| T |
15173143 |
tgaataaaggagaaaattataccttgtccttgccacagcaatacaaaattagcttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaa |
15173044 |
T |
|
| Q |
353 |
attctcaatctcttttatgagatgcacaatcttgaaattaccaacaatcgatataagaaaatttcta---ataaaaagattgtaacata |
438 |
Q |
| |
|
||||||||||| |||||||| |||| ||| ||||||||||||||||| | ||||||||| ||| ||| | ||||||||||||||||| |
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|
| T |
15173043 |
attctcaatcttttttatgatatgctcaaccttgaaattaccaacaaaccatataagaagattgctaaggaaaaaaagattgtaacata |
15172955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 15173387 - 15173302
Alignment:
| Q |
5 |
cagattgcattacatgactggagggcatacagaatgcttcacacattttatcaacaacataaatagctgcatccacctgaataagt |
90 |
Q |
| |
|
||||||||||||||||||| ||| || || || |||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
15173387 |
cagattgcattacatgactagagagcgtaaagcctgcttcacacattttatcaacaacatcaatagctacatccacctgcataagt |
15173302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 15168394 - 15168336
Alignment:
| Q |
264 |
gaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacgtagagga |
322 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||||| ||||||| ||||||| |
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|
| T |
15168394 |
gaaaattataccttgtccttggcacaacaatacaaaattagcttttcatacatagagga |
15168336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 15168579 - 15168533
Alignment:
| Q |
44 |
cacacattttatcaacaacataaatagctgcatccacctgaataagt |
90 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||| |||||| |
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|
| T |
15168579 |
cacacattttatcaacagcatgaatagctacatccacctgcataagt |
15168533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 31461950 - 31461884
Alignment:
| Q |
249 |
agaatggataaaggagaaaattataccttgttcttaccacagcaatacaaaattagctgttcatacg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
31461950 |
agaatggataaaggagaaaattataccttgtgcataccacagcaatacagaatgagcttttcatacg |
31461884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 55809372 - 55809425
Alignment:
| Q |
153 |
agaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggat |
206 |
Q |
| |
|
|||||| ||| | ||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
55809372 |
agaattcgatatgaagggagcaaacgtcctgttatcgttttccttctcatggat |
55809425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 29709597 - 29709544
Alignment:
| Q |
153 |
agaatttgatctaaagggagcaaacgtcttgttatagttttccttctcatggat |
206 |
Q |
| |
|
|||||| ||| | ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
29709597 |
agaattcgatatgaagggagcaaacgtcctgttatcgttttccttctcatggat |
29709544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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