View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_7 (Length: 455)
Name: NF4727_low_7
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 2409108 - 2408692
Alignment:
| Q |
20 |
gtatatgtgtttgggcagtgacaggtagcaaactgttcatatgggattataaacttgatggtatactccannnnnnnatccaacaacatatgaacctaga |
119 |
Q |
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| T |
2409108 |
gtatatgtgtttgggcagtgacaggtagcaaagtgttcatatgggatgatgaacttgatggtatactccatgtttttatccaacaacatatgaacctaga |
2409009 |
T |
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| Q |
120 |
aatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttttccatgcacaatttcga |
219 |
Q |
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| T |
2409008 |
aatcactttgatggacaatgacaagttggaaaatattcat-aagggaatcaaaatacctcaaacacaaatatttcacttgttttccatgcacaatttcga |
2408910 |
T |
|
| Q |
220 |
ttgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagcttgcaactctttattccc |
319 |
Q |
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| T |
2408909 |
ttgttgatgagcttcaaagcacggaaatgatttagcaccaaagaacattatacatcacttcttcttccttgccgtcacaagcttgcaactctttattccc |
2408810 |
T |
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| Q |
320 |
ctttggatttctatttctcaaaaccctaaaatgcagggacgaaaataaaaaggatgtttttggggaaaaaaccaattgccacgtgtgactcaatcacttc |
419 |
Q |
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| T |
2408809 |
ctttggatttctatttctcaaaaccctaaaatgcaggggcgaaaat-aaaaggatgttttgggggaaaaaattgattgccacgtgtgactcaatcacttc |
2408711 |
T |
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| Q |
420 |
aatctcacatccccttcat |
438 |
Q |
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| T |
2408710 |
aatctcacatccccttcat |
2408692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 103 - 438
Target Start/End: Complemental strand, 2412485 - 2412153
Alignment:
| Q |
103 |
caacatatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttt |
202 |
Q |
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|||||| |||||| | ||||||||||||| | || |||||||||| ||| ||||||| ||||||||||||||||||||||| |||| ||| ||||||| | |
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| T |
2412485 |
caacatctgaaccaataaatcactttgattggcactgacaagttgcaaactattcat-aagggaatcaaaatacctcaaacacaaagattccacttgtct |
2412387 |
T |
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| Q |
203 |
tccatgcacaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagct |
302 |
Q |
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|| ||||| |||| ||| ||||||||||| |||| | | |||||||||||||| ||||| || |||||| ||||||||||| || ||||||||| |
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| T |
2412386 |
tcg-tgcacgattttgatctttgatgagctttgaagcgctaaattgatttagcaccaacgaacaataaacatcatttcttcttcctcaccatcacaagct |
2412288 |
T |
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| Q |
303 |
tgcaactctttattcccctttggatttctatttctcaaaaccctaaaatgcagggacgaaaataaaaaggatgtttttggggaaaaaaccaattgccacg |
402 |
Q |
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| T |
2412287 |
cgcaactctttattcccctttgactctttatttctcataaccctaaaatgcagggacaaaaatgaaaaatgggttttt-gggaaaataccgattgccaca |
2412189 |
T |
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| Q |
403 |
tgtgactcaatcacttcaatctcacatccccttcat |
438 |
Q |
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|||||||| ||| | | |||||||||||||||||| |
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| T |
2412188 |
tgtgactcgatcgcctacatctcacatccccttcat |
2412153 |
T |
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