View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4727_low_9 (Length: 417)
Name: NF4727_low_9
Description: NF4727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4727_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 202 - 407
Target Start/End: Complemental strand, 35774220 - 35774016
Alignment:
| Q |
202 |
ttagaataatctctttttggtaaaatacctgcaataatcagccatattacataccaacttagcttatacctcctttcgnnnnnnnnnnnnn-cttagctt |
300 |
Q |
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| T |
35774220 |
ttagaataatctctttttggtaaaatacctgcaataatcagccacattacataccaacttagcttatacctcctttcgaaagaaaaaaaaaacttagctt |
35774121 |
T |
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| Q |
301 |
atacctgacaagccaacttcaattaaccgcgtccttctcaccaaactcttcccatataagatttaatcatgttaatttattaacttcaaaatatatatag |
400 |
Q |
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| T |
35774120 |
atacttgacaagccaacttcaattaaccgcgtccttctcacc-aactcttcccatataagatttaatcatgttaatttatt-acttcaaaatatatatag |
35774023 |
T |
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| Q |
401 |
gcctatg |
407 |
Q |
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||||||| |
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| T |
35774022 |
gcctatg |
35774016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10293650 - 10293566
Alignment:
| Q |
1 |
tagtctagtccattaggtgggaggttgggtatctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttc |
85 |
Q |
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| T |
10293650 |
tagtctagtccattaggtgggaggttgggtagctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttc |
10293566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 10301520 - 10301431
Alignment:
| Q |
2 |
agtctagtccattaggtgggaggttgggtatctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttctaacaa |
91 |
Q |
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| T |
10301520 |
agtctggtccatttggtggggggttgggtagctcaatcggttggagttaaagggtagggagctggaggtccaaagttcaagttctgacaa |
10301431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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