View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4728-Insertion-1 (Length: 965)

Name: NF4728-Insertion-1
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4728-Insertion-1
NF4728-Insertion-1
[»] chr6 (6 HSPs)
chr6 (8-582)||(14368093-14368689)
chr6 (589-965)||(14367554-14367934)
chr6 (543-609)||(14368017-14368083)
chr6 (543-624)||(16509327-16509407)
chr6 (543-595)||(26318380-26318432)
chr6 (543-582)||(17155444-17155483)
[»] chr8 (17 HSPs)
chr8 (8-399)||(26463842-26464254)
chr8 (742-965)||(26463253-26463476)
chr8 (398-499)||(26463709-26463810)
chr8 (543-624)||(34552608-34552688)
chr8 (543-624)||(38198166-38198246)
chr8 (544-629)||(10028151-10028236)
chr8 (546-623)||(31543192-31543269)
chr8 (543-621)||(12022260-12022338)
chr8 (545-619)||(28083793-28083867)
chr8 (545-619)||(37032430-37032504)
chr8 (563-654)||(26463536-26463627)
chr8 (544-623)||(16652996-16653075)
chr8 (544-619)||(40990302-40990377)
chr8 (544-623)||(41103624-41103703)
chr8 (543-624)||(24243164-24243245)
chr8 (545-622)||(27483608-27483685)
chr8 (543-596)||(27487064-27487117)
[»] chr2 (9 HSPs)
chr2 (543-624)||(21662326-21662406)
chr2 (543-611)||(41778832-41778900)
chr2 (543-624)||(886964-887043)
chr2 (546-623)||(31086553-31086629)
chr2 (545-609)||(21745249-21745313)
chr2 (545-624)||(18811375-18811453)
chr2 (548-623)||(36347663-36347738)
chr2 (544-582)||(31795887-31795925)
chr2 (587-624)||(14187120-14187157)
[»] chr1 (12 HSPs)
chr1 (543-624)||(27739098-27739178)
chr1 (548-619)||(25541939-25542008)
chr1 (544-623)||(8529846-8529925)
chr1 (544-623)||(30010379-30010458)
chr1 (545-623)||(51597715-51597793)
chr1 (548-629)||(49832588-49832669)
chr1 (543-620)||(51303693-51303769)
chr1 (544-623)||(40095051-40095131)
chr1 (543-593)||(1085607-1085657)
chr1 (550-624)||(1089201-1089274)
chr1 (543-593)||(33643345-33643395)
chr1 (546-603)||(42742430-42742486)
[»] chr4 (13 HSPs)
chr4 (544-623)||(47433826-47433906)
chr4 (543-619)||(47694401-47694476)
chr4 (543-624)||(55510216-55510297)
chr4 (544-619)||(26166988-26167063)
chr4 (543-624)||(41227529-41227607)
chr4 (543-621)||(43961459-43961537)
chr4 (543-612)||(27735803-27735872)
chr4 (543-619)||(37711194-37711270)
chr4 (543-624)||(11842355-11842434)
chr4 (543-593)||(56135826-56135876)
chr4 (543-624)||(18516588-18516668)
chr4 (545-618)||(35248738-35248811)
chr4 (544-609)||(36151637-36151702)
[»] chr3 (8 HSPs)
chr3 (543-623)||(54996797-54996874)
chr3 (543-623)||(46204933-46205013)
chr3 (544-623)||(14898023-14898102)
chr3 (587-624)||(34579859-34579896)
chr3 (544-623)||(651778-651857)
chr3 (587-629)||(18086021-18086063)
chr3 (542-624)||(25179940-25180022)
chr3 (543-624)||(49815468-49815548)
[»] chr7 (9 HSPs)
chr7 (543-623)||(33655225-33655305)
chr7 (548-624)||(33224136-33224211)
chr7 (543-623)||(41497074-41497154)
chr7 (543-582)||(18063678-18063717)
chr7 (544-619)||(24970283-24970358)
chr7 (543-582)||(48093981-48094020)
chr7 (543-621)||(33519097-33519175)
chr7 (544-597)||(22163227-22163280)
chr7 (544-597)||(22221935-22221988)
[»] chr5 (4 HSPs)
chr5 (27-113)||(15316837-15316923)
chr5 (544-623)||(10072765-10072844)
chr5 (587-624)||(34980971-34981008)
chr5 (567-624)||(40644084-40644140)
[»] scaffold0294 (1 HSPs)
scaffold0294 (545-580)||(15353-15388)


Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 14368689 - 14368093
Alignment:
Q  8 atatttttgtccattataataggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaag 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  14368689 atatttttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacactggagttgaatacagtagcgaacaaat 14368590  T
Q  108 gaaacagtgagaaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaagttttgaaa----------------- 190  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                     
T  14368589 gaatcagtgaggaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaatttttgaaaattgtcttgtcttgttg 14368490  T
Q  191 -----tttggtagctgttattgtcgacagcatatggattgttttggacatgcatgccctgtaatctagaaaagtttattgtgcatctattttgttgattc 285  Q
         ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  14368489 tgtaatttggtagctgttattgtcgacaacatatggattgttttggacatgcatgccctttaatctagaaaagtttattgtgcatctattttgttgatta 14368390  T
Q  286 caattctttcttggcaatcaatgactattttggatttaaaccagttgaatgaaatgaaagagacgattcatatgcatgttagatacctctcccaatttga 385  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368389 caattctttcttggcaaacagtgactattttggatttaaaccagttgaatgaaatgaaagagacgattcatatgcatgttagatacctctcccaatttga 14368290  T
Q  386 gctttaatattgttctagatttgcattgtaagaagagaataaatttattttagaattgacattcttttgagagtactacatcctaagggtctgtttggga 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368289 gctttaatattgttctagatttgcattgtaagaagagaataaatttattttagaattgacattcttttgagagtactacatcctaagggtctgtttggga 14368190  T
Q  486 gaggattttggaagggttttggaggactaagattaattgattttaaatgtctgtttgtgatcatataatacttcaaccacacttaattgattttaaa 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14368189 gaggattttggaagggttttggaggactaagattaattgattttaaatgtctgtttgtgatcatataatacttcgaccacacttaattgattttaaa 14368093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 589 - 965
Target Start/End: Complemental strand, 14367934 - 14367554
Alignment:
Q  589 ttttataatgtctataatttaaaagagaaaagtaagatctctctgaaactaaaatcaacaaaccaattttannnnnnnnn--------aggaatcaagca 680  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||                  |||||||||       
T  14367934 ttttataatgtctataatttaaaagagaaaagtaagatctctccaaaactaaaatcaacaaaccaatttttttttttatttttttttgaggaatcaa--- 14367838  T
Q  681 acaaaccaatttctttcggtttaaaatgacaaattggaccaaaccaagaacaagttaatttccagtgccacttcgtctcatgtgaacaacctcagcacta 780  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14367837 -caaaccaatttctttcggtttaaaatgacaaattggaccaagccaagaacaagttaatttccagtgccacttcgtctcatgtgaacaacctcagcacta 14367739  T
Q  781 ctattttgagagttcatatttaaacctagttttttctatgcagcgttaagggtaacaagttggtctgatttaagtttgtgatggaaaataatccaaacca 880  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  14367738 ctattttgagagttcatatttaaacctagttttttctatgcagcgttaagggtaacaagttggtttgatttaagtttgtgatggaaaaaaatccaaacca 14367639  T
Q  881 ctagaaaaagatcggttttgttagattcaaaaatattttctctcatgaatttcaaactaaattgatgaagaacatgttggtttga 965  Q
    ||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14367638 ctaaaaaatcatcggttttgtttgattcaaaaatattttctctcatgaatttcaaactaaattgatgaagaacatgttggtttga 14367554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 14368083 - 14368017
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 609  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368083 tgatcatataatacttcgaccacacttaattgattttaaataagcattttataatgtctataattta 14368017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 16509407 - 16509327
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| ||||||| ||| ||||| || || ||||||||| ||||| ||||| |||| |||||||||||    
T  16509407 tgatcatataatacttcaatcacacttgatttatttttaa-aaacattttatagtgtctttaattcaaaaaagaaaagtaag 16509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 26318432 - 26318380
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttata 595  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||||    
T  26318432 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttata 26318380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Complemental strand, 17155483 - 17155444
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaa 582  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  17155483 tgatcatataatacttaaatcacacttaattgattttaaa 17155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 26464254 - 26463842
Alignment:
Q  8 atatttttgtccattataataggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaag 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  26464254 atatttttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacgctgaagttgaatacagtagcgaacaaaa 26464155  T
Q  108 gaaacagtgagaaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaagttttgaaa----------------- 190  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||                     
T  26464154 gaaacagtgaggaagggaacagattgtagatatctagaaccattgaaaaggttgatttccaaaatt-aagggaaattttgaaaattgtcttgtcttgttc 26464056  T
Q  191 -----tttggtagctgttattgtcgacagcatatggattgttttggacatgcatgccctgtaatctagaaaagtttattgtgcatctattttgttgattc 285  Q
         ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26464055 tgtaatttggtagctgttattgtcgacaacatatggattgttttggacatgcatgccctggaatctagaaaagtttattgtgcatctattttgttgattc 26463956  T
Q  286 caattctttcttggcaatcaatgactattttggatttaaaccagttgaatgaaatgaaagagacgattcatatgcatgttagatacctctcccaatttga 385  Q
    ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26463955 caattctttcttggcaaacactgactattttagatttaaaccagttgaatgaaatgaaagagacgattcatatgcatgttagatacctctctcaatttga 26463856  T
Q  386 gctttaatattgtt 399  Q
    ||||||||||||||    
T  26463855 gctttaatattgtt 26463842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 742 - 965
Target Start/End: Complemental strand, 26463476 - 26463253
Alignment:
Q  742 ccagtgccacttcgtctcatgtgaacaacctcagcactactattttgagagttcatatttaaacctagttttttctatgcagcgttaagg--gtaacaag 839  Q
    |||||| |||||  ||| ||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||  ||| | ||    
T  26463476 ccagtggcactttctctaatgtgaacaacctaagcactacttttttcagagttcatatttaaatctagttttttctatgcagcgttaagggtgtatcgag 26463377  T
Q  840 ttggtctgatttaagtttgtgatggaaaataatccaaaccactagaaaaagatcggttttgttagattcaaaaatattttctctcatgaatttcaaacta 939  Q
    ||||| || ||||||||| |||||| ||| ||||||||| |||| |||| ||| |||||  || |||||  || | ||||| |||||||||||||||||     
T  26463376 ttggtttggtttaagtttttgatgggaaaaaatccaaactactacaaaatgattggtttcatttgattc--aatttttttccctcatgaatttcaaactg 26463279  T
Q  940 aattgatgaagaacatgttggtttga 965  Q
    ||||||||||||||  ||||||||||    
T  26463278 aattgatgaagaacgagttggtttga 26463253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 398 - 499
Target Start/End: Complemental strand, 26463810 - 26463709
Alignment:
Q  398 ttctagatttgcattgtaagaagagaataaatttattttagaattgacattcttttgagagtactacatcctaagggtctgtttgggagaggattttgga 497  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  26463810 ttctagacttgcattgtaagaagagaataaatttattttagaattgacattcttttcagagtactacaacctaagggtctgtttgggaggggattttgga 26463711  T
Q  498 ag 499  Q
    ||    
T  26463710 ag 26463709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 34552688 - 34552608
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||||||||||||||  || ||||||| |||||||| || |||| |||| |||| |||||||||||||||||||||||    
T  34552688 tgatcatataatacttcaattacgcttaattaattttaaaaaa-cattatatagtgtcaataatttaaaagagaaaagtaag 34552608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 38198166 - 38198246
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| ||||||||||| |||||||| || || |||||| ||||| ||||||||||  ||||||||||    
T  38198166 tgatcatataatacttcaatcacacttaattcattttaaa-aaacactttatagtgtctgtaatttaaaaatgaaaagtaag 38198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 544 - 629
Target Start/End: Complemental strand, 10028236 - 10028151
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaagatctc 629  Q
    |||||||||| ||||||||||||||||||| |||||||| ||  || |||||  |||  |||||||||| |||||||||| |||||    
T  10028236 gatcatataagacttcaaccacacttaatttattttaaaaaaatatgttatatggtccgtaatttaaaaaagaaaagtaaaatctc 10028151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 546 - 623
Target Start/End: Original strand, 31543192 - 31543269
Alignment:
Q  546 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||| ||||||||||| |||||| | || ||| |||||  ||| ||||||||||| ||||||||||    
T  31543192 tcatataatacttcaatcacacttaatttattttagaaaaacatgttatatggtccataatttaaaaaagaaaagtaa 31543269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 543 - 621
Target Start/End: Original strand, 12022260 - 12022338
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 621  Q
    |||||||||||||||||||  |||||||||| |||||||| || ||||||| | ||||  |||||||||| | ||||||    
T  12022260 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgtccgtaatttaaaaaataaaagt 12022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 545 - 619
Target Start/End: Complemental strand, 28083867 - 28083793
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    ||||||||||||| ||| ||||||||||| |||||| | || ||| ||||| ||||| |||||||||| ||||||    
T  28083867 atcatataatactccaatcacacttaatttattttagagaaacatgttatattgtctgtaatttaaaaaagaaaa 28083793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 545 - 619
Target Start/End: Complemental strand, 37032504 - 37032430
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    |||||||||||||| || ||||||||||| |||||||| || ||| |||||  |||| |||||||||| ||||||    
T  37032504 atcatataatactttaatcacacttaatttattttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaa 37032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 563 - 654
Target Start/End: Complemental strand, 26463627 - 26463536
Alignment:
Q  563 cacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt-aagatctctctgaaactaaaatcaacaaaccaa 654  Q
    |||||||||||||||||||| |||||||| ||  |||  ||||||||||||||||| || || | ||||  ||||| ||||||||||||||||    
T  26463627 cacacttaattgattttaaa-aagcatttcatcgtgtacataatttaaaagagaaaggtaaacacctctgcgaaaccaaaatcaacaaaccaa 26463536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 16653075 - 16652996
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||| ||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  16653075 gatcatataatacttcaatcacacttgatttattttataaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 16652996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 619
Target Start/End: Original strand, 40990302 - 40990377
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    |||||||||||||||||| || |||||||| |||||||| || ||| |||||  |||  |||||||||| ||||||    
T  40990302 gatcatataatacttcaatcagacttaatttattttaaagaaacatgttatatagtccgtaatttaaaaaagaaaa 40990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 41103624 - 41103703
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |  | |||||||||| ||||||||||    
T  41103624 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcttgtaatttaaaaaagaaaagtaa 41103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 24243164 - 24243245
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| ||||||||||| |||| ||| ||  || | ||| ||||| ||||||| || || ||||||||    
T  24243164 tgatcatataatacttcaatcacacttaattaatttgaaaaaaagatctcatattgtctgtaatttagaaaaggaaagtaag 24243245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 622
Target Start/End: Complemental strand, 27483685 - 27483608
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagta 622  Q
    |||||||||||||||||  |||||| ||| |||| ||| || |||||||| || | | |||||||||| |||||||||    
T  27483685 atcatataatacttcaataacactttatttatttaaaaaaaacattttatgatatttgtaatttaaaatagaaaagta 27483608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 27487117 - 27487064
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataa 596  Q
    |||||||||||||||||||  ||||||||||| ||||| | || ||||||||||    
T  27487117 tgatcatataatacttcaataacacttaattggttttagaaaaacattttataa 27487064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 21662326 - 21662406
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| || ||||||||||||||||| || ||||||| | |||||||| |||||||||||||||||||    
T  21662326 tgatcatataatacttcaatcaaacttaattgattttaaa-aaacattttacagtgtctatactttaaaagagaaaagtaag 21662406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 41778900 - 41778832
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaa 611  Q
    ||||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||| ||||||||||    
T  41778900 tgatcatataatacttcaatcacacttaatttattttaaaaaaacattttatactgtccataatttaaa 41778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 887043 - 886964
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||  | |||||||||| |||||||||||    
T  887043 tgatcatataatacttcaatcacacataatttattttaaaaaagcattttatattg--tgtaatttaaaaaagaaaagtaag 886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 546 - 623
Target Start/End: Complemental strand, 31086629 - 31086553
Alignment:
Q  546 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    ||||||| |||||||| |||||||| ||||||||||| || ||||||| ||| | | |||||||||||||||||||||    
T  31086629 tcatatactacttcaatcacacttagttgattttaaa-aaacattttaaaatatatgtaatttaaaagagaaaagtaa 31086553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 21745249 - 21745313
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 609  Q
    ||||||||||| |||||||||||||||||||||||| | ||  |||| ||| ||| |||||||||    
T  21745249 atcatataatagttcaaccacacttaattgattttagaaaaatatttaatagtgtttataattta 21745313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 18811453 - 18811375
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||| ||||| ||||||||||| |||||||| || || |||||| |  || |||||||||| |||||||||||    
T  18811453 atcatataatatttcaatcacacttaatttattttaaa-aaacactttatagttactgtaatttaaaaaagaaaagtaag 18811375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 623
Target Start/End: Original strand, 36347663 - 36347738
Alignment:
Q  548 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  36347663 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 36347738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 582
Target Start/End: Original strand, 31795887 - 31795925
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaa 582  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  31795887 gatcatataatacttcaatcacacttaatttattttaaa 31795925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 14187157 - 14187120
Alignment:
Q  587 cattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  14187157 cattttataatgtttataatttaaaaaagaaaagtaag 14187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 27739178 - 27739098
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||  |||||||||| |||||||||||||||||||| || ||||||||| | | ||||||||||||||||||||||||    
T  27739178 tgatcattaaatacttcaatcacacttaattgattttaaa-aaacattttatagtatttataatttaaaagagaaaagtaag 27739098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 548 - 619
Target Start/End: Complemental strand, 25542008 - 25541939
Alignment:
Q  548 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    |||||| ||| |||||||||||||||||||||||| |   |||||||| |||||||||||||||||||||||    
T  25542008 atataacactccaaccacacttaattgattttaaaaat--attttatagtgtctataatttaaaagagaaaa 25541939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 8529925 - 8529846
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||||||| |||| ||| || ||| |||||  || | |||||||||| ||||||||||    
T  8529925 gatcatataatacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaatttaaaaaagaaaagtaa 8529846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 30010458 - 30010379
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||||||||||||||| |||||| | || ||| |||||  |||  |||||||||  ||||||||||    
T  30010458 gatcatataatacttcaaccacacttaatttattttagaaaaacatgttatatagtccgtaatttaaacaagaaaagtaa 30010379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 545 - 623
Target Start/End: Complemental strand, 51597793 - 51597715
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||| |||||  |||  | |||||||| ||||||||||    
T  51597793 atcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtgatttaaaaaagaaaagtaa 51597715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 629
Target Start/End: Complemental strand, 49832669 - 49832588
Alignment:
Q  548 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaagatctc 629  Q
    |||||||||||||| |||||||| || ||||| || || || |||||| | ||| |||||||||| ||||||||||| ||||    
T  49832669 atataatacttcaatcacacttattttatttttaaaaaacactttatattatctgtaatttaaaaaagaaaagtaagctctc 49832588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 620
Target Start/End: Original strand, 51303693 - 51303769
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaag 620  Q
    ||||||||||||| ||||| ||||||||||||| |||||| || ||||||||| |||  ||||||| ||| |||||||    
T  51303693 tgatcatataatagttcaatcacacttaattga-tttaaaaaaacattttatagtgttcataattttaaaaagaaaag 51303769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 40095051 - 40095131
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgatttta-aataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| |||||  |||| ||||||||||  |||||||||    
T  40095051 gatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatatagtctgtaatttaaaaacgaaaagtaa 40095131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 1085607 - 1085657
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 593  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  1085607 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 1085657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 550 - 624
Target Start/End: Complemental strand, 1089274 - 1089201
Alignment:
Q  550 ataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||| || ||||||| ||||||| |||| || ||||||||| || || |||| |||||||||||||||||    
T  1089274 ataatactttaaacacacttgattgattctaaaaaa-cattttatagtggctttaatctaaaagagaaaagtaag 1089201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 33643395 - 33643345
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 593  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  33643395 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 33643345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 603
Target Start/End: Original strand, 42742430 - 42742486
Alignment:
Q  546 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctat 603  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||||| |||||||    
T  42742430 tcatatagtacttcaatcacacttaatttattttaaa-aaacattttatagtgtctat 42742486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 47433826 - 47433906
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat-gtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||||||| |||||||| || ||| |||| || |||| |||||||||| ||||||||||    
T  47433826 gatcatataatacttcaatcacacttaatttattttaaaaaaacatgttattatagtctgtaatttaaaaaagaaaagtaa 47433906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 47694476 - 47694401
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    ||||||||||||||||||||| ||||| |||||||||| | |||||||| ||| ||||  |||||||||||||||||    
T  47694476 tgatcatataatacttcaaccgcacttgattgattttaga-aagcatttcatagtgtccgtaatttaaaagagaaaa 47694401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 55510297 - 55510216
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||  ||||||||||| |||||||| || ||||||| | ||||| ||| ||||||  ||||||||||    
T  55510297 tgatcatataatacttcagtcacacttaatttattttaaaaaaacattttacattgtctttaaattaaaaatgaaaagtaag 55510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 544 - 619
Target Start/End: Complemental strand, 26167063 - 26166988
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||| |||||||||| ||||||    
T  26167063 gatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtctgtaatttaaaaaagaaaa 26166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 41227607 - 41227529
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| |||||||||||  |||||||| | ||||||||| |||  ||||||||||| ||| |||||||    
T  41227607 tgatcatataatacttcaatcacacttaatt--ttttaaatga-cattttatattgttcataatttaaaaaagagaagtaag 41227529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 543 - 621
Target Start/End: Complemental strand, 43961537 - 43961459
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 621  Q
    |||||||||||||||||||  |||||||||| |||||||| || ||||||| | |||  ||||||||||| | ||||||    
T  43961537 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcataatttaaaaaataaaagt 43961459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 612
Target Start/End: Complemental strand, 27735872 - 27735803
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaa 612  Q
    ||||||||||||||||||| ||||||||||| |||||||| || ||| |||||  |||  ||||||||||    
T  27735872 tgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaa 27735803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 37711270 - 37711194
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||    
T  37711270 tgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaagaaaa 37711194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 11842434 - 11842355
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| || |||||||| ||||  || ||  |||||||| ||||| |||||| ||| |||||||||||    
T  11842434 tgatcatataatacttcaatcagacttaattcattt--aaaaaatattttatagtgtctgtaatttgaaaaagaaaagtaag 11842355  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 56135876 - 56135826
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 593  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  56135876 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 56135826  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 18516588 - 18516668
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||| ||||| |||||| ||||||||||| |||||  | || ||||||||| |||  ||||||||||| |||||||||||    
T  18516588 tgatcacataatgcttcaatcacacttaattcattttttaaaaacattttatagtgttcataatttaaaa-agaaaagtaag 18516668  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 618
Target Start/End: Complemental strand, 35248811 - 35248738
Alignment:
Q  545 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaa 618  Q
    ||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| |||||    
T  35248811 atcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaa 35248738  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 609
Target Start/End: Complemental strand, 36151702 - 36151637
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 609  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||| |||||||    
T  36151702 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtctgtaattta 36151637  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 54996797 - 54996874
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||||||  ||| |||||||||| ||||||||||    
T  54996797 tgatcatataatacttcaatcacacttcattcatttt-aataaacattttataa--tctgtaatttaaaaaagaaaagtaa 54996874  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 46205013 - 46204933
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  ||  ||||||||||| ||||||||||    
T  46205013 tgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaa 46204933  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 14898102 - 14898023
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| | |||  |||| |||||||||| ||||||||||    
T  14898102 gatcatataatacttcaatcacacttaatttattttagaaaaacatgtcatatagtctgtaatttaaaaaagaaaagtaa 14898023  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 34579896 - 34579859
Alignment:
Q  587 cattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34579896 cattttataatgtctataatttaaaagagaaaaataag 34579859  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 651857 - 651778
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||| ||||||| || || ||||||||||| |||||| | || ||| |||||  ||||||||||||||| ||||||||||    
T  651857 gatcgtataatattttaatcacacttaatttattttagaaaaacatgttatatagtctataatttaaaaaagaaaagtaa 651778  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 587 - 629
Target Start/End: Complemental strand, 18086063 - 18086021
Alignment:
Q  587 cattttataatgtctataatttaaaagagaaaagtaagatctc 629  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||    
T  18086063 cattttataatgtctgtaatttaaaaaagaaaagtaagctctc 18086021  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 542 - 624
Target Start/End: Complemental strand, 25180022 - 25179940
Alignment:
Q  542 gtgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||||||||| ||||| ||||||||| | ||||  ||  | ||||||||| |||| |||||||||||  ||||||||||    
T  25180022 gtgatcatataatatttcaatcacacttaaattatttccaaagaacattttatagtgtccataatttaaaaatgaaaagtaag 25179940  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 49815548 - 49815468
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    ||||||||||||||||||| ||| ||||||| ||||| || || ||||||||| |   | |||||||||| |||||||||||    
T  49815548 tgatcatataatacttcaatcacgcttaatttatttttaa-aaacattttatagtacttgtaatttaaaaaagaaaagtaag 49815468  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 33655225 - 33655305
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  | | ||||||||||| ||||||||||    
T  33655225 tgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcccataatttaaaaaagaaaagtaa 33655305  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 33224211 - 33224136
Alignment:
Q  548 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||||||||| |||| |||||||| |||||| ||  |||||||| |||| | |||| ||||||||||||||||    
T  33224211 atataatacttcaaacacatttaattga-tttaaaaaaatattttatagtgtcaaaaattaaaaagagaaaagtaag 33224136  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 41497074 - 41497154
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||| |||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  41497074 tgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 41497154  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Original strand, 18063678 - 18063717
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaa 582  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  18063678 tgatcatataatacttcaatcacacttaatttattttaaa 18063717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 619
Target Start/End: Original strand, 24970283 - 24970358
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 619  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||   || ||||||||||| ||||||    
T  24970283 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaaagaaaa 24970358  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Complemental strand, 48094020 - 48093981
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaa 582  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  48094020 tgatcatataatactttaaccacacttaatttattttaaa 48093981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 621
Target Start/End: Complemental strand, 33519175 - 33519097
Alignment:
Q  543 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 621  Q
    |||||||||||||||||||  |||||||||| |||| ||| || ||||||||| |||   |||||||||| | ||||||    
T  33519175 tgatcatataatacttcaaaaacacttaatttatttcaaaaaaacattttatattgttcgtaatttaaaaaataaaagt 33519097  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 22163227 - 22163280
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat 597  Q
    |||||||||||||||||| ||||||||||| |||||| | || |||| ||||||    
T  22163227 gatcatataatacttcaatcacacttaatttattttagaaaaacattatataat 22163280  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 22221935 - 22221988
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat 597  Q
    |||||||||||||||||| ||||||||||| |||||| | || |||| ||||||    
T  22221935 gatcatataatacttcaatcacacttaatttattttagaaaaacattatataat 22221988  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 15316837 - 15316923
Alignment:
Q  27 taggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaaggaaaca 113  Q
    |||||||||||| |||||| |||||||||||||||| |||||||| |||| ||  ||| ||||| |||||  ||| |||| ||||||    
T  15316837 taggatatttggaactgatgtaggatacagaaagttaaaagcattgaagagcagagaatttgaagacagttacgagcaaaagaaaca 15316923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 10072765 - 10072844
Alignment:
Q  544 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 623  Q
    |||||||||||||||||| || |||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  10072765 gatcatataatacttcaatcatacttaatttattttagaaaaacatgttataccgtcggtaatttaaaaaagaaaagtaa 10072844  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Original strand, 34980971 - 34981008
Alignment:
Q  587 cattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  34980971 cattttataatgtccataatttaaaaaagaaaagtaag 34981008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 624
Target Start/End: Original strand, 40644084 - 40644140
Alignment:
Q  567 cttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 624  Q
    |||||||||||||||| ||| |||||||| ||||  ||||| ||||||||||||||||    
T  40644084 cttaattgattttaaaaaag-attttatagtgtccgtaattcaaaagagaaaagtaag 40644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 580
Target Start/End: Complemental strand, 15388 - 15353
Alignment:
Q  545 atcatataatacttcaaccacacttaattgatttta 580  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15388 atcatataatacttcaaccacacttaatttatttta 15353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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