View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4728-Insertion-2 (Length: 910)

Name: NF4728-Insertion-2
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4728-Insertion-2
NF4728-Insertion-2
[»] chr2 (17 HSPs)
chr2 (6-234)||(11655897-11656125)
chr2 (498-737)||(11656863-11657110)
chr2 (8-199)||(11669667-11669858)
chr2 (248-364)||(11656169-11656284)
chr2 (738-907)||(36559196-36559358)
chr2 (6-200)||(11664354-11664548)
chr2 (738-908)||(45332512-45332675)
chr2 (738-885)||(36561537-36561677)
chr2 (405-483)||(11656288-11656366)
chr2 (10-199)||(7343949-7344138)
chr2 (738-892)||(24162604-24162752)
chr2 (738-893)||(19502402-19502550)
chr2 (738-893)||(19504736-19504884)
chr2 (738-854)||(43623973-43624085)
chr2 (872-907)||(36561473-36561508)
chr2 (742-892)||(27104519-27104662)
chr2 (516-558)||(37155067-37155109)
[»] chr5 (21 HSPs)
chr5 (736-907)||(10749503-10749667)
chr5 (738-907)||(10756960-10757122)
chr5 (738-907)||(15354903-15355065)
chr5 (738-907)||(15357179-15357341)
chr5 (738-907)||(23664834-23664996)
chr5 (738-907)||(23667109-23667271)
chr5 (738-907)||(23793591-23793753)
chr5 (738-907)||(34477470-34477632)
chr5 (738-854)||(38960492-38960604)
chr5 (738-901)||(31544798-31544954)
chr5 (738-901)||(31542442-31542598)
chr5 (800-908)||(31179791-31179894)
chr5 (738-854)||(34479860-34479972)
chr5 (738-854)||(25921879-25921992)
chr5 (736-854)||(2174678-2174792)
chr5 (800-894)||(38881905-38881994)
chr5 (738-783)||(21684924-21684969)
chr5 (738-783)||(31179888-31179933)
chr5 (738-783)||(39797849-39797894)
chr5 (738-783)||(18186542-18186587)
chr5 (872-907)||(34479831-34479866)
[»] chr7 (10 HSPs)
chr7 (737-907)||(2935069-2935232)
chr7 (737-907)||(9027525-9027688)
chr7 (738-907)||(22136878-22137040)
chr7 (738-907)||(40551905-40552067)
chr7 (738-907)||(22107867-22108029)
chr7 (738-907)||(40549627-40549789)
chr7 (738-908)||(1047340-1047503)
chr7 (738-854)||(40837149-40837261)
chr7 (738-892)||(3878322-3878469)
chr7 (738-854)||(26804345-26804457)
[»] chr6 (12 HSPs)
chr6 (738-907)||(29755117-29755279)
chr6 (738-907)||(33308685-33308847)
chr6 (738-907)||(33310954-33311116)
chr6 (738-908)||(26068719-26068882)
chr6 (738-908)||(26066448-26066611)
chr6 (738-890)||(14507569-14507716)
chr6 (800-890)||(8995315-8995400)
chr6 (800-890)||(9019762-9019847)
chr6 (821-894)||(19227799-19227869)
chr6 (738-783)||(4816740-4816786)
chr6 (742-783)||(11983521-11983562)
chr6 (502-555)||(12323985-12324038)
[»] scaffold0140 (2 HSPs)
scaffold0140 (738-907)||(21915-22077)
scaffold0140 (738-907)||(24190-24352)
[»] scaffold0472 (1 HSPs)
scaffold0472 (738-907)||(5927-6089)
[»] chr4 (15 HSPs)
chr4 (738-908)||(16932197-16932360)
chr4 (738-908)||(16934551-16934714)
chr4 (738-908)||(22783154-22783317)
chr4 (738-908)||(22780789-22780952)
chr4 (736-892)||(9176888-9177037)
chr4 (738-854)||(7941133-7941246)
chr4 (738-854)||(11434769-11434882)
chr4 (738-892)||(9174538-9174684)
chr4 (738-892)||(36919979-36920125)
chr4 (738-894)||(38408993-38409142)
chr4 (742-894)||(37089764-37089910)
chr4 (738-892)||(11006633-11006781)
chr4 (737-783)||(5637961-5638007)
chr4 (738-783)||(3825067-3825112)
chr4 (800-892)||(31849991-31850078)
[»] chr3 (20 HSPs)
chr3 (738-908)||(38210067-38210230)
chr3 (738-908)||(50493676-50493839)
chr3 (737-908)||(53896591-53896755)
chr3 (800-907)||(25388657-25388759)
chr3 (738-894)||(18099558-18099707)
chr3 (738-854)||(35777163-35777275)
chr3 (739-892)||(5191374-5191520)
chr3 (738-907)||(6063844-6064006)
chr3 (738-854)||(18097310-18097422)
chr3 (800-908)||(5899519-5899622)
chr3 (738-894)||(22114693-22114842)
chr3 (738-783)||(3859317-3859362)
chr3 (800-892)||(10956417-10956504)
chr3 (738-783)||(25388618-25388663)
chr3 (800-908)||(5886044-5886147)
chr3 (738-783)||(6066246-6066291)
chr3 (738-783)||(7606918-7606963)
chr3 (736-783)||(6719606-6719653)
chr3 (872-906)||(6066172-6066206)
chr3 (800-854)||(6066200-6066252)
[»] chr1 (14 HSPs)
chr1 (738-908)||(47179428-47179591)
chr1 (737-885)||(23783237-23783378)
chr1 (742-907)||(16225891-16226049)
chr1 (738-907)||(47177078-47177239)
chr1 (738-854)||(6822775-6822888)
chr1 (738-894)||(51752104-51752254)
chr1 (738-894)||(51749778-51749928)
chr1 (738-854)||(13761577-13761689)
chr1 (738-894)||(20302198-20302348)
chr1 (738-892)||(10400222-10400369)
chr1 (800-894)||(6823683-6823773)
chr1 (765-854)||(16231368-16231453)
chr1 (738-783)||(20291280-20291325)
chr1 (872-907)||(16231447-16231482)
[»] chr8 (6 HSPs)
chr8 (738-908)||(43079347-43079510)
chr8 (738-907)||(18812668-18812830)
chr8 (738-908)||(43081722-43081885)
chr8 (738-907)||(18810483-18810645)
chr8 (509-552)||(41218650-41218693)
chr8 (742-780)||(14807552-14807590)
[»] scaffold0127 (1 HSPs)
scaffold0127 (735-908)||(12891-13057)
[»] scaffold0068 (1 HSPs)
scaffold0068 (738-783)||(28941-28986)
[»] scaffold0002 (2 HSPs)
scaffold0002 (508-558)||(113039-113089)
scaffold0002 (508-558)||(116647-116697)
[»] scaffold0025 (1 HSPs)
scaffold0025 (742-783)||(69788-69829)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 11655897 - 11656125
Alignment:
Q  6 caaaaatgccaatgatgggaggtggaaaagagtatgaaacctcaagcttgttctccccagattgttccgtagctcgttttgttggtaataacggattcaa 105  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11655897 caaaaatgccaataatgggaggtggaaaagagtatgaaacaacaagcttgttctccccagattgttcggtagctcgttttgttggtaatgacggattcaa 11655996  T
Q  106 caacgatattgcgatggtggagaatttgagtctccctagcatgagttgcacaggtggaattgatgggcaaggagttgtatgcaggagataattttgttct 205  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11655997 caatgatattgcgatggtggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataattttgttct 11656096  T
Q  206 ctatcagaggtctcaagtttatcacgcat 234  Q
    |||||||||||||||||||||||||||||    
T  11656097 ctatcagaggtctcaagtttatcacgcat 11656125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 498 - 737
Target Start/End: Original strand, 11656863 - 11657110
Alignment:
Q  498 atccacttgcccccattaaaaccaatttaaaataaaggagaattttgtaaattgcactcaannnnnnnnnnnnaatgaaacatttttacaactgttccga 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||| |    
T  11656863 atccacttgcccccattaaaaccaatttaaaataaaggagaattttgtaaattgcactcaatttttattttttaatgaaacatttttacaactgttccta 11656962  T
Q  598 aacttacaaa--------cataaccttgtgtttataatttatttgaatagtaacaagtgtgtaattttatccaagaattggcgaaccaagaaggggtatg 689  Q
    || |||||||        |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  11656963 aatttacaaacagtcaaacataaccttgtgtttaaaatttatctgaatagtaacaagtgtgtaattttatccaagaattggcaaaccaagcaggggtatg 11657062  T
Q  690 aaacttgaaagagaaagaaagataacataaagtatgaaggttgaatag 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11657063 aaacttgaaagagaaagaaagataacataaagtatgaaggttgaatag 11657110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 11669667 - 11669858
Alignment:
Q  8 aaaatgccaatgatgggaggtggaaaagagtatgaaacctcaagcttgttctccccagattgttccgtagctcgttttgttggtaataacggattcaaca 107  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11669667 aaaatgccaataatgggaggtggaaaagagtatgaaacaacaagcttgttctccccagattgttccgtagctcgttttgttggtaatgacggattcaaca 11669766  T
Q  108 acgatattgcgatggtggagaatttgagtctccctagcatgagttgcacaggtggaattgatgggcaaggagttgtatgcaggagataattt 199  Q
    | |||||||||||||||||  || | |  ||||||||||||||||||||| ||||  |||||||  |||||||||| |||||||||||||||    
T  11669767 atgatattgcgatggtggaagatcttatgctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt 11669858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 11656169 - 11656284
Alignment:
Q  248 atttgtttaaatacaataatgtatcaaatcatcaaataacttggatgattctgtgcttcacattcgaaaaataatgtactattgtctgtcttacatgaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  11656169 atttgtttaaatacaataatgtatcaaatcatcaaataacttggatgattctgtgcttaacattcg-aaaataatgtactattgtctgtcttacatgaaa 11656267  T
Q  348 taaaatatatttataag 364  Q
    |||||||||||||||||    
T  11656268 taaaatatatttataag 11656284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 36559358 - 36559196
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  36559358 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 36559263  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  36559262 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 36559196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 11664354 - 11664548
Alignment:
Q  6 caaaaatgccaatgatgggaggtggaaaagagtatgaaacctcaagcttgttctccccagattgttccgtagctcgttttgttggtaataacggattcaa 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||  |||| || || ||||| ||    
T  11664354 caaaaatgccaataatgggaggtggaaaagagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcattgggaacaatggattaaa 11664453  T
Q  106 caacgatattgcgatggtggagaatttgagtctccctagcatgagttgcacaggtggaattgatgggcaaggagttgtatgcaggagataatttt 200  Q
    |||  ||||||  || ||||||||||||   ||||||||| |||| |||||| |||||||||||||  |||||||||| ||||  ||||||||||    
T  11664454 caaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt 11664548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 45332675 - 45332512
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||    
T  45332675 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggaac 45332580  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||| | |||| |||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  45332579 tggaaaaatcgtgg-aacgat-ggggtcacatc-gtggcacgatggtgcgctggcggataaaaataaaacg 45332512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 738 - 885
Target Start/End: Complemental strand, 36561677 - 36561537
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||||| |||||||| ||||||||    
T  36561677 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttc-acggcacgat-ggaggttttagttttttggg-caaggcac 36561582  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatgggg 885  Q
    |||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  36561581 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatgggg 36561537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 405 - 483
Target Start/End: Original strand, 11656288 - 11656366
Alignment:
Q  405 aaataatatatgtgtaattgtcaacttagcccaacataaaaatagtaaggtcaaagttattaagtgtgcatatttttat 483  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  11656288 aaataacatgtgtgtaattgtcaacttagcccaaaataaaaatagtaaggtcgaagttattaagtgtgcatatttttat 11656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 7344138 - 7343949
Alignment:
Q  10 aatgccaatgatgggaggtggaaaagagtatgaaacctcaagcttgttctccccagattgttccgtagctcgttttgttggtaataacggattcaacaac 109  Q
    ||||||||| ||||| |||| ||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||  |||| || |  ||||| |||||     
T  7344138 aatgccaataatgggcggtgcaaaagagtatgaaacgtcaagcttgttctctccagattgttctgtagcacgtttcattggaaacactggattaaacaaa 7344039  T
Q  110 gatattgcgatggtggagaatttgagtctccctagcatgagttgcacaggtggaattgatgggcaaggagttgtatgcaggagataattt 199  Q
    |||||||  |   |||||||||||   ||||||||| |||  |||||| |||||||||||||  |||||||||| ||||  |||||||||    
T  7344038 gatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt 7343949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 738 - 892
Target Start/End: Complemental strand, 24162752 - 24162604
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |  || |||||  ||  |||||||| |||||||| || |||||| | ||||||||    
T  24162752 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcac-aatggttgggcaacg-tggcacgat-ggaggtttcagttttttgaggcaaggcac 24162656  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||||||||| |||| |||||| |||| |||||||||| | ||||||||    
T  24162655 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgattgtgcgctggc 24162604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 738 - 893
Target Start/End: Complemental strand, 19502550 - 19502402
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||| || |  |||  ||  |||||||||| |||||| || ||||| ||| |||||||    
T  19502550 tgtgatagttaacttaaaatcaggtttctgcagaatcgtggcacgatgg-caaggcaacgt-ggcacgatgg-aggtttcagttttttaggc-aaggcac 19502455  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcg 893  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||    
T  19502454 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcg 19502402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 738 - 893
Target Start/End: Complemental strand, 19504884 - 19504736
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||| |||||||||||||||| ||||| ||| |||| |||||||| || |  |||  ||  |||||||||| ||||||||  ||||| ||| |||||||    
T  19504884 tgtgaaagttaacttaaaatcaggtttcagcagaatcatggcacgatgg-caaggcaacgt-ggcacgatgg-aggttttaattttttaggc-aaggcac 19504789  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcg 893  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||    
T  19504788 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcg 19504736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 43624085 - 43623973
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||| |||||||||||||||| ||||||||| |||| ||||||||  ||||||||  |   |||||||| |||||||| ||  ||||| | ||||||||    
T  43624085 tgtgaaagttaacttaaaatcaggtttctgcagaatcatggcacga-tggctgggcaac-atggcacgattggaggtttcag--ttttgaggcaaggcac 43623990  T
Q  838 tggaaaaatcgtggcac 854  Q
    || ||||||||||||||    
T  43623989 tgaaaaaatcgtggcac 43623973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 872 - 907
Target Start/End: Complemental strand, 36561508 - 36561473
Alignment:
Q  872 gtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||| |||||||||||||||||||||||    
T  36561508 gtggcacgatggtgcgctggcggataaaaataaaac 36561473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 892
Target Start/End: Original strand, 27104519 - 27104662
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcactgga 841  Q
    ||||||||||||||||||  |||||||| |||||||||||||   |  ||||  ||  |||||||| |||||||| | ||||||| | ||||||||||||    
T  27104519 agagttaacttaaaatcagatttctgcagaatcgtggcacga-ttgaagggcaacg-tggcacgat-ggaggtttca-gtttttgaggcaaggcactgga 27104614  T
Q  842 aaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||||| |||| ||| || |||| |||||||||||| ||||||||    
T  27104615 aaaatcgtggca-cgat-gggatcgcatc-gtggcacgatggtgcgctggc 27104662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 37155109 - 37155067
Alignment:
Q  516 aaaccaatttaaaataaaggagaattttgtaaattgcactcaa 558  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  37155109 aaaccaatttaaaataaaggacactttagtaaattgcactcaa 37155067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 6e-49; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 736 - 907
Target Start/End: Original strand, 10749503 - 10749667
Alignment:
Q  736 agtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggc 835  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||    
T  10749503 agtgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggc 10749598  T
Q  836 actggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  10749599 actggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 10749667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 10756960 - 10757122
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  10756960 tgtgagagttaacttaaaatcaggtttctgcacaatcgtagcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 10757055  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  10757056 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 10757122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 15355065 - 15354903
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  15355065 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 15354970  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  15354969 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 15354903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 15357341 - 15357179
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  15357341 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 15357246  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  15357245 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 15357179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 23664834 - 23664996
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||||  ||||||||  |||||||    
T  23664834 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggagtttttatttttttggg-aaaggcac 23664929  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| ||| || |||| |||||||||||| |||||||||||||||||||||||    
T  23664930 tggaaaaatcgtggca-cgat-gggatcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 23664996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 23667109 - 23667271
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||||  ||||||||  |||||||    
T  23667109 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggagtttttatttttttggg-aaaggcac 23667204  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| ||| || |||| |||||||||||| |||||||||||||||||||||||    
T  23667205 tggaaaaatcgtggca-cgat-gggatcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 23667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 23793753 - 23793591
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||||  ||||||||  |||||||    
T  23793753 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggagtttttatttttttggg-aaaggcac 23793658  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| ||| || |||| |||||||||||| |||||||||||||||||||||||    
T  23793657 tggaaaaatcgtggca-cgat-gggatcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 23793591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 34477632 - 34477470
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||  ||  |||||||||| ||||||||| ||||| ||| |||||||    
T  34477632 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatgg-ctgggcaacgt-ggcacgatgg-aggttttagttttttaggc-aaggcac 34477537  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||||||    
T  34477536 tggaaaaatcgtggcac-gatgggg-tcgcatcg-tggcacgatggtgcgctggcggataaaaataaaac 34477470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 38960604 - 38960492
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||| |||||||| ||||||||    
T  38960604 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggctttg-cggcacgat-ggaggttttagttttttggg-caaggcac 38960509  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  38960508 tggaaaaatcgtggcac 38960492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 738 - 901
Target Start/End: Original strand, 31544798 - 31544954
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  31544798 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 31544893  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaa 901  Q
    |||||||||||||||| |||| ||||||||||| | | |||||||| |||||||||||||||||    
T  31544894 tggaaaaatcgtggca-cgat-ggggtctcatc-gagacacgatggtgcgctggcggataaaaa 31544954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 738 - 901
Target Start/End: Original strand, 31542442 - 31542598
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  31542442 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtgacacgatag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 31542537  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaa 901  Q
    |||||||||||||||| |||| ||||||||||| | | |||||||| |||||||||||||||||    
T  31542538 tggaaaaatcgtggca-cgat-ggggtctcatc-gagacacgatggtgcgctggcggataaaaa 31542598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 800 - 908
Target Start/End: Complemental strand, 31179894 - 31179791
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaa 899  Q
    |||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| ||||    
T  31179894 ggcacgatgg-aggttttagttttttgggc-aagacactggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcgggtaaa 31179800  T
Q  900 aataaaacg 908  Q
    |||||||||    
T  31179799 aataaaacg 31179791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 34479972 - 34479860
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||||||| ||||||||||| ||||| || ||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggctgggcaacg-tggcacgat-ggaggttttagttttttagg-caaggcac 34479877  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  34479876 tggaaaaatcgtggcac 34479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 25921992 - 25921879
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  || ||| |  ||  |||||||| |||||||| || |||||| | ||||||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggttggacaacg-tggcacgat-ggaggtttcagttttttgaggcaaggcac 25921896  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  25921895 tggaaaaatcgtggcac 25921879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 736 - 854
Target Start/End: Original strand, 2174678 - 2174792
Alignment:
Q  736 agtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggc 835  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  |||  |||  ||  |||||||| |||||||| || ||||| || ||||||    
T  2174678 agtgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggcaaggcaacg-tggcacgat-ggaggtttcagttttttagg-caaggc 2174773  T
Q  836 actggaaaaatcgtggcac 854  Q
    |||||||||||||||||||    
T  2174774 actggaaaaatcgtggcac 2174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 800 - 894
Target Start/End: Original strand, 38881905 - 38881994
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||| ||||||||| |||||| | |||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||||    
T  38881905 ggcacgatgg-aggttttag-tttttgaggcaaggcactggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 38881994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 21684969 - 21684924
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 21684924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 31179933 - 31179888
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 31179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Original strand, 39797849 - 39797894
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  39797849 tgtgagagttaacttaaaatcaggtttctgcataatcgtggcacga 39797894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 18186587 - 18186542
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||    
T  18186587 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggtacga 18186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 872 - 907
Target Start/End: Complemental strand, 34479866 - 34479831
Alignment:
Q  872 gtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||| |||||||||||||||||||||||    
T  34479866 gtggcacgatggtgcgctggcggataaaaataaaac 34479831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 737 - 907
Target Start/End: Original strand, 2935069 - 2935232
Alignment:
Q  737 gtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggca 836  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| |||||||    
T  2935069 gtgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggca 2935164  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  2935165 ctggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 2935232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 737 - 907
Target Start/End: Complemental strand, 9027688 - 9027525
Alignment:
Q  737 gtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggca 836  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| |||||||    
T  9027688 gtgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggca 9027593  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  9027592 ctggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 9027525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 22136878 - 22137040
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  22136878 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 22136973  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  22136974 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 22137040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 40551905 - 40552067
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  40551905 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 40552000  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  40552001 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 40552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 22107867 - 22108029
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  22107867 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-gcaggttttagttttttggg-caaggcac 22107962  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  22107963 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 22108029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 40549627 - 40549789
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| | ||||||||| |||||||| ||||||||    
T  40549627 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-gcaggttttagttttttggg-caaggcac 40549722  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  40549723 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 40549789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 1047503 - 1047340
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||||||| ||||||||||| |||||||| ||||||||    
T  1047503 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttagttttttggg-caaggcac 1047408  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  1047407 tggaaaaatcgtggca-cgat-ggggtctcatc-gtggcacgatggtgcgctggcggataaaaataaaacg 1047340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 40837261 - 40837149
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| || | || |  ||  |||||||| |||||||| || ||||| || ||||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggtc-ggacaacg-tggcacgat-ggaggtttcagttttttagg-caaggcac 40837166  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  40837165 tggaaaaatcgtggcac 40837149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 738 - 892
Target Start/End: Original strand, 3878322 - 3878469
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| | |  |||| | ||| ||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacga-tggctgggcaacg-tggcacgattggaggtttcaag--tttgaggcaaagcac 3878417  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||||||||| |||| |||||| |||| ||||||||||||  |||||||    
T  3878418 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtacgctggc 3878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 26804345 - 26804457
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||| || |||||||||||||  ||||||||  ||  || ||||| |||||||| ||  ||||| | |||||||     
T  26804345 tgtgagagttaacttaaaatcaggtttctacagaatcgtggcacga-tggctgggcaacg-tggtacgattggaggtttcag--ttttgaggcaaggcag 26804440  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  26804441 tggaaaaatcgtggcac 26804457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 9e-48; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 29755279 - 29755117
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  29755279 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 29755184  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  29755183 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 29755117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 33308685 - 33308847
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||  |||||||| ||||||||||| |||||||| ||||||||    
T  33308685 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcttcg-tggcacgat-ggaggttttagttttttggg-caaggcac 33308780  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  33308781 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 33308847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 33310954 - 33311116
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||  |||||||| ||||||||||| |||||||| ||||||||    
T  33310954 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcttcg-tggcacgat-ggaggttttagttttttggg-caaggcac 33311049  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  33311050 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 33311116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 26068882 - 26068719
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |  |||  ||  |||| ||||| ||||||||| ||||||||| |||||||    
T  26068882 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgg-caaggcaacgt-ggcatgatgg-aggttttagttttttgggc-aaggcac 26068787  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  26068786 tggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaacg 26068719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 26066611 - 26066448
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||| |  |||  ||  |||||||||| ||||||||| | ||||||| |||||||    
T  26066611 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgacgg-caaggcaacgt-ggcacgatgg-aggttttagttatttgggc-aaggcac 26066516  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    ||||||||||||||||| ||||||| |||||||| |||||| |||| ||||||||||||||||||||||||    
T  26066515 tggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacaatggtgcgctggcggataaaaataaaacg 26066448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 890
Target Start/End: Complemental strand, 14507716 - 14507569
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttag-gtttttgggccaaggca 836  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| ||  ||||||   |||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacga-tggctgggcaacg-tggcacgat-ggaggtttcagtttttttgatacaaggca 14507620  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctg 890  Q
    |||||||||| |||||| |||| |||||| |||| |||||||||||| ||||||    
T  14507619 ctggaaaaatggtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctg 14507569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 800 - 890
Target Start/End: Original strand, 8995315 - 8995400
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctg 890  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||    
T  8995315 ggcacgattggaggtttcag-tttttgggc-aaggcactggaaaaatcgtggca-cgat-ggggtcacatc-gtggcacgatggtgcgctg 8995400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 800 - 890
Target Start/End: Original strand, 9019762 - 9019847
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctg 890  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||    
T  9019762 ggcacgattggaggtttcag-tttttgggc-aaggcactggaaaaatcgtggca-cgat-ggggtcacatc-gtggcacgatggtgcgctg 9019847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 821 - 894
Target Start/End: Complemental strand, 19227869 - 19227799
Alignment:
Q  821 tttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||| | |||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||||    
T  19227869 tttttgaggcaaggcactggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 19227799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 4816786 - 4816740
Alignment:
Q  738 tgtgagagttaacttaaaatcatg-tttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||    
T  4816786 tgtgagagttaacttaaaatcaggttttctgcagaatcgtggcacga 4816740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 783
Target Start/End: Complemental strand, 11983562 - 11983521
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||| ||||||||| |||||||| ||||    
T  11983562 agagttaacttaaaatcaggtttctgcagaatcgtggtacga 11983521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 12323985 - 12324038
Alignment:
Q  502 acttgcccccattaaaaccaatttaaaataaaggagaattttgtaaattgcact 555  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||| ||||||| ||||    
T  12323985 acttgtccccatttaaatcaatttaaaataaaggataatttagtaaattacact 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 21915 - 22077
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  21915 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 22010  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  22011 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 22077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 24190 - 24352
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  24190 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggcac 24285  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  24286 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 24352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 5927 - 6089
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| || ||||||||    
T  5927 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-ggctgggcttcg-cggcacgat-ggaggttttagttttttagg-caaggcac 6022  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||||||  ||| |||||||||||  ||||||||||| |||||||||||||||||||||||    
T  6023 tggaaaaatcgtggca-tgat-ggggtctcatc-atggcacgatggtgcgctggcggataaaaataaaac 6089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 16932360 - 16932197
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||||||| ||||||||||| |||||||| ||||||||    
T  16932360 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttagttttttggg-caaggcac 16932265  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  16932264 tggaaaaatcgtggca-cgat-ggggtctcatc-gtggcacgatggtgcgctggcggataaaaataaaacg 16932197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 16934714 - 16934551
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||  |   |||||||||| ||||||||| ||||||||| |||||||    
T  16934714 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgg-ctgggcaacat-ggcacgatgg-aggttttagttttttgggc-aaggcac 16934619  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||| |||||| |||||||||||||||||    
T  16934618 tggaaaaatcgtggcac-gatgggg-tctcatcc-tggcacgatggtgcgctgtcggataaaaataaaacg 16934551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 22783317 - 22783154
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  22783317 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 22783222  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||| |||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  22783221 tggaaaaatcatggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaacg 22783154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 738 - 908
Target Start/End: Complemental strand, 22780952 - 22780789
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  22780952 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 22780857  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||| |||||| ||||||| |||||| | ||||||||||| ||||||||||||||||||||||||    
T  22780856 tggaaaaatcatggcac-gatgggg-tctcattg-tggcacgatggtgcgctggcggataaaaataaaacg 22780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 736 - 892
Target Start/End: Complemental strand, 9177037 - 9176888
Alignment:
Q  736 agtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggc 835  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| || | |||  ||  |||||||| ||||||||||| ||||| || ||||||    
T  9177037 agtgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggttaggcaacg-tggcacgat-ggaggttttagttttttagg-caaggc 9176942  T
Q  836 actggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||    
T  9176941 actggaaaaatcgtggca-cgat-ggggtctcatc-gtggcacgatggtgcgctggc 9176888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 7941133 - 7941246
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| || |||||| | ||||||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggctgggcaacg-tggcacgat-ggaggtttcagttttttgaggcaaggcac 7941229  T
Q  838 tggaaaaatcgtggcac 854  Q
    ||||||||| |||||||    
T  7941230 tggaaaaatggtggcac 7941246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 11434769 - 11434882
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||  ||||||||  ||  |||||||| |||||||| || |||||| | |||| |||    
T  11434769 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacga-tggctgggcaacg-tggcacgat-ggaggtttcagttttttgaggcaagacac 11434865  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  11434866 tggaaaaatcgtggcac 11434882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 738 - 892
Target Start/End: Complemental strand, 9174684 - 9174538
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||| |||| |||  ||   ||||||| ||||||||||| || || || ||||||||    
T  9174684 tgtgagagttaacttaaaatca-ggttctgcagaatcgtggcacgac-ggctaggcaacg-tagcacgat-ggaggttttagtttattagg-caaggcac 9174590  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||| ||||| |||| ||||||||||| |||||||||||| ||||||||    
T  9174589 tggaaaaatcatggca-cgat-ggggtctcatc-gtggcacgatggtgcgctggc 9174538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 738 - 892
Target Start/End: Complemental strand, 36920125 - 36919979
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| |   ||||| | |||| |||    
T  36920125 tgtgagagttaacttaaaatca-ggttctgcaaaatcgtggcacga-tggctgggcaacg-tggcacgattggaggtttca--attttgaggcaagtcac 36920031  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||    
T  36920030 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggc 36919979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 894
Target Start/End: Original strand, 38408993 - 38409142
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||| |  |||||||| |||||||||||||   ||||||| |||  |||||||| |||||||| | |  |||| | ||| ||||    
T  38408993 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacga-ttgctgggcatcg-tggcacgattggaggtttcaag--tttgaggcaaagcac 38409088  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| ||| ||||||    
T  38409089 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgttggcgg 38409142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 742 - 894
Target Start/End: Complemental strand, 37089910 - 37089764
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcactgga 841  Q
    ||||||||||||||||||  |||||||| ||||||||||||| || |  |||  ||  ||||||||| || ||||||| ||||| ||  | |||||||||    
T  37089910 agagttaacttaaaatcagatttctgcagaatcgtggcacgatgg-caaggcaacgt-ggcacgatgagatgttttagttttttaggtga-ggcactgga 37089814  T
Q  842 aaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||||| |||| |||||| |||| |||||||||||| ||||||||||    
T  37089813 aaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 37089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 738 - 892
Target Start/End: Complemental strand, 11006781 - 11006633
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttc-tgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggca 836  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||||  | ||||||  ||  |||||||||| |||||| |  ||||| ||| ||||||    
T  11006781 tgtgagagttaacttaaaatcaggttttatgcagaatcgtggcacgatcg-ctgggcaacgt-ggcacgatgg-aggtttcaattttttaggc-aaggca 11006686  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||    
T  11006685 ctggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggc 11006633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 737 - 783
Target Start/End: Complemental strand, 5638007 - 5637961
Alignment:
Q  737 gtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||    
T  5638007 gtgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacga 5637961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 3825112 - 3825067
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacga 3825067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 800 - 892
Target Start/End: Complemental strand, 31850078 - 31849991
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||| |||||||| ||  ||||||| |||||||||||||||||| ||||| |||| |||||| |||| |||||||||||| ||||||||    
T  31850078 ggcacgattggaggtttcag--ttttggggcaaggcactggaaaaatcttggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggc 31849991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 8e-39; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 738 - 908
Target Start/End: Original strand, 38210067 - 38210230
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||||||| ||||||||||| |||||||| ||||||||    
T  38210067 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttagttttttggg-caaggcac 38210162  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||||| |||| ||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  38210163 tggaaaaatcgtggca-cgat-ggggtctcatc-gtggcacgatagtgcgctggcggataaaaataaaacg 38210230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 738 - 908
Target Start/End: Original strand, 50493676 - 50493839
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  50493676 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 50493771  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    ||||||||||||||||| ||||| | |||||||| ||||||||||| ||||||||||||||||||||||||    
T  50493772 tggaaaaatcgtggcac-gatggag-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaacg 50493839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 737 - 908
Target Start/End: Complemental strand, 53896755 - 53896591
Alignment:
Q  737 gtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggca 836  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||  | ||||||  ||  |||||||||| ||||||||| ||||||||| |||| |    
T  53896755 gtgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgattg-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggta 53896660  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||| || || ||||||||||||||||||    
T  53896659 ctggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgctcttgcggataaaaataaaacg 53896591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 800 - 907
Target Start/End: Original strand, 25388657 - 25388759
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaa 899  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| ||||||    
T  25388657 ggcacgatgg-aggttttagttttttgggc-aaggcactggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcagataaa 25388751  T
Q  900 aataaaac 907  Q
    ||||||||    
T  25388752 aataaaac 25388759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 738 - 894
Target Start/End: Complemental strand, 18099707 - 18099558
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| ||  ||||| | |||| |||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacga-tggctgggcaacg-tggcacgattggaggtttcag--ttttgaggcaagacac 18099612  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||||    
T  18099611 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 18099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 35777163 - 35777275
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||| |  |||||||| |||||||||||||| | ||||||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  35777163 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacgacag-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 35777258  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  35777259 tggaaaaatcgtggcac 35777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 739 - 892
Target Start/End: Original strand, 5191374 - 5191520
Alignment:
Q  739 gtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcact 838  Q
    |||||||||||||||||||||  |||||||| |||||||||||||   ||||||| |||  |||||||| |||||||| ||  ||||| | ||||| |||    
T  5191374 gtgagagttaacttaaaatcagatttctgcagaatcgtggcacga-ttgctgggcatcg-tggcacgattggaggtttcag--ttttgaggcaaggtact 5191469  T
Q  839 ggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    ||||||||||||||| |||| ||| ||||||| |||||||||||| ||||||||    
T  5191470 ggaaaaatcgtggca-cgat-gggatctcatc-gtggcacgatggtgcgctggc 5191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 738 - 907
Target Start/End: Complemental strand, 6064006 - 6063844
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||||| |||||||||||||| |||| |||| ||||||||||||| || |  |||  ||  ||||| |||| ||||||||| ||||||||| |||||||    
T  6064006 tgtgagaattaacttaaaatcaggtttatgcagaatcgtggcacgatgg-caaggcaacgt-ggcacaatgg-aggttttagttttttgggc-aaggcac 6063911  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    || |||||||||||||| ||||||| || ||||| ||||||||||| |  ||||||||||||||||||||    
T  6063910 tgaaaaaatcgtggcac-gatgggg-tcgcatcg-tggcacgatggtggactggcggataaaaataaaac 6063844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 738 - 854
Target Start/End: Complemental strand, 18097422 - 18097310
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| ||  ||||| | |||||||     
T  18097422 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacga-tggctgggcaacg-tggcacgattggaggtttcag--ttttgaggcaaggcat 18097327  T
Q  838 tggaaaaatcgtggcac 854  Q
     ||||||||||||||||    
T  18097326 aggaaaaatcgtggcac 18097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 800 - 908
Target Start/End: Original strand, 5899519 - 5899622
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaa 899  Q
    |||||||||| | ||||||| ||||| ||| ||||||||||||||||| |||||| ||||||| || ||||| ||||||||||| |||||||| ||||||    
T  5899519 ggcacgatgg-atgttttagttttttaggc-aaggcactggaaaaatcatggcac-gatgggg-tcgcatcg-tggcacgatggtgcgctggcagataaa 5899613  T
Q  900 aataaaacg 908  Q
    |||||||||    
T  5899614 aataaaacg 5899622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 738 - 894
Target Start/End: Complemental strand, 22114842 - 22114693
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||  || |||||  ||  |||||||| |||||||| | ||||||| | ||||||||    
T  22114842 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacga-tggttgggcaacg-tggcacgat-ggaggtttca-gtttttgaggcaaggcac 22114747  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    ||||||||| |||||| |||| |||||| |||| |||||||||||| ||| ||||||    
T  22114746 tggaaaaattgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgatggcgg 22114693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Original strand, 3859317 - 3859362
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  3859317 tgtgagagttaacttaaaatcaggtttctgcataatcgtggcacga 3859362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 800 - 892
Target Start/End: Complemental strand, 10956504 - 10956417
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||||| |||||||| ||  ||||||| |||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||    
T  10956504 ggcacgattggaggtttcag--ttttggggcaaggcactggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggc 10956417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Original strand, 25388618 - 25388663
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  25388618 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 25388663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 800 - 908
Target Start/End: Original strand, 5886044 - 5886147
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaa 899  Q
    |||||||||| | ||||||| ||||| ||| |||| ||||||||||||||||||| ||||||| || ||||| ||| ||||||| |||||||| ||||||    
T  5886044 ggcacgatgg-atgttttagttttttaggc-aaggtactggaaaaatcgtggcac-gatgggg-tcgcatcg-tggtacgatggtgcgctggcagataaa 5886138  T
Q  900 aataaaacg 908  Q
    |||||||||    
T  5886139 aataaaacg 5886147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 6066291 - 6066246
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  6066291 tgtgagagttaacttaaaatcaggtttctgcagaattgtggcacga 6066246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 783
Target Start/End: Complemental strand, 7606963 - 7606918
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacga 7606918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 783
Target Start/End: Complemental strand, 6719653 - 6719606
Alignment:
Q  736 agtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    ||||||||| |||||||||||||| ||||||||  |||||||||||||    
T  6719653 agtgtgagaattaacttaaaatcaggtttctgcttaatcgtggcacga 6719606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 872 - 906
Target Start/End: Complemental strand, 6066206 - 6066172
Alignment:
Q  872 gtggcacgatggggcgctggcggataaaaataaaa 906  Q
    |||||||||||| ||||||||||||||||||||||    
T  6066206 gtggcacgatggtgcgctggcggataaaaataaaa 6066172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 800 - 854
Target Start/End: Complemental strand, 6066252 - 6066200
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcac 854  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  6066252 ggcacgatgg-aggttttagttttttgggc-aaggcactggaaacatcgtggcac 6066200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 738 - 908
Target Start/End: Original strand, 47179428 - 47179591
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||||||| ||||||||||| |||||||| ||||||||    
T  47179428 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttagttttttggg-caaggcac 47179523  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    || ||||||||||||| |||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  47179524 tgaaaaaatcgtggca-cgat-ggggtctcatc-gtggcacgatggtgcgcttgcggataaaaataaaacg 47179591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 737 - 885
Target Start/End: Original strand, 23783237 - 23783378
Alignment:
Q  737 gtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggca 836  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||||||| |||||||    
T  23783237 gtgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgac-agctgggcttcg-cggcacgat-ggaggttttagttttttggg-caaggca 23783332  T
Q  837 ctggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatgggg 885  Q
    ||||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  23783333 ctggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatgggg 23783378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 742 - 907
Target Start/End: Original strand, 16225891 - 16226049
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcactgga 841  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||||  ||  |||||||||| ||||||||| ||||||||| |||||||||||    
T  16225891 agagttaacttaaaatcaggtttctgcagaatcgtggcacgacggt-tgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcactgga 16225986  T
Q  842 aaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||||||    
T  16225987 aaaatcgtggcac-gatgggg-tcgcatcg-tggcacgatggtgcgctggcggataaaaataaaac 16226049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 47177078 - 47177239
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||  ||  |||||||||| ||||||||| ||||||||| ||| |||    
T  47177078 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacga-ctgggcaacgt-ggcacgatgg-aggttttag-tttttgggc-aagacac 47177172  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  47177173 tggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaac 47177239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 6822775 - 6822888
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||||||| |||||||| || |||||| | ||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggctgggcaacg-tggcacgat-ggaggtttcagttttttgaggcaaggcac 6822871  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  6822872 tggaaaaatcgtggcac 6822888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 738 - 894
Target Start/End: Original strand, 51752104 - 51752254
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  || |||||  ||  |||||||| |||||||| || |||||| | ||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggttgggcaacg-tggcacgat-ggaggtttcagttttttgaggcaaggcac 51752200  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||||||||| |||| |||| | |||| |||||||||||| ||||||||||    
T  51752201 tggaaaaatcgtggca-cgat-ggggccgcatc-gtggcacgatggtgcgctggcgg 51752254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 738 - 894
Target Start/End: Original strand, 51749778 - 51749928
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  || |||||  ||  || ||||| |||||||| || |||||| | ||||||||    
T  51749778 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacga-tggttgggcaacg-tggtacgat-ggaggtttcagttttttgaggcaaggcac 51749874  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||||||||| |||| |||||| |||| |||||||||| | ||||||||||    
T  51749875 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatagtgcgctggcgg 51749928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 854
Target Start/End: Original strand, 13761577 - 13761689
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||  ||  |||| ||| |||||||| | ||||||| | ||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga-tggctgggcaacg-tggcatgat-ggaggtttca-gtttttgaggcaaggcac 13761672  T
Q  838 tggaaaaatcgtggcac 854  Q
    |||||||||||||||||    
T  13761673 tggaaaaatcgtggcac 13761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 738 - 894
Target Start/End: Original strand, 20302198 - 20302348
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    ||||||||||||||||||||||  |||||||| ||||| |||| || || |  |||  ||  |||||||||| |||||| || |||||| | ||||||||    
T  20302198 tgtgagagttaacttaaaatcagatttctgcagaatcgcggcatgatgg-caaggcaacgt-ggcacgatgg-aggtttcagttttttgaggcaaggcac 20302294  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    ||||||||| |||||| |||| |||||| |||| |||||||||||| ||||||||||    
T  20302295 tggaaaaattgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 20302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 738 - 892
Target Start/End: Complemental strand, 10400369 - 10400222
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||   |||||||  ||  |||||||| |||||||| | |  |||| | ||| ||||    
T  10400369 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacga-ttgctgggcaacg-tggcacgattggaggtttcaag--tttgaggcaaagcac 10400274  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggc 892  Q
    |||||| ||||||||| |||| |||||| |||| |||||||||||| ||||||||    
T  10400273 tggaaatatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggc 10400222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 800 - 894
Target Start/End: Original strand, 6823683 - 6823773
Alignment:
Q  800 ggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcgg 894  Q
    |||||||||| |||||| || |||||| | ||||||||||||||||||||||||  ||| |||||| |||| |||||||||||| ||||||||||    
T  6823683 ggcacgatgg-aggtttcagttttttgaggcaaggcactggaaaaatcgtggca-tgat-ggggtcgcatc-gtggcacgatggtgcgctggcgg 6823773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 854
Target Start/End: Original strand, 16231368 - 16231453
Alignment:
Q  765 ctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcactggaaaaatcgtggcac 854  Q
    ||||| |||||||||||||||| ||||||  ||  |||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  16231368 ctgcagaatcgtggcacgacgg-ctgggcaacgt-ggcacgatgg-aggttttagttttttgggc-aagacactggaaaaatcgtggcac 16231453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 738 - 783
Target Start/End: Original strand, 20291280 - 20291325
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacga 20291325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 872 - 907
Target Start/End: Original strand, 16231447 - 16231482
Alignment:
Q  872 gtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||| |||||||||||||||||||||||    
T  16231447 gtggcacgatggtgcgctggcggataaaaataaaac 16231482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 5e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 738 - 908
Target Start/End: Original strand, 43079347 - 43079510
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |  |||  ||  |||||||||| ||||||||| ||||||||| |||||||    
T  43079347 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgg-caaggcaacgt-ggcacgatgg-aggttttagttttttgggc-aaggcac 43079442  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||| || ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  43079443 tggaaaaatcgtggtac-gatgggg-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaacg 43079510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 18812668 - 18812830
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||  ||  |||||||| ||||||||||| ||||| || ||||||||    
T  18812668 tgtgagagttaacttaaaatcaggtttctgaagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttagttttttagg-caaggcac 18812763  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  18812764 tggaaaaatcgtggca-cgat-ggggtcgcatc-gtggcacgatggtgcgctggcggataaaaataaaac 18812830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 738 - 908
Target Start/End: Original strand, 43081722 - 43081885
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |  |||   |  |||||||||| ||||||||| ||||||||| |||||||    
T  43081722 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgg-caaggcaaagt-ggcacgatgg-aggttttagttttttgggc-aaggcac 43081817  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||  |||||||||||||||||||||||    
T  43081818 tggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtacgctggcggataaaaataaaacg 43081885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 738 - 907
Target Start/End: Original strand, 18810483 - 18810645
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaaggcac 837  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||||||| ||||||||||  ||||| || ||||||||    
T  18810483 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgac-ggctgggcaacg-tggcacgat-ggaggttttatttttttagg-caaggcac 18810578  T
Q  838 tggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaac 907  Q
    ||||||||| | |||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||    
T  18810579 tggaaaaattgcggca-cgat-ggggtcacatc-gtggcacgatggtgcgctggcggataaaaataaaac 18810645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 552
Target Start/End: Complemental strand, 41218693 - 41218650
Alignment:
Q  509 cccattaaaaccaatttaaaataaaggagaattttgtaaattgc 552  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  41218693 cccattcaaaccaatttaaaataaaggataatttagtaaattgc 41218650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 780
Target Start/End: Original strand, 14807552 - 14807590
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggca 780  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  14807552 agagttaacttaaaatcaggtttctgcagaatcgtggca 14807590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 735 - 908
Target Start/End: Complemental strand, 13057 - 12891
Alignment:
Q  735 tagtgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacgacgggctgggcttcgccggcacgatgggaggttttaggtttttgggccaagg 834  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||| |  |  |||  ||  |||||||||| ||||||||| ||||||||| ||||    
T  13057 tagtgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgt-caaggcaacgt-ggcacgatgg-aggttttagttttttgggc-aagg 12962  T
Q  835 cactggaaaaatcgtggcaccgatgggggtctcatcggtggcacgatggggcgctggcggataaaaataaaacg 908  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  12961 cactggaaaaatcgtggcac-gatgggg-tctcatcg-tggcacgatggtgcgctggcggataaaaataaaacg 12891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 783
Target Start/End: Original strand, 28941 - 28986
Alignment:
Q  738 tgtgagagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacga 28986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 113039 - 113089
Alignment:
Q  508 ccccattaaaaccaatttaaaataaaggagaattttgtaaattgcactcaa 558  Q
    ||||||| ||||||||||||||| ||||| |||||  ||||||||||||||    
T  113039 ccccattcaaaccaatttaaaatcaaggataatttaataaattgcactcaa 113089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 116647 - 116697
Alignment:
Q  508 ccccattaaaaccaatttaaaataaaggagaattttgtaaattgcactcaa 558  Q
    ||||||| ||||||||||||||| ||||| ||||| |||||||||| ||||    
T  116647 ccccattcaaaccaatttaaaatcaaggataatttagtaaattgcagtcaa 116697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 783
Target Start/End: Complemental strand, 69829 - 69788
Alignment:
Q  742 agagttaacttaaaatcatgtttctgcacaatcgtggcacga 783  Q
    ||||||||||||||||||  |||||||| |||||||||||||    
T  69829 agagttaacttaaaatcagatttctgcagaatcgtggcacga 69788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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