View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4728-Insertion-3 (Length: 859)
Name: NF4728-Insertion-3
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4728-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Complemental strand, 10001207 - 10000623
Alignment:
| Q |
8 |
caattggccttagacgtggatggaagttcgtacggtaatcctggcagagcagggtatgggggagtaattcgagatcaccaagggaaatggatattaggtt |
107 |
Q |
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| T |
10001207 |
caattggccttagacgtggatggaagttcgtacgggaatcctggcagagcagggtatgggggggtaattcgagatcaccaagggaaatggatattaggtt |
10001108 |
T |
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| Q |
108 |
tcagtgggcatgttgaatatgcggatagcctacatgttgaactccttgcaatttttattggattatcagtggcttgggatgtaattgaagctaaaaatct |
207 |
Q |
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| T |
10001107 |
tcagtgggcatgttgaatatgcggatagcctacatgttgaactccttgcaatttttattggattatcagtggcttgggatgtaattgaagctaaaaatgt |
10001008 |
T |
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| Q |
208 |
cacatgtagatcagattgcatgcaagccttatcattgatccaagacccaacacctcgaccacttatatactctggaataattgatgacatcaaggagctt |
307 |
Q |
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| T |
10001007 |
cacatgtagatctgattgcatgcaagccttatcattgatcgaagacccaacacctcgaccgcttatatactctggaataattgatgacatcaaggagctt |
10000908 |
T |
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| Q |
308 |
ctttctagagattggttagtgtcgttgacccacacttatagagaaggtaaccaatgtgccgattatatggcgaaattcggtgcaaattttatggattgta |
407 |
Q |
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| T |
10000907 |
ctttctagagattgattagtgtcgttgacccatacttatagagaaggtaaccaatgtgccgattatatggcgaaattcggtgcaaatttcattgattgta |
10000808 |
T |
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| Q |
408 |
caaaaactttttccgagcctccgtcttgtctacactccctactcaagtccgatgccaccggaattcaatacacaagaccagttagggtttttagcatgta |
507 |
Q |
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| T |
10000807 |
caaaaactttttccgagcctccgtcttgtctacattccctactcaagtccgatgccaccggaattcaatacacaagaccagttagtgtttttagcatgta |
10000708 |
T |
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| Q |
508 |
gtcattgtgtgatttgaatagtgtatattggaagtgtttatggtgtccatatattg-tatacatttggttcttggatttacgtac |
591 |
Q |
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| T |
10000707 |
gtcattgtgtgatttgaaaagtgtatattggaagtgtttatggtgtccatatattgttatacatttggttcttggatttatgtac |
10000623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 692 - 848
Target Start/End: Complemental strand, 10000522 - 10000366
Alignment:
| Q |
692 |
ctgaacatacacacctcatgctttgaaattctgacagaccgtcccattttacagctctaatttagattactaattacttggaatgtgtttcaaattattt |
791 |
Q |
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| T |
10000522 |
ctgaacatacacacctcatgatttgaaattctgacagaccatcccattttacagctctaatttagattactaattacttggaatgtgtttcaaattattt |
10000423 |
T |
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| Q |
792 |
ataaaaccaatgatgtgccataaatttttaacaaatcaatcaataaggaattgaagg |
848 |
Q |
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| T |
10000422 |
ataaaaccaatgatgtgtcataaatttttaacaaatcaatcaataaggaattgaagg |
10000366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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