View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4728-Insertion-4 (Length: 581)

Name: NF4728-Insertion-4
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4728-Insertion-4
NF4728-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-581)||(50090882-50091454)


Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Original strand, 50090882 - 50091454
Alignment:
Q  8 ctaaagactttgttctgcttgtgtggtttcnnnnnnnnnntgtagtcaatgaaccaaaatttattactccaacaagaggagttgtaacatgggaacaaat 107  Q
    |||||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50090882 ctaaagactttgttctgcttgtgtcgtttcaaaaaaaaaatgtagtcaatgaaccaaaatttattactccaacaagaggagttgtaacatgggaacaaat 50090981  T
Q  108 cgtcagcacttagtcgtttaacctaaaagcgtttaaatgagattaggcaggtctcttttatcttaagtaatgttctgggttcgaatccaatatcggacat 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50090982 cgtcagcactcagtcgtttaacctaaaagcgtttaaatgagattaggcaggtctcttttatcttaagtaatgttctgggttcaaatccaatatcggacat 50091081  T
Q  208 gcaatagcgtcaacatagatgatacctgatttacgccnnnnnnnnnngaagatctcaatcatttattttt--tattctcgttgtagtgaggtcaattgag 305  Q
    |||||| ||||||||| |||||||||| |||||||||           |||||||||||| |||||||||  | |||||||||||||||||||||||||     
T  50091082 gcaataacgtcaacatggatgatacctaatttacgccaaaaaaaa---aagatctcaatcgtttatttttatttttctcgttgtagtgaggtcaattgaa 50091178  T
Q  306 aagaaattgaatggtatagatctccattgcagtttcctaaaactttcacgttgaaacaagtattgccctcaagtgccgctcgtttgggtgccataaatac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50091179 aagaaattgaatggtatagatctccattgcagtttcctaaaactttcacattgaaacaagtattgccctcaagtgccgctcgtttgggtgccataaatac 50091278  T
Q  406 aaactacacctagtaggatatccaacaaaggattagccatgttttgaagaagatggatgatagattatacgtagaaatttttcgaccaaggacacaatta 505  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50091279 aagctacacctagtaggatatccaacaaaggattaaccatgttttgaagaagatggatgatagattatacatagaaatttttcgaccaaggacacaatta 50091378  T
Q  506 aagatatccagaaaagagtgccacttaagagcaccaaaagatggaattccgatacatgttaaaaactgttggaaga 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50091379 aagatatccagaaaagagtgccacttaagagcaccaaaagatggaattccgatacatgttaaaaactgttggaaga 50091454  T

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