View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4728_high_2 (Length: 242)
Name: NF4728_high_2
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4728_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37789699 - 37789475
Alignment:
| Q |
1 |
ccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatgtatggaa---caaaagcatataatagagtaact |
97 |
Q |
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| T |
37789699 |
ccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatgtatggaaaatcaaaagcatataatagagtaact |
37789600 |
T |
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| Q |
98 |
aatagtgtaaaataactgagaatataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctgga |
197 |
Q |
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| T |
37789599 |
aata----------actgataatataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctgga |
37789510 |
T |
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| Q |
198 |
gtaaggttgaacattgcgaacataaatgttgatga |
232 |
Q |
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| T |
37789509 |
gtaaggttgaacatagcgaacataaatgttgatga |
37789475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 37798361 - 37798286
Alignment:
| Q |
153 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttg |
228 |
Q |
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| T |
37798361 |
agtgagtacccaaataatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttg |
37798286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37800538 - 37800479
Alignment:
| Q |
8 |
tgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatg |
67 |
Q |
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| T |
37800538 |
tgttcccatcactttagcctttccttctgctagactccaattcaatttttccaatctatg |
37800479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 37780876 - 37780823
Alignment:
| Q |
153 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttg |
206 |
Q |
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| T |
37780876 |
agtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttg |
37780823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 37807900 - 37807836
Alignment:
| Q |
3 |
attaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatg |
67 |
Q |
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| T |
37807900 |
attactgttcctattactttggcctttccctctactaatccccaatttagcttttccaatctatg |
37807836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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