View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4728_low_1 (Length: 384)
Name: NF4728_low_1
Description: NF4728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4728_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 25071136 - 25070761
Alignment:
| Q |
1 |
aactaaaggaaaactagcaatcttattacaaaccaaacaacaatataatcataatgataacaaaccnnnnnnntaaatcataggctaatagaccaagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25071136 |
aactaaaggaaaactagcaatcttattacaaaccaaacaacaatataatcataatgataacaaaccaaaaaaataaatcataggctaatagaccaagaag |
25071037 |
T |
|
| Q |
101 |
aagtgcgaaataagaataatcaggtaaatttatgcaacctagactataataccaaatacaatttatagtactggttctatcaaaaaaccagttg------ |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25071036 |
aagtgcgaaataagaataatcaggtaaatttatgcaacctagaacataataccaaatacaatttatagtactggttctatcaaaaaaccagttgaaattt |
25070937 |
T |
|
| Q |
195 |
-----acacttgaaatatatgggaacaaactgattccgcctcaatgcaacaaggaaacactatacaatcaagcagaaagcttttgaaaaactatattgaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
25070936 |
ctcttacacttgaaatatatgggaacaaactgattccgtctcaatgcaacgaggaaacactatacaaccaagcagaaagcttttgaaaaactatatagaa |
25070837 |
T |
|
| Q |
290 |
aaatcgaatttttgctctgttgcaaccgaaccattttagttctacatcctttcaccttttagttagttcaacactt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25070836 |
aaatcgaatttttgctctgttgcaaccgaaccattttagttctacatcctttcaccttttagttagttcaacactt |
25070761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 25129111 - 25128736
Alignment:
| Q |
1 |
aactaaaggaaaactagcaatcttattacaaaccaaacaacaatataatcataatgataacaaaccnnnnnnntaaatcataggctaatagaccaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25129111 |
aactaaaggaaaactagcaatcttattacaaaccaaacaacaatataatcataatgataacaaaccaaaaaaataaatcataggctaatagaccaagaag |
25129012 |
T |
|
| Q |
101 |
aagtgcgaaataagaataatcaggtaaatttatgcaacctagactataataccaaatacaatttatagtactggttctatcaaaaaaccagttg------ |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25129011 |
aagtgcgaaataagaataatcaggtaaatttatgcaacctagaacataataccaaatacaatttatagtactggttctatcaaaaaaccagttgaaattt |
25128912 |
T |
|
| Q |
195 |
-----acacttgaaatatatgggaacaaactgattccgcctcaatgcaacaaggaaacactatacaatcaagcagaaagcttttgaaaaactatattgaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
25128911 |
ctcttacacttgaaatatatgggaacaaactgattccgtctcaatgcaacgaggaaacactatacaaccaagcagaaagcttttgaaaaactatatagaa |
25128812 |
T |
|
| Q |
290 |
aaatcgaatttttgctctgttgcaaccgaaccattttagttctacatcctttcaccttttagttagttcaacactt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25128811 |
aaatcgaatttttgctctgttgcaaccgaaccattttagttctacatcctttcaccttttagttagttcaacactt |
25128736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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