View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-10 (Length: 253)
Name: NF4729-Insertion-10
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 33401221 - 33401443
Alignment:
| Q |
8 |
attttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagttatttca |
107 |
Q |
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| T |
33401221 |
attttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgttatttca |
33401320 |
T |
|
| Q |
108 |
tcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401321 |
tcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactca |
33401420 |
T |
|
| Q |
208 |
actgtttcattccacatcaacac |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
33401421 |
actgtttcattccacatcaacac |
33401443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
105 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
204 |
Q |
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||||||||| ||||||| ||| || |||||||| || | ||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
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| Q |
205 |
tcaactg |
211 |
Q |
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||||||| |
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| T |
43600910 |
tcaactg |
43600904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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