View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-11 (Length: 240)
Name: NF4729-Insertion-11
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 29631772 - 29632003
Alignment:
| Q |
8 |
ccgtgcaacggacactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttccta |
107 |
Q |
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| T |
29631772 |
ccgtgcaacg-acactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttccta |
29631870 |
T |
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| Q |
108 |
ttcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatcct |
207 |
Q |
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| T |
29631871 |
ttcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatcct |
29631970 |
T |
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| Q |
208 |
tgggtcctcgctccgcctcatccttacggtggt |
240 |
Q |
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| T |
29631971 |
tgggtcctcgctccgcctcatccttacggtggt |
29632003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 29630663 - 29630893
Alignment:
| Q |
19 |
acactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgc |
118 |
Q |
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| T |
29630663 |
acactgcattcctaaggttctagaaggccgtgatgtggttggaatcgatgagactggtagtggtaaaacggcagcttttgcgcttcccattcttcaacgc |
29630762 |
T |
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| Q |
119 |
ctcggtga------gactccttttgg------tgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatcc |
206 |
Q |
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| T |
29630763 |
ctcgccgagcatccgaaacctttcggtgtgtatgtgtttgctctcgtgctgacgcccacgcgcgagcttgcgattcagctggcagaccagtttttggccc |
29630862 |
T |
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| Q |
207 |
ttgggtcctcgctccgcctcatccttacggt |
237 |
Q |
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| T |
29630863 |
ttgggtcctcgctcctccccagccttacggt |
29630893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 27664067 - 27663897
Alignment:
| Q |
19 |
acactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgc |
118 |
Q |
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| T |
27664067 |
acactgcatccctcagattctagctggccgtcatgtaatcggaatcgaccaaactggaagcggtaaaacagcggcatttgcgcttccgattctgcagcgg |
27663968 |
T |
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| Q |
119 |
ctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggc |
189 |
Q |
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| T |
27663967 |
cttgctgaacatacgtttggtgtgtttgcgcttgtggtgacgcccacgcgcgagcttgcgtttcagttggc |
27663897 |
T |
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