View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-2 (Length: 975)
Name: NF4729-Insertion-2
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 218 - 617
Target Start/End: Original strand, 7383592 - 7383990
Alignment:
| Q |
218 |
atttgtgaaaattcgactaatgtggccaaatttacaagtgcaatgagattgcacaagcataaaaaacttgaccttacgaccataatttcattcataatgt |
317 |
Q |
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| T |
7383592 |
atttgtgaaaattcgactaatgtggccaaatttacaagtgcaatgagattgcacaagcataaaaaactt-accttacgaccataatttcattcataatgt |
7383690 |
T |
|
| Q |
318 |
caacagagaatgcaatttaaaactttgagtataattagcaaaattaacatatattttcgttgtgtttgcagcaatgaaaacatctctaccagttttttgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7383691 |
caacagagaatgcaatttaaaactttgagtataattagcaaaattaacatatattttcgttgtgtttgcagcaatgaaaacatctctaccagttttttgt |
7383790 |
T |
|
| Q |
418 |
tgtcaaaacaatgtagttaaatgagtcaaaaatgttaatatcgcattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgtt |
517 |
Q |
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| T |
7383791 |
tgtcaaaacaatgtagttaaatgagtcaaaaatgttaatatcacattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgtt |
7383890 |
T |
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| Q |
518 |
ttaactaaaatcttacaactaccataatttccctcaaatgatttcttactataannnnnnnacaatgtagtaaaggatagtgaatcatataaaggcgagt |
617 |
Q |
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| T |
7383891 |
ttaactaaaatcttacaactaccataatttccctcaaatgatttcttactataattttcttacaatgtagtaaaggatagtgaatcatataaaggggagt |
7383990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 691 - 975
Target Start/End: Original strand, 7384066 - 7384347
Alignment:
| Q |
691 |
cgtcaataagtttgatagaaatatggtatttgatagagcattatgactctctttgattcatttagagaacaatcaaatctcatcttatttagtaggataa |
790 |
Q |
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| T |
7384066 |
cgtcaatgagtttgatagaaatatgatatttgatagagcattatgactctctttgattcatctaaagaacaatcaagtctcgtcttatttagtgggataa |
7384165 |
T |
|
| Q |
791 |
ggcttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacccatgatttggagggtccgtaaaagtgcagtttattaggta |
890 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
7384166 |
gacttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacctatgatttggagggtccgtaaaagtgcag-ttatta-gta |
7384263 |
T |
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| Q |
891 |
tcataaataacgccattcagccattggcttgagattattcaaaaaattagacttaagaactatgaatacaaagatacattgttag |
975 |
Q |
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| T |
7384264 |
tcataaataacgccattcagccatt-gcttgagactattcaaaaaattagacttaagaactatgaatgcagagatacattgttag |
7384347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 42599838 - 42599876
Alignment:
| Q |
40 |
tttaatcatttcattgatgataatattttatttgatctt |
78 |
Q |
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|
| T |
42599838 |
tttaatcgtttcattgatgataaaattttatttgatctt |
42599876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 699 - 737
Target Start/End: Complemental strand, 31337655 - 31337617
Alignment:
| Q |
699 |
agtttgatagaaatatggtatttgatagagcattatgac |
737 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| |
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| T |
31337655 |
agttggatagaaatatggtatttgatagaacattatgac |
31337617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 734
Target Start/End: Original strand, 17028863 - 17028900
Alignment:
| Q |
697 |
taagtttgatagaaatatggtatttgatagagcattat |
734 |
Q |
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|||||| |||||||||||||||||||||||| |||||| |
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| T |
17028863 |
taagttagatagaaatatggtatttgatagaacattat |
17028900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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