View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-4 (Length: 662)
Name: NF4729-Insertion-4
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 54950178 - 54950424
Alignment:
| Q |
7 |
agaaagccctacaaaatttatggtacataaatgaaactgaagaacacatcagtaagcgacgacatagtagacttgaccacactcgtaatagcgcagaaaa |
106 |
Q |
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| T |
54950178 |
agaaagctctacaaaatttatggtacataaatgaaactgaagaacacatcagcaagcgacgacatagtagacttgaccacactcgtaatagcgcagaaaa |
54950277 |
T |
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| Q |
107 |
tcgtagctatgcagaaatgcataaaccagatacacttataaaccaacctataacgcgaattatgaagtaaatcatgaacatttaaacgcaacaatgcaga |
206 |
Q |
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| T |
54950278 |
tcgtagctatgcagaaatgcataaaccagatacacttataaaccaacctataacgcgaattatgcagtaaatcatgaacatttaaacgcaacaatgcaga |
54950377 |
T |
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| Q |
207 |
atcgtatatatgggaaaattcacgtagcagcactaaacacaattgta |
253 |
Q |
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| T |
54950378 |
atcgtatatatgggaaaattcacgtagcagcacaaaacacaattgta |
54950424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 486 - 662
Target Start/End: Original strand, 54951156 - 54951334
Alignment:
| Q |
486 |
gttataagccaacaagaaaagtttgtttaccaaacacttttcatttgatcaaataagcttatataagttagttcaataaattattaatctatctaaccac |
585 |
Q |
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| T |
54951156 |
gttataagctaataagaaaagtttatttagcaaacacttttcatttgatcaaacaagcttatataagttagttcaataaattattaatctatctaaccac |
54951255 |
T |
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| Q |
586 |
aagaatcatcgatt-aactgttgggattttgtattatgatatttt-tctcacttttatatgcccttcgtccgtttctta |
662 |
Q |
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| T |
54951256 |
aagaatcatcgattcaactgttgggattttgtattatgatattttatctcacttttatatgcccttcgtccgtttctta |
54951334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 54950491 - 54950590
Alignment:
| Q |
320 |
caagattgagagaagagaagaattggtcatggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
419 |
Q |
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| T |
54950491 |
caagattgagagaagagaagaattgatcatggaattctgcccaaaactgacgacatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
54950590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 54944798 - 54944869
Alignment:
| Q |
348 |
atggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
419 |
Q |
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| T |
54944798 |
atggaattctgcccaaaaacgatgacatgcatctttacaaaagagtggcttcatcactatcaatcaaagaat |
54944869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 46334737 - 46334697
Alignment:
| Q |
508 |
ttgtttaccaaacacttttcatttgatcaaataagcttata |
548 |
Q |
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| T |
46334737 |
ttgtttaccaaacacgtctcatttgatcaaacaagcttata |
46334697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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