View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-5 (Length: 634)
Name: NF4729-Insertion-5
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Original strand, 52512056 - 52512657
Alignment:
| Q |
8 |
gataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct |
107 |
Q |
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| T |
52512056 |
gataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct |
52512155 |
T |
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| Q |
108 |
aaatgaaa----------agtagtattataataaggaagaagaatattattatta-----------aaaaagaatgaggagaaaagagaagaggactcac |
186 |
Q |
| |
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|||||||| ||||||||||||||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
52512156 |
aaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcac |
52512255 |
T |
|
| Q |
187 |
aaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaaca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512256 |
aaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaaca |
52512355 |
T |
|
| Q |
287 |
caaacatttaagacattgacgcctcgaaacaannnnnnnnnnnnnnnnnnnnnnnnnctatatgaatgcaattaattaagttaatgatgag----tgagt |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
52512356 |
caaacatttaagacattgacgcctcgaaacaacttcttcttcttcttcttcttcttcctatatgaatgcaattaattaagttaatgatgagtgagtgagt |
52512455 |
T |
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| Q |
383 |
gagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaagaatgatatccttgattttgaggaagagtggatttaacaata |
482 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512456 |
gagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaagaatgatatccttgattttgaggaagagtggatttaacaata |
52512555 |
T |
|
| Q |
483 |
aaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaattgcaatccattgagatatgaagaatag |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512556 |
aaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaattgcaatccattgagatatgaagaatag |
52512655 |
T |
|
| Q |
583 |
ag |
584 |
Q |
| |
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|| |
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| T |
52512656 |
ag |
52512657 |
T |
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