View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4729-Insertion-6 (Length: 630)

Name: NF4729-Insertion-6
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4729-Insertion-6
NF4729-Insertion-6
[»] chr8 (3 HSPs)
chr8 (7-625)||(31502013-31502631)
chr8 (7-625)||(31476649-31477267)
chr8 (7-625)||(31466803-31467421)
[»] chr5 (20 HSPs)
chr5 (556-612)||(9301187-9301243)
chr5 (556-612)||(9331603-9331659)
chr5 (556-612)||(9351331-9351387)
chr5 (556-612)||(9374136-9374192)
chr5 (556-618)||(9329391-9329453)
chr5 (556-600)||(9292377-9292421)
chr5 (556-612)||(9296972-9297028)
chr5 (556-612)||(9304805-9304861)
chr5 (556-612)||(9349635-9349691)
chr5 (556-600)||(9357014-9357058)
chr5 (15-207)||(9373613-9373805)
chr5 (556-615)||(9287839-9287898)
chr5 (15-207)||(9305192-9305384)
chr5 (556-612)||(9368242-9368298)
chr5 (53-186)||(9297380-9297513)
chr5 (110-207)||(9361024-9361121)
chr5 (27-143)||(9288284-9288400)
chr5 (28-207)||(9351721-9351900)
chr5 (28-99)||(9367720-9367791)
chr5 (51-99)||(9310119-9310167)


Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 31502013 - 31502631
Alignment:
Q  7 acaagtgatttctcaacatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaatt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31502013 acaagtgatttctcaccatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaatt 31502112  T
Q  107 cttcaaatcaaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttca 206  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31502113 cttcaaatcaaggaaaatgttcaagcccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaataagtgtgacacaatacaaattcttca 31502212  T
Q  207 cnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttgaagcaaatggatagcaaatttggcatgtcttcaaatttggaacttgatcaacacct 306  Q
    |                  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  31502213 caaaaaagatgaaaaaaaatgttaacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaattttggaacttgatcaacacct 31502312  T
Q  307 ttattctttgattagagtgtttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31502313 ttattctttgattagagtgtttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaag 31502412  T
Q  407 acaaccaagtggaaatttgttgctaaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgtcgaagcta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  31502413 acaaccaagtggaaatttgttgctaaaatgatgcacaaaggagtcataacatgtgaagataactcggataatgtcaatgagtttttgtgtgttgaagcta 31502512  T
Q  507 ccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  31502513 ccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggctttggagaaagtaattgaaagtattgagaa 31502612  T
Q  607 tggtttggaaaacttattt 625  Q
    |||||||||||||||||||    
T  31502613 tggtttggaaaacttattt 31502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 31476649 - 31477267
Alignment:
Q  7 acaagtgatttctcaacatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaatt 106  Q
    ||||||||||||||| |||  |||||| |||||  | |||||| ||||||||||||| |||||||| |||||||| ||||||||||| ||||| || |||    
T  31476649 acaagtgatttctcaccatcaaggtgaaaaatgtgtggaagagttgttggatagttctatgagaatcttggatatatgtggcatcacaagggacaccatt 31476748  T
Q  107 cttcaaatcaaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttca 206  Q
     | |||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  31476749 ttgcaaaccaaggaaaatgttcaagcccttcactcttctctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtggcagaatacaaattcttca 31476848  T
Q  207 cnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttgaagcaaatggatagcaaatttggcatgtcttcaaatttggaacttgatcaacacct 306  Q
    |                  ||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| ||| |    
T  31476849 caaaaaagatgaaaaaaaatgttaacaagttgatcacatctttgaagcacatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcactt 31476948  T
Q  307 ttattctttgattagagtgtttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaag 406  Q
    || || |||||||||||| ||||  |||||||||| |||||| || ||| |||||||| ||||||||||||| |||| | ||||||||||||||||||||    
T  31476949 ttcttgtttgattagagtatttagggaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtcaaag 31477048  T
Q  407 acaaccaagtggaaatttgttgctaaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgtcgaagcta 506  Q
    ||| | || ||||| ||||| |||||| ||||||||||||| || ||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  31477049 acagctaaatggaagtttgtggctaaactgatgcacaaaggggttataacatgtgaagataactcatataatgtcaatgagtttttgtgtgttgaagcta 31477148  T
Q  507 ccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31477149 ccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatgaaagattagaggctttggagaatgcaattgaaagtattgagaa 31477248  T
Q  607 tggtttggaaaacttattt 625  Q
    || |||||| |||||||||    
T  31477249 tgatttggagaacttattt 31477267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 31466803 - 31467421
Alignment:
Q  7 acaagtgatttctcaacatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaatt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31466803 acaagtgatttctcaccatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactaaggatacaatt 31466902  T
Q  107 cttcaaatcaaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttca 206  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  31466903 cttcaaatcaaggaaaatgttcaagcccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtggaagaatacaaatttttca 31467002  T
Q  207 cnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttgaagcaaatggatagcaaatttggcatgtcttcaaatttggaacttgatcaacacct 306  Q
    |                  ||||| |||||||||||||  ||||||||| |||||||| ||||||||  ||||   || ||| ||||||||||| |||||    
T  31467003 caaaactgatgaagaaaaatgtcaccaagttgatcacaagtttgaagcatatggatagtaaatttggggtgtcccaaattttagaacttgatcatcacct 31467102  T
Q  307 ttattctttgattagagtgtttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaag 406  Q
    ||  ||| | |||||||||||||  ||||| ||  ||||||| |||||| |||||||| ||||||||||||| |||| | |||||||||||||||| |||    
T  31467103 ttgctctataattagagtgtttagggaagtgattacaatgaacttgtctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtctaag 31467202  T
Q  407 acaaccaagtggaaatttgttgctaaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgtcgaagcta 506  Q
     |||| || ||||  || ||  | ||| | |||||||| || |  ||||||| |||||||||||||||  || ||||||||||    ||||| |||||||    
T  31467203 gcaactaaatggatgttggtgacaaaactaatgcacaagggtgctataacatttgaagataactcagaaaatatcaatgagttgcaatgtgtggaagcta 31467302  T
Q  507 ccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaa 606  Q
    | ||||  || ||||||||||||   |||| ||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31467303 ctttaaatacccttttaagtgaatccactattggcgaaaagtttcaggctgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaa 31467402  T
Q  607 tggtttggaaaacttattt 625  Q
    |||||| || |||||||||    
T  31467403 tggtttagagaacttattt 31467421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 9301243 - 9301187
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  9301243 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggttt 9301187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 9331659 - 9331603
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  9331659 tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggttt 9331603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 9351387 - 9351331
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  9351387 tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggttt 9351331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 612
Target Start/End: Original strand, 9374136 - 9374192
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  9374136 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggttt 9374192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 9329391 - 9329453
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaa 618  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| || |||||||| |||||    
T  9329391 tgcacatgaaagatttgaggctttggagaatgcagttgaaagtatagaaaatggtttagaaaa 9329453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 9292421 - 9292377
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtat 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  9292421 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtat 9292377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 9297028 - 9296972
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||    
T  9297028 tgcacatgatagatttgaggctttggagaatgcaattgaaagtatagaaaatggttt 9296972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 9304861 - 9304805
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||    
T  9304861 tgcacatgaaagatttgaggctttcgagaatgcaattgaaagtatagaaaatggttt 9304805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 612
Target Start/End: Original strand, 9349635 - 9349691
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||||||||||||| || |||||||||||||||||||||||||| || ||||||||    
T  9349635 tgcacatgaaagatttgaagctttggagaatgcaattgaaagtatagaaaatggttt 9349691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 9357014 - 9357058
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtat 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  9357014 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtat 9357058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 9373613 - 9373805
Alignment:
Q  15 tttctcaacatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaattcttcaaat 114  Q
    ||||||| |||  |||||||||||   | |||||| |||||||| ||||| ||| | |||||||||| ||||||||||| ||||| || ||  | |||||    
T  9373613 tttctcaccatcaaggtgagaaatttgtggaagagttgttggatggttcagtgaaagttttggatatctgtggcatcacaagggacaccatgttacaaat 9373712  T
Q  115 caaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcac 207  Q
     || ||||| |||||| | |||||||||| ||| || || ||||| || ||||||||  |||||| ||||||  |  |||| |||||||||||    
T  9373713 taaagaaaatgttcaatcacttcactcttctcttagaaggagaaagggagattcaagcattgaaacaagtgtagccgaatataaattcttcac 9373805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 556 - 615
Target Start/End: Complemental strand, 9287898 - 9287839
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttgga 615  Q
    ||||||||||||||| |||||||||||||||||||||||||  || || |||||||||||    
T  9287898 tgcacatgaaagatttgaggctttggagaatgcaattgaaatgatagaaaatggtttgga 9287839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 9305384 - 9305192
Alignment:
Q  15 tttctcaacatagaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaattcttcaaat 114  Q
    ||||||| |||  |||||||||||   | |||||| |||||||| ||||||||| ||| |||||||| |||||||| || ||||| || ||  | |||||    
T  9305384 tttctcaccatcaaggtgagaaatttgtggaagagttgttggatggttcaatgaaaatgttggatatatgtggcattacaagggacactatgttacaaat 9305285  T
Q  115 caaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcac 207  Q
     || ||||| |||||| | |||||||||| ||| || || | ||| || ||||||||  |||||| ||||||  || |||| ||||| |||||    
T  9305284 taaagaaaatgttcaatcacttcactcttctcttagaaggaaaaagggagattcaagcattgaaaaaagtgtagcagaatataaatttttcac 9305192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 556 - 612
Target Start/End: Original strand, 9368242 - 9368298
Alignment:
Q  556 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggttt 612  Q
    ||||| ||||||||| |||||||||||||||||||||||||  ||||| ||||||||    
T  9368242 tgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggttt 9368298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 9297513 - 9297380
Alignment:
Q  53 ttggatagttcaatgagaattttggatatttgtggcatcactagggatacaattcttcaaatcaaggaaaacgttcaaacccttcactcttgtctaagga 152  Q
    |||||| ||||| ||| | |||||||||| ||||||||||| ||||| || ||  | ||||| || ||||| |||||| | |||||||||| ||| || |    
T  9297513 ttggatggttcagtgaaagttttggatatctgtggcatcacaagggacaccatgttacaaattaaagaaaatgttcaatcacttcactcttctcttagaa 9297414  T
Q  153 gaagaaaaggtgattcaagtgttgaaagaagtgt 186  Q
    | ||||| || ||||||||  |||||| ||||||    
T  9297413 ggagaaagggagattcaagcattgaaacaagtgt 9297380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 9361024 - 9361121
Alignment:
Q  110 caaatcaaggaaaacgttcaaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcac 207  Q
    ||||| || ||||| |||||||| |||||||||| ||| || || |||||||| ||||||||  |||||| ||||||  || |||| |||||||||||    
T  9361024 caaattaaagaaaatgttcaaacacttcactcttctcttagaaggagaaaaggagattcaagcattgaaaaaagtgtagcagaatataaattcttcac 9361121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 9288400 - 9288284
Alignment:
Q  27 gaggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaattcttcaaatcaaggaaaacgt 126  Q
    ||||||||||||   | |||||| |||||||| ||||| ||| | |||||||||| ||||||||||| ||||| || ||  | || || || ||||| ||    
T  9288400 gaggtgagaaatttgtcgaagagttgttggatggttcagtgaaagttttggatatctgtggcatcacaagggacaccatgttacagattaaagaaaatgt 9288301  T
Q  127 tcaaacccttcactctt 143  Q
    |||| ||||||||||||    
T  9288300 tcaatcccttcactctt 9288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 9351900 - 9351721
Alignment:
Q  28 aggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactagggatacaattcttcaaatcaaggaaaacgtt 127  Q
    |||||||||||   | |||||| |||||||| ||||| ||| | |||||||||| ||||||||||| ||||| |  ||  | ||||| || ||||| |||    
T  9351900 aggtgagaaatttgtggaagagttgttggatggttcagtgaaagttttggatatatgtggcatcacaagggacatcatgttacaaattaacgaaaatgtt 9351801  T
Q  128 caaacccttcactcttgtctaaggagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcac 207  Q
    ||| |  ||||||||| ||| || || ||||| || || |||||  |||||| ||||||  || |||| |||||||||||    
T  9351800 caatcaattcactcttctcttagaaggagaaagggagaatcaagcattgaaaaaagtgtagcagaatataaattcttcac 9351721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 9367720 - 9367791
Alignment:
Q  28 aggtgagaaatgcattgaagaggtgttggatagttcaatgagaattttggatatttgtggcatcactaggga 99  Q
    |||||||||||   |||||||| |||||||| ||||| ||| |||||||||||| || |||||||| |||||    
T  9367720 aggtgagaaatttgttgaagagttgttggatggttcagtgaaaattttggatatctgcggcatcacaaggga 9367791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 9310119 - 9310167
Alignment:
Q  51 tgttggatagttcaatgagaattttggatatttgtggcatcactaggga 99  Q
    |||||||| ||||| ||| | |||||||||||||||||||||| |||||    
T  9310119 tgttggatggttcagtgaaagttttggatatttgtggcatcacaaggga 9310167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University