View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-7 (Length: 465)
Name: NF4729-Insertion-7
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-7 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 9245 - 8802
Alignment:
| Q |
17 |
ggtggtgggatcggaagaagaaggcgaacggagtggagagagtgtgagaagtgccagtatgaagaatgcgaagaagggagggattgaaattgggaaattt |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9245 |
ggtggtgggatcggaagaagaaggcgaacggagtg-agagagtgtgagaagtgccagtatgaagaatgcgaagaagggagagattgaaattgggaaattt |
9147 |
T |
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| Q |
117 |
gatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaag |
216 |
Q |
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| T |
9146 |
gatgggaagtagtctggcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaag |
9047 |
T |
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| Q |
217 |
gagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctctttc |
316 |
Q |
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| T |
9046 |
aagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctctttc |
8947 |
T |
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| Q |
317 |
tttgaagcgtgtaagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgcttagcggggaatttttcgaccnnnnnnnnngttctg |
416 |
Q |
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| T |
8946 |
tttgaagc--ttaagtgattatgagaatgagaaattttactttatatttgcatttggggaatgcttagcgggg-atttttcga-ctttttttttgttctg |
8851 |
T |
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| Q |
417 |
gcgggaaaattgggaaaatggggaaatgagtaatgatccttacttcttt |
465 |
Q |
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| T |
8850 |
gcgggaaaattgagaaaatggggaaatgagtaatgatccttacttcttt |
8802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 21909653 - 21909262
Alignment:
| Q |
8 |
acaatgacgggtggtgggatcggaagaagaaggcgaacggagtggagagagtgtgagaagtgccagtatgaagaatgcgaagaagggagggattgaaatt |
107 |
Q |
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| T |
21909653 |
acaatgacgg-tggtgggattggaagaagaaggtgaacggagtg-agatagtgtgggaggtgccagtatgaagaatgcggagaagagagagattgaaatt |
21909556 |
T |
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| Q |
108 |
gggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaaga |
207 |
Q |
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| T |
21909555 |
ggggaatttgattggaagtagtctggcggtgattggagagcagaagagtgggccatgtgaccatttagaagaaaggcctttagtgtgatcggagtgaaga |
21909456 |
T |
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| Q |
208 |
tgtgttaaggagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacact--------aa |
299 |
Q |
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| T |
21909455 |
tgtgttaagaaatatgcttcacttcctcttgcccaacgatctaccgatattaaaccatcttccatttttggtgacggagaaagaaacactgctgttaaaa |
21909356 |
T |
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| Q |
300 |
aagtgtgaacctctttctttgaagcgtgtaagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgcttagcggggaatttt |
395 |
Q |
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| T |
21909355 |
aagtgtgaacctctttctttg--gagtgtaagtgatgatgagaatgagaaattttcttttatatttttatttggggaatgcttaggcgggaatttt |
21909262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 26727951 - 26727891
Alignment:
| Q |
328 |
taagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgcttagcggg |
388 |
Q |
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| T |
26727951 |
taagtgatgatgagaatgagaaattttattttatatttgtatttggggaatgcttagcggg |
26727891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 26728050 - 26727972
Alignment:
| Q |
99 |
attgaaattgggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaa |
177 |
Q |
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|||||||||||| ||| |||||||||| ||| | || ||||||| ||||||||||||||||||||| || |||| |||| |
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| T |
26728050 |
attgaaattggggaatatgatgggaaggagtttggcagtgattgaagagcagaagagtgggccatgggagcattgagaa |
26727972 |
T |
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