View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4729-Insertion-8 (Length: 425)

Name: NF4729-Insertion-8
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4729-Insertion-8
NF4729-Insertion-8
[»] chr8 (1 HSPs)
chr8 (8-425)||(41854085-41854503)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 41854085 - 41854503
Alignment:
Q  8 ctactgtcacagctcactcttatctgatccatccatttgggcgcaacctttctgaaagcaatttcaggnnnnnnnnn-ttgttaggacaaaggagtttta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  41854085 ctactgtcacagctcactcttatctgatccatccatttgggcgcaacctttctgaaagcaatttcaggaagaaaaaagttgttaggacaaaggagtttta 41854184  T
Q  107 gtataaccaaaatttagctgatttctgtggtataaaactgttaccaagtgtgtctaataaatttaccttttctttgatttatttttaacttcttggtgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41854185 gtataaccaaaatttagctgatttctgtggtataaaactgttaccaagtgtgtctaataaatttaccttttctttgatttatttttaacttcttggtgat 41854284  T
Q  207 cttggaaggtcccatcaaagtcctcgctcagaggactcccattggtagacactggggattccggtaacgaagttattactggagtcactggctgtgactt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41854285 cttggaaggtcccatcaaagtcctcgctcagaggactcccattggtagacactggggattccggtaacgaagttattactggagtcactggctgtgactt 41854384  T
Q  307 agaagttgattcattacatcttaaaatttgtaaagccttttcataggaagataatatcatctgcatctgtgaatctcttgtgccaagggaatatggtgtc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41854385 agaagttgattcattacatcttaaaatttgtaaagccttttcataggaagataatatcatctgcatctgtgaatctcttgtgccaagggaatatggtgtc 41854484  T
Q  407 ctcaagtcttctttcagtc 425  Q
    |||||||||||||||||||    
T  41854485 ctcaagtcttctttcagtc 41854503  T

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