View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729-Insertion-9 (Length: 409)
Name: NF4729-Insertion-9
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 1107374 - 1106975
Alignment:
| Q |
8 |
ataattagtaacattcgcacaagcataaatacctcgtttcatttttcacccgacctatatgccctaaagcactattccatcccttcaattttcaaaatta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1107374 |
ataattagtaacattcgcacaagcataaatacctcgtttcatttttcactcaacctatatgccctaaagcacc-ttccatcccttcaattttcaaaatta |
1107276 |
T |
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| Q |
108 |
ccgtattgagctacaaaatatcatgcattgtcacaaatatgaatatagactaagtcatacatattaattcaaacaagaaattgtcttattttcgaccatt |
207 |
Q |
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| T |
1107275 |
ccgtattgagctacaaaatatcatgcattgtcacaaatatgaatatagacta-gtcatacatattaattcaaacaagaaattgtcttactttcgaccatt |
1107177 |
T |
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| Q |
208 |
agagaccatgcatggttttcagatatatctcaaaaccaccaagataaagtgaaaacaaaatgttgaaacattaacgctcaggcgaaagtaaagaagtttt |
307 |
Q |
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| T |
1107176 |
agagaccatgcatggttttcagatatatctcaaaaccactaagataaagtgaaaacaaaatgttgaaacattaacgctcaggcgaaagtaaagaagtttt |
1107077 |
T |
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| Q |
308 |
tgatgaagataaggaacgggattaactcaagctgatgctggagtgtccttgactgattcacgccatgcatactctcttgcaccatctttgtcaacaattt |
407 |
Q |
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| T |
1107076 |
tgatgaagataaggaacaggattgactcaagctgaagcaggagtgtccttgactgattcacgccatgcatactctcttgcaccatctttgtcaacaattt |
1106977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 3736208 - 3736146
Alignment:
| Q |
347 |
ggagtgtccttgactgattcacgccatgcatactctcttgcaccatctttgtcaacaattttg |
409 |
Q |
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| T |
3736208 |
ggagtgtcattcactgattgacgccatgcatactctcttgcaccatccttgtcaacaattttg |
3736146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 22981157 - 22981552
Alignment:
| Q |
8 |
ataattagtaacattcgcacaagcataaatacctcgtttcatttttcacccgacctatatgccctaaagcactattccatcccttcaattttcaaaatta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22981157 |
ataattagtaacattcgcacaagcataaatacctcgtttcatttttcactcaacctatatgccctaatgcactattccatcccttcaattttcaaaatta |
22981256 |
T |
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| Q |
108 |
ccgtattgagctacaaaatatcatgcattgtcacaaatatgaatatagactaagtcatacatattaattcaaacaagaaattgtcttattttcgaccatt |
207 |
Q |
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| T |
22981257 |
ccgtattgagctacaaaatatcatgcattgtcacaaatatgaatatagactaagtcatacatattaattcaaacaagaaattgtcttactttcgaccatt |
22981356 |
T |
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| Q |
208 |
agagaccatgcatggttttcagatatatctcaaaaccaccaagataaagtgaaaacaaaatgttgaaacattaacgctcaggcgaaagtaaagaagtttt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22981357 |
agagaccatgcatggttttcagatatatctcaaaaccactaagataaagtgaaaacaaaatgttgaaacattaacgctcaggcgaaagtaaagaagtttt |
22981456 |
T |
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| Q |
308 |
tgatgaagataaggaacgggattaactcaagctgatgctggagtgtccttgactgattcacgccatgcatactctcttgcaccatctttgtcaacaattt |
407 |
Q |
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| T |
22981457 |
tgatgaagataaggaacaggattgactcaagctgatgcatgagtgtccttgactgattcacgccatg------ctcttgcaccatctttgtcaacaattt |
22981550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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