View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4729_high_3 (Length: 238)
Name: NF4729_high_3
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729_high_3 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2632137 - 2631916
Alignment:
| Q |
1 |
atgaaattatttaagatacatacctcttcaaattccaatattcaagttcaaatattgatatgttacatacctcttcttgggattcaccacactgacaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2632137 |
atgaaattatttaagatacatacctcttcaaattccaatattcaagttcaaatattgatatgttacatacctcttcttgggattcaccacactgacaaag |
2632038 |
T |
|
| Q |
101 |
aaatccctctctgccaggtttctacaatgatttggaatcatagttaggcataaaaaatcatgagcgatgagtttctcccacaattttgatttaagcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2632037 |
aaatccctctctgccaggtttctacaatgatttggaatcatagttaggcataaaaaatcatgagcgatgagtttctcccacaattttgatttaagcttga |
2631938 |
T |
|
| Q |
201 |
tctgtgggtttgttgtgtttta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2631937 |
tctgtgggtttgttgtgtttta |
2631916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7875 - 8096
Alignment:
| Q |
1 |
atgaaattatttaagatacatacctcttcaaattccaatattcaagttcaaatattgatatgttacatacctcttcttgggattcaccacactgacaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7875 |
atgaaattatttaagatacatacctcttcaaattccaatattcaagttcaaatattgatatgttacatacctcttcttgggattcaccacactgacaaag |
7974 |
T |
|
| Q |
101 |
aaatccctctctgccaggtttctacaatgatttggaatcatagttaggcataaaaaatcatgagcgatgagtttctcccacaattttgatttaagcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7975 |
aaatccctctctgccaggtttctacaatgatttggaatcatagttaagcataaaaaatcatgagcgatgagtttctcccacaattttgatttaagcttga |
8074 |
T |
|
| Q |
201 |
tctgtgggtttgttgtgtttta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8075 |
tctgtgggtttgttgtgtttta |
8096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 45094 - 45030
Alignment:
| Q |
158 |
tcatgagcgatgagtttctcccacaattttgatttaagcttgatctgtgggtttgttgtgtttta |
222 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45094 |
tcatgagtgatgagtttctcccacaattttgatttaagcttgatatgtgggtttgttgtgtttta |
45030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 38315753 - 38315687
Alignment:
| Q |
158 |
tcatgagcgatgagtttctcccacaattttgatttaagc--ttgatctgtgggtttgttgtgtttta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38315753 |
tcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgtttta |
38315687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University