View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4729_low_1 (Length: 472)

Name: NF4729_low_1
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4729_low_1
NF4729_low_1
[»] chr6 (64 HSPs)
chr6 (13-450)||(26811481-26811920)
chr6 (88-450)||(26949633-26949995)
chr6 (13-298)||(26617746-26618031)
chr6 (13-298)||(26723674-26723959)
chr6 (92-450)||(27214389-27214750)
chr6 (92-450)||(27234478-27234839)
chr6 (88-450)||(26848632-26848994)
chr6 (88-443)||(25071638-25071993)
chr6 (88-441)||(26975033-26975386)
chr6 (88-443)||(26635669-26636024)
chr6 (88-443)||(26741635-26741990)
chr6 (292-443)||(27665174-27665325)
chr6 (88-443)||(26959144-26959500)
chr6 (300-448)||(26617300-26617441)
chr6 (300-448)||(26723228-26723369)
chr6 (92-341)||(25579800-25580049)
chr6 (92-341)||(26142946-26143195)
chr6 (92-341)||(25538621-25538870)
chr6 (220-338)||(28181198-28181316)
chr6 (106-341)||(27337936-27338171)
chr6 (106-341)||(27398676-27398911)
chr6 (92-341)||(26056007-26056256)
chr6 (92-341)||(26075977-26076226)
chr6 (88-338)||(28185450-28185700)
chr6 (88-338)||(28297566-28297816)
chr6 (88-338)||(28514257-28514507)
chr6 (220-338)||(28227034-28227152)
chr6 (246-350)||(2184360-2184464)
chr6 (131-338)||(28242888-28243095)
chr6 (220-338)||(28234648-28234765)
chr6 (220-338)||(28325565-28325683)
chr6 (198-443)||(26937073-26937318)
chr6 (123-418)||(24715586-24715884)
chr6 (237-341)||(27677616-27677720)
chr6 (237-341)||(27679027-27679131)
chr6 (163-350)||(28098297-28098484)
chr6 (141-443)||(27718285-27718587)
chr6 (293-350)||(2184970-2185027)
chr6 (220-341)||(26048926-26049047)
chr6 (220-341)||(26070095-26070216)
chr6 (275-448)||(26341974-26342147)
chr6 (220-330)||(26623068-26623178)
chr6 (92-341)||(26656070-26656319)
chr6 (220-330)||(26729046-26729156)
chr6 (92-341)||(26762041-26762290)
chr6 (219-341)||(26823921-26824043)
chr6 (88-158)||(26937370-26937440)
chr6 (131-177)||(28234808-28234854)
chr6 (397-443)||(29826006-29826052)
chr6 (385-444)||(28781117-28781176)
chr6 (385-444)||(28786256-28786315)
chr6 (385-444)||(28792377-28792436)
chr6 (92-178)||(25481986-25482072)
chr6 (397-443)||(27229211-27229257)
chr6 (141-443)||(27610908-27611210)
chr6 (385-443)||(27698644-27698702)
chr6 (253-331)||(27706420-27706498)
chr6 (385-443)||(27724995-27725053)
chr6 (216-338)||(29826111-29826233)
chr6 (276-341)||(28150018-28150083)
chr6 (273-341)||(25481823-25481891)
chr6 (117-173)||(27664999-27665055)
chr6 (131-183)||(28181353-28181405)
chr6 (131-183)||(28227189-28227241)
[»] chr2 (2 HSPs)
chr2 (88-446)||(17993537-17993895)
chr2 (216-256)||(3279857-3279897)
[»] chr4 (10 HSPs)
chr4 (180-443)||(5090899-5091162)
chr4 (220-341)||(18655449-18655570)
chr4 (220-341)||(18679539-18679660)
chr4 (91-176)||(18699243-18699328)
chr4 (132-176)||(18655361-18655405)
chr4 (132-176)||(18723969-18724013)
chr4 (132-176)||(18731388-18731432)
chr4 (91-176)||(18679410-18679495)
chr4 (220-341)||(18699372-18699493)
chr4 (220-341)||(18731476-18731597)
[»] scaffold0038 (6 HSPs)
scaffold0038 (220-338)||(34809-34927)
scaffold0038 (220-338)||(27532-27650)
scaffold0038 (131-338)||(43050-43257)
scaffold0038 (220-338)||(116880-116998)
scaffold0038 (131-177)||(34970-35016)
scaffold0038 (131-183)||(27687-27739)
[»] scaffold0019 (2 HSPs)
scaffold0019 (123-341)||(58170-58388)
scaffold0019 (397-450)||(58444-58497)
[»] chr1 (3 HSPs)
chr1 (132-341)||(268241-268450)
chr1 (92-179)||(28127523-28127610)
chr1 (92-179)||(28164207-28164294)
[»] chr8 (2 HSPs)
chr8 (132-341)||(29273667-29273876)
chr8 (303-380)||(31903893-31903970)
[»] chr5 (1 HSPs)
chr5 (360-441)||(16688992-16689073)
[»] scaffold0349 (2 HSPs)
scaffold0349 (237-443)||(3423-3630)
scaffold0349 (385-443)||(14505-14563)
[»] scaffold1254 (1 HSPs)
scaffold1254 (385-444)||(67-126)
[»] scaffold0419 (1 HSPs)
scaffold0419 (385-444)||(7503-7562)
[»] scaffold0277 (1 HSPs)
scaffold0277 (385-444)||(13782-13841)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 26811920 - 26811481
Alignment:
Q  13 atgaatcgtcaattgtaattgaagacaaacaataaacataagaagactaaataagagtgaaatgaagaa--gcgtacttgaaatgatagccagataagtt 110  Q
    |||||| |||||||| |||||||||||||||||| |||||| ||    |||||||||||||||||||||  || |||||||||||| |||||||||||||    
T  26811920 atgaattgtcaattgaaattgaagacaaacaatatacataaaaaagaaaaataagagtgaaatgaagaatagcttacttgaaatgaaagccagataagtt 26811821  T
Q  111 cgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatac 210  Q
      || |||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  26811820 accaacttggttaagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaacatttcttcaaactcagtaagtgcttcaccatac 26811721  T
Q  211 ctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagtt 310  Q
     | ||| | |||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||  |||||||||||||||| |||||| |||||||| |    
T  26811720 ttgttattttgatgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaagct 26811621  T
Q  311 catctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtc 410  Q
    |||||| |||||| || ||||| ||||||||||  |||||||||||||  |||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  26811620 catctaaacaaaacgacgaagttgcatagttctcagagaatacaataatggcaatcctagagtgttcaatgctcttgaggagcgaaggtgtgatttcgtc 26811521  T
Q  411 acctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26811520 acctctctgaagctccttgtcatcaatgaaggttcggatt 26811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 88 - 450
Target Start/End: Complemental strand, 26949995 - 26949633
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| |||||||||||||  ||| ||| ||  |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||     
T  26949995 ttgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcat 26949896  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || ||||||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||  |||||||||||    
T  26949895 gcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaa 26949796  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||| | ||| || || || ||||  ||||| || || |||||||| || |||    
T  26949795 gtagtgaatgatatggacaagttcgtctaaacaaaatgaagaagaagcatattccttagaaaagacgataatggcaattctcgattcttcaattctcttg 26949696  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  26949695 aggagtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggatt 26949633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 26618031 - 26617746
Alignment:
Q  13 atgaatcgtcaattgtaattgaagacaaacaataaacataagaagactaaataagagtgaaatgaagaagcgtacttgaaatgatagccagataagttcg 112  Q
    |||||| |||||||| ||||||||||||||||||  ||||||||    |||||||||||||||||||||| || ||||||||||||||||||||||||      
T  26618031 atgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatagccagataagttat 26617932  T
Q  113 cagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacct 212  Q
     |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26617931 aagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaaactcagtaagtgcttcaccatacct 26617832  T
Q  213 attagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatga 298  Q
     ||| | | ||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  26617831 gttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaagtagtgaatga 26617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 26723959 - 26723674
Alignment:
Q  13 atgaatcgtcaattgtaattgaagacaaacaataaacataagaagactaaataagagtgaaatgaagaagcgtacttgaaatgatagccagataagttcg 112  Q
    |||||| |||||||| ||||||||||||||||||  ||||||||    |||||||||||||||||||||| || ||||||||||||||||||||||||      
T  26723959 atgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatagccagataagttat 26723860  T
Q  113 cagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacct 212  Q
     |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26723859 aagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaaactcagtaagtgcttcaccatacct 26723760  T
Q  213 attagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatga 298  Q
     ||| | | ||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  26723759 gttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaagtagtgaatga 26723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 92 - 450
Target Start/End: Complemental strand, 27214750 - 27214389
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27214750 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27214651  T
Q  192 agaaagtgctgcaccatacctattagtct---gatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 288  Q
    || ||| ||| ||||||| || ||  | |   ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27214650 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27214551  T
Q  289 tagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttga 388  Q
     | ||| |||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||  | |||     
T  27214550 caatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagttctctgagaatacaataacagaaatcctcgagtcttcaattttcttgt 27214451  T
Q  389 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27214450 ggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 27214389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 92 - 450
Target Start/End: Original strand, 27234478 - 27234839
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27234478 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27234577  T
Q  192 agaaagtgctgcaccatacctattagtct---gatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 288  Q
    || ||| ||| ||||||| || ||  | |   ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27234578 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27234677  T
Q  289 tagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttga 388  Q
     | ||| |||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||  | |||     
T  27234678 caatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagttctctgagaatacaataacagaaatcctcgagtcttcaattttcttgt 27234777  T
Q  389 ggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27234778 ggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 27234839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 88 - 450
Target Start/End: Complemental strand, 26848994 - 26848632
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| ||||| |||| ||||||| ||||||||||  |||| ||||||||| ||| |||||||||||| |||   ||||||     
T  26848994 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttcat 26848895  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || ||||||| ||||||| ||| || |||||||||| || ||||||||||| |   |||||||||| |||| ||| |  | || |||||||||| |    
T  26848894 gcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgga 26848795  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
    | | |||||||| ||||||||||| || | |||||| |||||||| ||||||||||  |||||||||| ||  | |||||| |||||||||||| | |||    
T  26848794 gcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagttctcagagaatacaagaatggaaatcctcgagtcttcaatgttcttg 26848695  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||    
T  26848694 aggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggttcggatt 26848632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 88 - 443
Target Start/End: Complemental strand, 25071993 - 25071638
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    ||||||||||  ||||||||||| ||||||| || ||||||| |||||||| || ||||||||||||||| || |||||||||||| ||||  ||||||     
T  25071993 ttgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttcat 25071894  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || || || | ||||||| || | | || | | ||| || || ||||||||     ||||||||| ||| ||||| || |||||||||||||||||    
T  25071893 gcttagcaaatgattcaccataactgtcattcagttttcgcacctgcgaaggttcggtgccatagaaaattggtagaacaaggcgactcttttccttgaa 25071794  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| ||||||||  || ||||| || ||||  ||||| || || ||||||||||| |||    
T  25071793 gtagtgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagtctttagagaagacgataatggcaattctcgaatcttcaatgctcttg 25071694  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
     |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  25071693 cggagcgaaggtgtgatttcgtcacctctcttaagctctttgtcatcaataaaggt 25071638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 88 - 441
Target Start/End: Complemental strand, 26975386 - 26975033
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||  |||||||||||| |||||  || |||||||| ||||  ||||||     
T  26975386 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacccctcttcat 26975287  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || |||| || ||||||| || | | || | |  || || |||||||||||     |||||||||| |||| ||| |  | || |||||| ||| |    
T  26975286 gcttagcaagtacttcaccataactgtcattcagtttacgcacatgagaaggttctgtgccatagaaaacaggaataactatgctacccttttcattgga 26975187  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
      | |||||||| ||||||||||| || | |||||||||||||| ||||||||  || ||||| || ||||  | |||||| |||||||||||||| |||    
T  26975186 acaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttg 26975087  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaag 441  Q
    ||||||||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  26975086 aggagcgaaggtgtgatttcgtccccttttttaagctccttgtcatcaatgaag 26975033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 88 - 443
Target Start/End: Complemental strand, 26636024 - 26635669
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||||| |||   ||||||     
T  26636024 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttcat 26635925  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || ||| ||| ||||||| || | | |  | | ||| || |||||||||||     |||||||||| |||| |||    | || |||||| ||| |    
T  26635924 gcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttcggtgccatagaaaacaggaataaccttgctacccttttcattgga 26635825  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
    | | |||||||| |||||||||||||| | ||||||  |||||| |||||| | ||| ||||| || ||||  |||||||| || ||||||||||| |||    
T  26635824 gcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttg 26635725  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||||||||||||||| || ||| | | ||||||||||||||||||||||||    
T  26635724 aggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaaggt 26635669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 88 - 443
Target Start/End: Complemental strand, 26741990 - 26741635
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||||| |||   ||||||     
T  26741990 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttcat 26741891  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
     || || ||| ||| ||||||| || | | |  | | ||| || |||||||||||     |||||||||| |||| |||    | || |||||| ||| |    
T  26741890 gcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttcggtgccatagaaaacaggaataaccttgctacccttttcattgga 26741791  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 387  Q
    | | |||||||| |||||||||||||| | ||||||  |||||| |||||| | ||| ||||| || ||||  |||||||| || ||||||||||| |||    
T  26741790 gcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttg 26741691  T
Q  388 aggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||||||||||||||| || ||| | | ||||||||||||||||||||||||    
T  26741690 aggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaaggt 26741635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 292 - 443
Target Start/End: Original strand, 27665174 - 27665325
Alignment:
Q  292 tgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgagga 391  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||  |||||||| || ||||||||||| ||  |||    
T  27665174 tgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagttcttagagaatataataatggcaatcctcgattcttcaatgctcttccgga 27665273  T
Q  392 gcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    | ||||||||||||||||||||  |  |||||||||||||||||||||||||    
T  27665274 gtgaaggtgtgatttcgtcaccagttggaagctccttgtcatcaatgaaggt 27665325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 88 - 443
Target Start/End: Complemental strand, 26959500 - 26959144
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| ||||||| |||   ||||||     
T  26959500 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaaactgctcttcat 26959401  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaa-cgagacgactcttttccttga 286  Q
     || || ||| ||| ||||||| ||   | |  | | ||| || |||||||||||     |||||||||| |||| || || | | ||  ||||| |||     
T  26959400 gcttagcaagcgcttcaccataactgccatttagttttcgcacatgagaaggttctgtgccatagaaaacaggaataatcgtg-ctacctttttcattgg 26959302  T
Q  287 agtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgct-tt 385  Q
    || | |||||||| |||||||||||||| | | |||| ||||||| |||||| | ||| ||||| || ||||  |||||||| |||||||||||||| ||    
T  26959301 agaaatgaatgatgtggacaagttcatccaaataaaacgaagaagaagcatattccttagagaaaacgataatggcaatcctcgagtcttcaatgctctt 26959202  T
Q  386 tgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||| ||||||||||||||||| || ||| | | |||||| |||||||||||||||||    
T  26959201 tgagaagcgaaggtgtgatttcatccccttttttaagctctttgtcatcaatgaaggt 26959144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 300 - 448
Target Start/End: Complemental strand, 26617441 - 26617300
Alignment:
Q  300 atggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggt 399  Q
    ||||||||||||||||| |||||||||||||| ||||||||  || ||||| |||| ||  ||||| || |||| ||||||||       ||||||||||    
T  26617441 atggacaagttcatctaaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggt 26617349  T
Q  400 gtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcgga 448  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26617348 gtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcgga 26617300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 300 - 448
Target Start/End: Complemental strand, 26723369 - 26723228
Alignment:
Q  300 atggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggt 399  Q
    ||||||||||||||||| |||||||||||||| ||||||||  || ||||| |||| ||  ||||| || |||| ||||||||       ||||||||||    
T  26723369 atggacaagttcatctaaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggt 26723277  T
Q  400 gtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcgga 448  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26723276 gtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcgga 26723228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 25580049 - 25579800
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  25580049 aatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 25579950  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| | || ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25579949 agtaagatact-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25579851  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25579850 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25579800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 26143195 - 26142946
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  26143195 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 26143096  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| |||||||  |   | |||||| ||||| ||||| ||||||||||||||||||||| ||||  || |  | |||||||  |||| || |    
T  26143095 agtaagatgct-caccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagca 26142997  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26142996 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26142946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 25538870 - 25538621
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| ||||||||||||||||  |||||||| ||||| ||||||  ||     
T  25538870 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgctt 25538771  T
Q  192 ag-aaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| ||||||| ||   | ||||||||||||  |||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25538770 agtaaaatgct-caccataactcccactctgatgtcgtaactgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25538672  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25538671 gtgaatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25538621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 28181316 - 28181198
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| ||||||||||| || |  |    
T  28181316 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttcgtccaagc 28181217  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||||||||||| ||||||    
T  28181216 aaaatgaagaagaagcata 28181198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 341
Target Start/End: Original strand, 27337936 - 27338171
Alignment:
Q  106 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 204  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27337936 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27338034  T
Q  205 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatgga 304  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || |||||||||| || | |||   || || | ||  |||| || |||||||||| ||||    
T  27338035 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtgga 27338134  T
Q  305 caagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||| || |  |||||||||||||  ||||||||    
T  27338135 caagttcgtccaagcaaaatgaagaagatgcatagtt 27338171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 341
Target Start/End: Original strand, 27398676 - 27398911
Alignment:
Q  106 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 204  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27398676 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27398774  T
Q  205 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatgga 304  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || |||||||||| || | |||   || || | ||  |||| || |||||||||| ||||    
T  27398775 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtgga 27398874  T
Q  305 caagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||| || |  |||||||||||||  ||||||||    
T  27398875 caagttcgtccaagcaaaatgaagaagatgcatagtt 27398911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 26056256 - 26056007
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26056256 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26056157  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||   ||| || |    
T  26056156 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagca 26056058  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26056057 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26056007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 26076226 - 26075977
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26076226 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26076127  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||   ||| || |    
T  26076126 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagca 26076028  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26076027 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26075977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 338
Target Start/End: Complemental strand, 28185700 - 28185450
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||| | | |||||||||||||||| | | |  |     
T  28185700 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatat 28185601  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
      |||   ||||||  |||||| ||    || |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||    
T  28185600 gatcatccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaa 28185501  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 338  Q
    | ||| |||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28185500 gcagttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 338
Target Start/End: Original strand, 28297566 - 28297816
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28297566 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28297665  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28297666 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28297765  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 338  Q
    | |||||||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28297766 gcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 338
Target Start/End: Complemental strand, 28514507 - 28514257
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28514507 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28514408  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 287  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28514407 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28514308  T
Q  288 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 338  Q
    | |||||||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28514307 gcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 28227152 - 28227034
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| ||||||||||| || |  |    
T  28227152 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttcgtccaagc 28227053  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||||||||||| ||||||    
T  28227052 aaaatgaagaagaagcata 28227034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 2184464 - 2184360
Alignment:
Q  246 atcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttcttt 345  Q
    ||||||||||||||| ||||| || || | ||||  |||| ||||  ||||||| ||||||||||| || | |||||||||||||| |||||||||||||    
T  2184464 atcatagaaaactggtagaaccaggcgtccctttgacttggagtaacgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttcttt 2184365  T
Q  346 gagaa 350  Q
    |||||    
T  2184364 gagaa 2184360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 338
Target Start/End: Complemental strand, 28243095 - 28242888
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 230  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  28243095 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 28242996  T
Q  231 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaa 330  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| ||||||||||| || |  ||||||||||||    
T  28242995 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaa 28242896  T
Q  331 gtagcata 338  Q
    | ||||||    
T  28242895 gaagcata 28242888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 28234765 - 28234648
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| || || || ||||||| |||| | | |||||| ||||||||||| || |  |    
T  28234765 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagttcgtccaagc 28234667  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||||||||||| ||||||    
T  28234666 aaaatgaagaagaagcata 28234648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 28325683 - 28325565
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||| |  |    
T  28325683 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatccaagc 28325584  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||| ||||||| ||||||    
T  28325583 aaaaggaagaagaagcata 28325565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 443
Target Start/End: Complemental strand, 26937318 - 26937073
Alignment:
Q  198 tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatg 297  Q
    |||||||||||| ||   ||| || ||||| ||||||||||| ||||| ||||||||||  || | ||  ||| |||  |||  ||||||| ||| || |    
T  26937318 tgctgcaccataactcccagtttggtgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacg 26937219  T
Q  298 atatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaag 397  Q
    || ||||||||||| || | ||||||||||||||| ||||||||  | |||||||||   |  ||||||| ||| ||||||||    ||||  || || |    
T  26937218 atgtggacaagttcgtccaaacaaaatgaagaagtggcatagttgatagagaatacaggtatggcaatcccggaatcttcaattgccttgacaagtgatg 26937119  T
Q  398 gtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||||| || ||||  || |||||||||||||||||||||||    
T  26937118 gtgtgatttcttctcctccatggagctccttgtcatcaatgaaggt 26937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 418
Target Start/End: Complemental strand, 24715884 - 24715586
Alignment:
Q  123 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctga 222  Q
    ||||||||||||| ||||| ||||||| ||||||| || |||||||||||| ||||  ||||||  || || ||| ||| ||||||| || | | |  |     
T  24715884 aagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaacccgtcttcatgcttagcaagagcttcaccataactgtcatttagt 24715785  T
Q  223 tgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaa 322  Q
    | ||| || ||||||||||||    |||||||||| |||| ||| |  | || ||| |  |||||| | || ||||| |||  ||||||  ||| |||||    
T  24715784 tttcgcacatgagaaggttccgtgccatagaaaacaggaataaccatgccacccttgttattgaagcaatggatgatgtgggaaagttcgcctaaacaaa 24715685  T
Q  323 atgaagaagtagcatagttc---tttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctct 418  Q
    ||||||||| ||||||||     || ||||| |||||||  |||||  | |||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  24715684 atgaagaagaagcatagtctaatttagagaagacaataatggcaattttcgagtcttcgatgctcttgaggagcgaagatgtgatttcatcacctctct 24715586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 27677616 - 27677720
Alignment:
Q  237 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagca 336  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  |||    
T  27677616 aggttccacagcaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggca 27677715  T
Q  337 tagtt 341  Q
    |||||    
T  27677716 tagtt 27677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 27679131 - 27679027
Alignment:
Q  237 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagca 336  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  |||    
T  27679131 aggttccacaccaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggca 27679032  T
Q  337 tagtt 341  Q
    |||||    
T  27679031 tagtt 27679027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 350
Target Start/End: Original strand, 28098297 - 28098484
Alignment:
Q  163 ttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaa 262  Q
    ||||||||||||||||| ||||||  || ||  | |||| ||||||| ||    ||||||||||| ||||||||||||||||| ||| | ||||  ||||    
T  28098297 ttgttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaa 28098396  T
Q  263 gaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaa 350  Q
     |||||  | || |||||| | | |   ||||||||| |||||||||||||| | ||||||  |||||| |||||||||||| |||||    
T  28098397 aaacgaagcaacccttttcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaa 28098484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 443
Target Start/End: Original strand, 27718285 - 27718587
Alignment:
Q  141 ctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggt 240  Q
    |||||||| ||||||||| ||||| | |||||| ||||| | ||||  |||||  | |||| ||||||| |||    |||||||||| |||| || ||||    
T  27718285 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggt 27718384  T
Q  241 tccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagt 340  Q
    |||||  |  ||||||| || | |||||| |||| ||||  |||| || ||||||| || ||||||||||| || | |||||| |||||||  |||||||    
T  27718385 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27718484  T
Q  341 tctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaa 440  Q
    |  | || || |||  ||    |||||| || || ||||||   |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||    
T  27718485 tgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaa 27718584  T
Q  441 ggt 443  Q
    |||    
T  27718585 ggt 27718587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 2185027 - 2184970
Alignment:
Q  293 gaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaa 350  Q
    ||||||||||||||||||| || | |||||||||||||| |||||||| |||||||||    
T  2185027 gaatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagtcctttgagaa 2184970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 26049047 - 26048926
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||||| ||||| ||||||||||||||| ||||| || |  || |  | |||||||  |||| || |||||||||| ||||||||||| || | ||    
T  26049047 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26048948  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  26048947 aaaatgaagaagatgcatagtt 26048926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 26070216 - 26070095
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||||| ||||| ||||||||||||||| ||||| || |  || |  | |||||||  |||| || |||||||||| ||||||||||| || | ||    
T  26070216 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26070117  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  26070116 aaaatgaagaagatgcatagtt 26070095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 448
Target Start/End: Original strand, 26341974 - 26342147
Alignment:
Q  275 tcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtc 374  Q
    ||||| |||||||| | |||||||| ||||||||||| || | |||||| ||||||| |||||||||  ||||||| |    ||    ||||||||| ||    
T  26341974 tctttgccttgaagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactc 26342073  T
Q  375 ttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcgga 448  Q
    |||||||  |||||  || ||  ||||||||| ||||||||  ||||||||| | |||||||||||||| ||||    
T  26342074 ttcaatggctttgacaagtgattgtgtgattttgtcacctccatgaagctccctatcatcaatgaaggtgcgga 26342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 26623178 - 26623068
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    ||||| |||| ||||| ||| |||||  ||||||| || || | ||||||||||| ||||   ||| || |||||||||| |||||||||||||| | ||    
T  26623178 tgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaac 26623079  T
Q  320 aaaatgaagaa 330  Q
    |||||||||||    
T  26623078 aaaatgaagaa 26623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 26656319 - 26656070
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26656220  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| |||||||||| || | |||   || || ||||  |||  || |    
T  26656219 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagca 26656121  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
     |||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26656120 atgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26656070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 26729156 - 26729046
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    ||||| |||| ||||| ||| |||||  ||||||| || || | ||||||||||| ||||   ||| || |||||||||| |||||||||||||| | ||    
T  26729156 tgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaac 26729057  T
Q  320 aaaatgaagaa 330  Q
    |||||||||||    
T  26729056 aaaatgaagaa 26729046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 26762290 - 26762041
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 191  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26762191  T
Q  192 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 290  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| |||||||||| || | |||   || || ||||  |||  || |    
T  26762190 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagca 26762092  T
Q  291 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
     |||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26762091 atgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26762041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 26824043 - 26823921
Alignment:
Q  219 ctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctaga 318  Q
    ||||||||||| || |  ||| |||||| |||||||||| || | |||||| || | |||||||||| ||  | ||||||| ||||||||||| || | |    
T  26824043 ctgatgtcgtatgtcaccaggatccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaa 26823944  T
Q  319 caaaatgaagaagtagcatagtt 341  Q
    |||||||||||||  ||||||||    
T  26823943 caaaatgaagaagaggcatagtt 26823921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 26937440 - 26937370
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtt 158  Q
    |||||||| | |||||| ||||| || ||||||| ||||||| ||||||||||| |||||| |||||||||    
T  26937440 ttgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 28234854 - 28234808
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 177  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28234854 tcttccatttctgcaacctctccatgttatccttgttattttggaac 28234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 29826052 - 29826006
Alignment:
Q  397 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||    
T  29826052 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 29826006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 28781176 - 28781117
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  28781176 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 28781117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 28786315 - 28786256
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  28786315 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 28786256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 28792436 - 28792377
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  28792436 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 28792377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 25482072 - 25481986
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 178  Q
    |||||||||| || || || ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  25482072 aatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 25481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 27229257 - 27229211
Alignment:
Q  397 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||||||||| ||||| ||||| || |||||||||||||||||    
T  27229257 ggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggt 27229211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 443
Target Start/End: Original strand, 27610908 - 27611210
Alignment:
Q  141 ctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggt 240  Q
    |||||||| ||||||||| ||||| | |||||| ||||| | ||||  |||||  | |||| ||||||| |||    |||||||||| || | || ||||    
T  27610908 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggt 27611007  T
Q  241 tccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagt 340  Q
    |||||  |  ||||||| || | |||||| |||| ||||  |||| || ||||||| || ||||||||||| || | |||||| |||||||  |||||||    
T  27611008 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27611107  T
Q  341 tctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaa 440  Q
    |  | || || |||  ||    |||||| || || ||||||   |||||||| || ||||||||||| || |||||  |||| || ||||||||||||||    
T  27611108 tgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaa 27611207  T
Q  441 ggt 443  Q
    |||    
T  27611208 ggt 27611210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 27698644 - 27698702
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||    
T  27698644 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggt 27698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 27706420 - 27706498
Alignment:
Q  253 aaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 331  Q
    ||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  27706420 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 27706498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 27724995 - 27725053
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||    
T  27724995 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggt 27725053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 29826233 - 29826111
Alignment:
Q  216 agtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatct 315  Q
    |||||||||||| || |||||||| ||||||||||||||||  || | ||||||||||| |||   |||||   | | ||  ||||| ||||||||||||    
T  29826233 agtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatct 29826134  T
Q  316 agacaaaatgaagaagtagcata 338  Q
    |  ||||| ||||||| ||||||    
T  29826133 aagcaaaacgaagaagaagcata 29826111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 28150083 - 28150018
Alignment:
Q  276 cttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    |||| |||||||| ||||||| || ||||||||||| || | |||||||||||||| || ||||||    
T  28150083 ctttgccttgaagcagtgaataatgtggacaagttcgtccaaacaaaatgaagaagaagtatagtt 28150018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 25481891 - 25481823
Alignment:
Q  273 actcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 341  Q
    |||||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25481891 actctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25481823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 27664999 - 27665055
Alignment:
Q  117 ttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 173  Q
    ||||| |||||||  |||||||||| |||||||||||||||||| | ||| ||||||    
T  27664999 ttggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttg 27665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 28181405 - 28181353
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 183  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28181405 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 28227241 - 28227189
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 183  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28227241 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 88 - 446
Target Start/End: Original strand, 17993537 - 17993895
Alignment:
Q  88 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 187  Q
    |||||||| | |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||||| || |  ||||||     
T  17993537 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttcat 17993636  T
Q  188 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacg-actcttttccttga 286  Q
     || || ||||||| ||||||| |||| | |||||||||| || |||||||||||     |||||||||| ||||  ||  | || || |||||| |||     
T  17993637 gcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttctgtgccatagaaaacaggaattacc-gtcgtacccttttcattgg 17993735  T
Q  287 agtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgctttt 386  Q
    || | |||||||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||  ||||| || |||||||||||||| ||    
T  17993736 agcattgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagtcctttgagaagacgataatcgcaattcttgagtcttcaatgctctt 17993835  T
Q  387 gaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcg 446  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  17993836 gaggagcgacggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcg 17993895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 3279897 - 3279857
Alignment:
Q  216 agtctgatgtcgtacgtgagaaggttccacatcatagaaaa 256  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  3279897 agtctgatgtcgcacgtgggaaggttccacatcatagaaaa 3279857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 443
Target Start/End: Original strand, 5090899 - 5091162
Alignment:
Q  180 ttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttt 279  Q
    |||||||  ||||| ||||||| ||||||| ||   |||||||| ||| || ||||||||||||||| |||||||||  || | ||| || | ||  |||    
T  5090899 ttcttcatgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattt 5090998  T
Q  280 tccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaa 379  Q
    |||||| || ||||||| ||||||||||||||||||| |||||| ||||||| ||||||||  || ||||| || ||||   ||||| | || |||| ||    
T  5090999 tccttggagcagtgaataatatggacaagttcatctaaacaaaacgaagaagaagcatagtggttagagaaaacgataatgacaatcttagattcttgaa 5091098  T
Q  380 tgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    ||   ||||| || || ||||| |||| ||| |||| |||||||||  ||||||||||||||||    
T  5091099 tggccttgagaagtgacggtgttatttggtctcctcgctgaagctctctgtcatcaatgaaggt 5091162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 18655449 - 18655570
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||||| ||||| ||| |||||  |||||||||| |||| ||||||||||| ||||  |||| || ||||||||||  |||||||||| || | ||    
T  18655449 tgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttcgtccaaac 18655548  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  18655549 aaaatgaagaagaggcatagtt 18655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 18679539 - 18679660
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    ||||||| || ||||| ||| |||||  |||||||||| || | ||| ||||||| ||||  |||| || |||||||||| ||||||||||| || | ||    
T  18679539 tgatgtcatatgtgagtaggatccacgacatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 18679638  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  18679639 aaaatgaagaagaggcatagtt 18679660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 18699243 - 18699328
Alignment:
Q  91 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 176  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  18699243 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 18655361 - 18655405
Alignment:
Q  132 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 176  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18655361 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 18723969 - 18724013
Alignment:
Q  132 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 176  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18723969 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18724013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 18731388 - 18731432
Alignment:
Q  132 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 176  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18731388 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18731432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 18679410 - 18679495
Alignment:
Q  91 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 176  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||    
T  18679410 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaa 18679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 18699372 - 18699493
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||||| ||||| ||| || ||  |||||||||| || | |||||||||||  |||  |||| || |||||||||| || |||||||| || | ||    
T  18699372 tgatgtcgtatgtgagtaggatctacgccatagaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaac 18699471  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  18699472 aaaatgaagaagaggcatagtt 18699493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 18731476 - 18731597
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||||| ||||  ||| |||||  |||||||||| || | ||| ||||||| ||||  |||| || |||| ||||| ||||||||||| || | ||    
T  18731476 tgatgtcgtatgtgactaggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgtccaaac 18731575  T
Q  320 aaaatgaagaagtagcatagtt 341  Q
    ||||||||||||  ||||||||    
T  18731576 aaaatgaagaagaggcatagtt 18731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 34927 - 34809
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| ||||||||||| || |  |    
T  34927 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttcgtccaagc 34828  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||||||||||| ||||||    
T  34827 aaaatgaagaagaagcata 34809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 27650 - 27532
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| ||||||||||| || |  |    
T  27650 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttcgtccaagc 27551  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||||||||||| ||||||    
T  27550 aaaatgaagaagaagcata 27532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 338
Target Start/End: Complemental strand, 43257 - 43050
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 230  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  43257 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 43158  T
Q  231 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaa 330  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| ||||||||||| || |  ||||||||||||    
T  43157 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaa 43058  T
Q  331 gtagcata 338  Q
    | ||||||    
T  43057 gaagcata 43050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 116998 - 116880
Alignment:
Q  220 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 319  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||| |  |    
T  116998 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatccaagc 116899  T
Q  320 aaaatgaagaagtagcata 338  Q
    |||| ||||||| ||||||    
T  116898 aaaaggaagaagaagcata 116880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 35016 - 34970
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 177  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  35016 tcttccatttctgcaacctctccatgttatccttgttattttggaac 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 27739 - 27687
Alignment:
Q  131 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 183  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  27739 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 27687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 341
Target Start/End: Original strand, 58170 - 58388
Alignment:
Q  123 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctga 222  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| ||||||||||||| ||   |  ||| | |||||||  |||||| ||   |   |||    
T  58170 aagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcggcaagtgctttaccataacttccatcttga 58269  T
Q  223 tgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaa 322  Q
    ||||| ||||||||||||||||| |||||||||| ||| | ||| || || |  | ||||| |||| |||||||||| ||||||||||| |  |  ||||    
T  58270 tgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgtggacaagttcgttcaagcaaa 58369  T
Q  323 atgaagaagtagcatagtt 341  Q
    ||||||||| |||||||||    
T  58370 atgaagaagaagcatagtt 58388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 58444 - 58497
Alignment:
Q  397 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggatt 450  Q
    ||||| |||||||||||||  ||||||||  ||||||| |||||||||||||||    
T  58444 ggtgttatttcgtcacctccttgaagctctctgtcatccatgaaggttcggatt 58497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 341
Target Start/End: Original strand, 268241 - 268450
Alignment:
Q  132 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 231  Q
    ||||||||  |||||||||||||||||||||||| |||||||||| || |||||   || ||  ||   | ||||||| ||   | | |||||||||| |    
T  268241 cttccattgatgcaaccgctccatgtttttcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatg 268340  T
Q  232 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 331  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||| |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 268440  T
Q  332 tagcatagtt 341  Q
      ||||||||    
T  268441 aggcatagtt 268450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 28127523 - 28127610
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 179  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28127610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 28164207 - 28164294
Alignment:
Q  92 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 179  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 341
Target Start/End: Original strand, 29273667 - 29273876
Alignment:
Q  132 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 231  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| || |||||  ||| ||  ||   | ||||||| ||   | | |||||||||| |    
T  29273667 cttccattgatgcaaccgatccatgtttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatg 29273766  T
Q  232 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 331  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 29273866  T
Q  332 tagcatagtt 341  Q
      ||||||||    
T  29273867 aggcatagtt 29273876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 31903970 - 31903893
Alignment:
Q  303 gacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaat 380  Q
    ||||||||||| ||  ||||||||||||| ||||||||| || ||||  |||||||  |||||||| || ||||||||    
T  31903970 gacaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaat 31903893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 441
Target Start/End: Complemental strand, 16689073 - 16688992
Alignment:
Q  360 tgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaag 441  Q
    ||||||||| |||||||||||    ||||  || || |||||||||| ||||||||||||||| ||||||||||||||||||    
T  16689073 tgcaatccttgagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaag 16688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 443
Target Start/End: Original strand, 3423 - 3630
Alignment:
Q  237 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagca 336  Q
    |||||||||| || | ||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  |||    
T  3423 aggttccacaccaaataaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggca 3522  T
Q  337 ta-gttctttgagaatacaataactgcaatcctggagtcttcaatgcttttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatca 435  Q
    || |||  | || || |||  ||    |||||| || || ||||||   |||||||| || ||||||||||| || ||||| ||||| || |||||||||    
T  3523 taggttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatca 3622  T
Q  436 atgaaggt 443  Q
    ||||||||    
T  3623 atgaaggt 3630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 14505 - 14563
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 443  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||    
T  14505 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggt 14563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 67 - 126
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  67 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 126  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 7562 - 7503
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  7562 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 7503  T

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Target: scaffold0277 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 13782 - 13841
Alignment:
Q  385 ttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 444  Q
    |||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||||    
T  13782 ttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtt 13841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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