View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729_low_2 (Length: 324)
Name: NF4729_low_2
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42063127 - 42063439
Alignment:
| Q |
1 |
ttcaacgccccttcaggtgaaaccaatgcagcaggaagcttttcagatgtttcagatccgcgtagtgcagagtgaactgcatccgctttaccggtaccag |
100 |
Q |
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| T |
42063127 |
ttcaactccccttcaggtgaaaccaatgcagcaggaagcttttcagatgtttcagatccgcgtagtgcagagtgaactgcatccgctttgccggtaccag |
42063226 |
T |
|
| Q |
101 |
tcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgaccca |
200 |
Q |
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| T |
42063227 |
tcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtaaccca |
42063326 |
T |
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| Q |
201 |
ttttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatcca |
300 |
Q |
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| T |
42063327 |
ttttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatcca |
42063426 |
T |
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| Q |
301 |
ctggctgatgatg |
313 |
Q |
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| T |
42063427 |
ctggctgatgatg |
42063439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 310
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
129 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
228 |
Q |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
229 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
310 |
Q |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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