View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4729_low_3 (Length: 254)
Name: NF4729_low_3
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4729_low_3 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2632392 - 2632634
Alignment:
| Q |
1 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632392 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
2632491 |
T |
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| Q |
101 |
tgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaa |
200 |
Q |
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| T |
2632492 |
tgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaatctgacaacaaattttagaaaatgaaaacaaaa |
2632591 |
T |
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| Q |
201 |
tatgtttttaaaaattaaacagacacttacacttcctttgctt |
243 |
Q |
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| T |
2632592 |
tatgtttttaaaaattaaacagacacttacacttcctttgctt |
2632634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7619 - 7377
Alignment:
| Q |
1 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7619 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
7520 |
T |
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| Q |
101 |
tgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaa |
200 |
Q |
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| T |
7519 |
tttctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaatctgacaacaaattttagaaaatgaaaacaaaa |
7420 |
T |
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| Q |
201 |
tatgtttttaaaaattaaacagacacttacacttcctttgctt |
243 |
Q |
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| T |
7419 |
tatgtttttaaaaattaaacagacacttacacttcctttgctt |
7377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 45238093 - 45237856
Alignment:
| Q |
1 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45238093 |
actaagtgagggactgacgtgacatttcataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaa-----ctggatatttactaccc |
45237999 |
T |
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| Q |
101 |
tgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaa |
200 |
Q |
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| T |
45237998 |
tatctataaccagcttgattattcattacaattacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaa |
45237899 |
T |
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| Q |
201 |
tatgtttttaaaaattaaacagacacttacacttcctttgctt |
243 |
Q |
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| T |
45237898 |
tatgtttttaaaaagtaaacagacacttacacttcctttgctt |
45237856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 7830965 - 7830853
Alignment:
| Q |
131 |
attacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttac |
230 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7830965 |
attactggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaagtaaacagacacttac |
7830866 |
T |
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| Q |
231 |
acttcctttgctt |
243 |
Q |
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| T |
7830865 |
acttcctttgctt |
7830853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7831110 - 7831000
Alignment:
| Q |
1 |
actaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccctataaaaataagggagcaaagcaaactggatatttactaccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||| |
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| T |
7831110 |
actaagtgagggactgacgtgacattttataaaagtaggggaccaaattgatacaccctataaaaatgagg-----cagcaaattggatatttagtaccc |
7831016 |
T |
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| Q |
101 |
tgtctataaccagcct |
116 |
Q |
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| T |
7831015 |
tatctataactagcct |
7831000 |
T |
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