View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4729_low_5 (Length: 219)

Name: NF4729_low_5
Description: NF4729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4729_low_5
NF4729_low_5
[»] chr1 (14 HSPs)
chr1 (10-201)||(41398308-41398498)
chr1 (10-201)||(41390653-41390843)
chr1 (29-201)||(25444931-25445102)
chr1 (29-200)||(1054854-1055024)
chr1 (29-200)||(39445572-39445742)
chr1 (29-200)||(44023716-44023886)
chr1 (29-168)||(25439738-25439875)
chr1 (13-93)||(24787148-24787226)
chr1 (94-201)||(24787280-24787389)
chr1 (31-94)||(24202573-24202635)
chr1 (42-198)||(43988314-43988474)
chr1 (94-201)||(24202686-24202793)
chr1 (31-94)||(19366112-19366174)
chr1 (31-94)||(19361237-19361298)
[»] chr5 (24 HSPs)
chr5 (10-201)||(15044758-15044948)
chr5 (10-201)||(1456985-1457175)
chr5 (10-201)||(27445042-27445232)
chr5 (10-201)||(27449886-27450076)
chr5 (10-201)||(43592351-43592541)
chr5 (10-201)||(43598796-43598986)
chr5 (10-201)||(43604288-43604478)
chr5 (10-201)||(43609780-43609970)
chr5 (42-200)||(28807429-28807585)
chr5 (72-201)||(37556506-37556635)
chr5 (72-201)||(37561328-37561457)
chr5 (42-198)||(33791391-33791549)
chr5 (95-201)||(30631478-30631586)
chr5 (42-198)||(2785450-2785608)
chr5 (13-94)||(30631640-30631719)
chr5 (13-94)||(31180447-31180526)
chr5 (94-201)||(31180286-31180394)
chr5 (13-94)||(24136080-24136159)
chr5 (42-198)||(31396843-31397003)
chr5 (42-198)||(31401700-31401860)
chr5 (31-94)||(35387893-35387955)
chr5 (94-201)||(24135921-24136028)
chr5 (31-94)||(38219629-38219691)
chr5 (42-198)||(33768254-33768417)
[»] chr2 (14 HSPs)
chr2 (10-201)||(39811811-39812001)
chr2 (29-201)||(32246860-32247031)
chr2 (42-198)||(19344496-19344655)
chr2 (42-198)||(19349354-19349513)
chr2 (13-94)||(11098711-11098790)
chr2 (128-201)||(44312563-44312637)
chr2 (13-94)||(9296186-9296265)
chr2 (13-94)||(14291722-14291801)
chr2 (94-201)||(11098843-11098951)
chr2 (31-94)||(25409860-25409922)
chr2 (94-201)||(14291561-14291669)
chr2 (94-201)||(9296317-9296425)
chr2 (94-201)||(3491823-3491930)
chr2 (31-94)||(3491981-3492043)
[»] chr7 (21 HSPs)
chr7 (10-201)||(31109406-31109596)
chr7 (10-201)||(24024150-24024339)
chr7 (10-201)||(12396983-12397173)
chr7 (18-201)||(12406403-12406585)
chr7 (42-201)||(19992385-19992544)
chr7 (42-200)||(21812092-21812251)
chr7 (13-94)||(20357331-20357410)
chr7 (13-92)||(4873310-4873387)
chr7 (13-94)||(1533228-1533307)
chr7 (13-94)||(2058202-2058281)
chr7 (42-198)||(24266054-24266212)
chr7 (94-145)||(1533359-1533410)
chr7 (42-198)||(24261175-24261333)
chr7 (94-201)||(20357463-20357572)
chr7 (31-94)||(21640039-21640101)
chr7 (31-94)||(21646237-21646299)
chr7 (31-94)||(18408993-18409055)
chr7 (94-201)||(21639881-21639988)
chr7 (94-201)||(2058038-2058147)
chr7 (31-94)||(18413869-18413931)
chr7 (94-145)||(21646135-21646186)
[»] chr6 (14 HSPs)
chr6 (13-201)||(14737403-14737589)
chr6 (13-201)||(14742263-14742449)
chr6 (10-201)||(11857046-11857236)
chr6 (10-201)||(22010520-22010710)
chr6 (26-201)||(28184577-28184754)
chr6 (29-201)||(28155412-28155582)
chr6 (29-200)||(6438573-6438743)
chr6 (42-198)||(16838819-16838977)
chr6 (42-198)||(6005492-6005650)
chr6 (42-198)||(33330297-33330455)
chr6 (42-198)||(33335794-33335952)
chr6 (13-94)||(5674554-5674633)
chr6 (94-145)||(5674685-5674736)
chr6 (42-123)||(5343628-5343710)
[»] scaffold0355 (2 HSPs)
scaffold0355 (10-186)||(3671-3845)
scaffold0355 (66-201)||(9521-9655)
[»] scaffold0135 (1 HSPs)
scaffold0135 (10-201)||(34885-35075)
[»] chr8 (29 HSPs)
chr8 (10-201)||(7289749-7289939)
chr8 (29-201)||(25328120-25328291)
chr8 (29-200)||(39784665-39784835)
chr8 (42-198)||(35745466-35745624)
chr8 (10-94)||(6311532-6311614)
chr8 (94-201)||(6311369-6311477)
chr8 (13-94)||(18870345-18870424)
chr8 (13-94)||(30655880-30655959)
chr8 (13-94)||(10688924-10689003)
chr8 (13-94)||(18852951-18853030)
chr8 (29-106)||(25327994-25328070)
chr8 (13-94)||(33037592-33037671)
chr8 (12-94)||(4759857-4759938)
chr8 (94-201)||(30655719-30655827)
chr8 (94-201)||(36979450-36979558)
chr8 (42-198)||(10684116-10684274)
chr8 (94-201)||(18870477-18870586)
chr8 (31-94)||(1261758-1261820)
chr8 (94-201)||(18853083-18853192)
chr8 (13-94)||(36979611-36979689)
chr8 (95-201)||(33037724-33037831)
chr8 (94-201)||(4759991-4760099)
chr8 (33-94)||(31071035-31071095)
chr8 (94-145)||(1261871-1261922)
chr8 (94-201)||(10689058-10689167)
chr8 (31-94)||(26288121-26288183)
chr8 (31-94)||(26301378-26301440)
chr8 (31-94)||(26313372-26313434)
chr8 (31-94)||(7412569-7412629)
[»] chr4 (14 HSPs)
chr4 (10-201)||(9224230-9224420)
chr4 (10-201)||(9229017-9229207)
chr4 (14-201)||(51520529-51520715)
chr4 (29-201)||(45347658-45347830)
chr4 (29-201)||(3814096-3814266)
chr4 (29-201)||(45357138-45357309)
chr4 (29-201)||(5732737-5732907)
chr4 (66-200)||(18855799-18855933)
chr4 (10-100)||(18712589-18712677)
chr4 (13-94)||(24742174-24742253)
chr4 (13-94)||(29760874-29760954)
chr4 (94-201)||(24742013-24742121)
chr4 (96-201)||(29760714-29760821)
chr4 (142-201)||(56146664-56146724)
[»] chr3 (23 HSPs)
chr3 (10-201)||(22173018-22173208)
chr3 (29-201)||(18656507-18656677)
chr3 (42-198)||(2676939-2677097)
chr3 (42-198)||(24968182-24968340)
chr3 (94-201)||(28501613-28501722)
chr3 (94-201)||(28503780-28503889)
chr3 (42-198)||(2672783-2672941)
chr3 (13-94)||(7167478-7167558)
chr3 (13-94)||(28501480-28501560)
chr3 (13-94)||(28503647-28503727)
chr3 (13-94)||(2671370-2671449)
chr3 (13-94)||(40372580-40372659)
chr3 (94-201)||(7167317-7167425)
chr3 (16-94)||(8477598-8477674)
chr3 (12-94)||(8738846-8738926)
chr3 (13-94)||(9091085-9091164)
chr3 (42-198)||(8512292-8512450)
chr3 (42-198)||(8517172-8517330)
chr3 (97-201)||(8738982-8739087)
chr3 (97-201)||(9091220-9091325)
chr3 (94-201)||(8477435-8477545)
chr3 (33-94)||(1306179-1306239)
chr3 (94-145)||(26928507-26928558)
[»] scaffold0464 (1 HSPs)
scaffold0464 (29-200)||(435-605)
[»] scaffold0259 (1 HSPs)
scaffold0259 (42-198)||(2103-2261)
[»] scaffold0028 (1 HSPs)
scaffold0028 (42-198)||(148808-148966)
[»] scaffold0197 (2 HSPs)
scaffold0197 (42-198)||(14161-14319)
scaffold0197 (42-198)||(19017-19175)
[»] scaffold0009 (1 HSPs)
scaffold0009 (42-137)||(176829-176925)
[»] scaffold0188 (2 HSPs)
scaffold0188 (31-94)||(17756-17818)
scaffold0188 (31-94)||(23849-23911)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 41398498 - 41398308
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41398498 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatagt 41398400  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41398399 gtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 41398308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 41390843 - 41390653
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41390843 tagcaaaggagggaaccaaatggattgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatagt 41390745  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41390744 gtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 41390653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 25444931 - 25445102
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25444931 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggatttagggttcatagtgtgagagtgggaaaatacc 25445029  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||  |||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  25445030 aaagggtag-ctctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacacttt 25445102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 1054854 - 1055024
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1054854 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 1054952  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  1054953 aaagggtag-ttctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt 1055024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 39445742 - 39445572
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  39445742 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 39445644  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  39445643 aaagggtag-ttctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt 39445572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 44023716 - 44023886
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  44023716 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 44023814  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  44023815 aaagggtag-ttctagggtttgttcatgtgtaaagcttgacaagctagagtcttgtaaccttttgtaacactt 44023886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 25439738 - 25439875
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25439738 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggatttagggttcatagtgtgagagtgggaaaatacc 25439836  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga 168  Q
    |||||||||  |||||| |||||| |||||||||||||||    
T  25439837 aaagggtag-ctctagggtttgttcatgtgtaaagcttga 25439875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 24787148 - 24787226
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttggg 93  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  24787148 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattataatcaccttggg 24787226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 24787280 - 24787389
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| ||||||||| || ||| |||||||||||||||||||| ||||||  ||||||| ||||||||||||  |  |||||||||| |||    
T  24787280 ttttagggttcatattgtgagagttgggaaacaccaaagggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaacccttt 24787379  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  24787380 gtaacacttt 24787389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 24202573 - 24202635
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24202573 gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 24202635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 43988314 - 43988474
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||||||||| ||    
T  43988314 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggatgggaaaatgccaaagggtag-at 43988412  T
Q  141 ctaggctttgt--ttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| ||| |  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  43988413 ctagggttttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 43988474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 24202686 - 24202793
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta-gagtcttgtaaccttttg 192  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||  |||||  ||||| ||||||| | ||||    |||||||||| ||||    
T  24202686 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgt-aagcttgcaagctatttttcttgtaaccctttg 24202784  T
Q  193 taacacttt 201  Q
    |||||||||    
T  24202785 taacacttt 24202793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 19366112 - 19366174
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  ||||||||| |||||||||| ||||||| ||||||||||    
T  19366112 gggttgagtgtctttgtagtgaggatctcttggg-ttgggaaaaatattgtaaacaccttgggt 19366174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 19361237 - 19361298
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  |||||||||||  || |||||||||||| ||||||||||    
T  19361237 gggttgagtgtctttgtagtgaggatctcttgggtt--gggaaaacattgtaaacaccttgggt 19361298  T

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Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 15044948 - 15044758
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15044948 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 15044850  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15044849 gtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacacttt 15044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 1456985 - 1457175
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  1456985 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 1457082  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1457083 gtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 1457175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 27445232 - 27445042
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  27445232 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 27445135  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27445134 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 27445042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 27450076 - 27449886
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  27450076 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 27449979  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27449978 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 27449886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 43592541 - 43592351
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  43592541 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 43592444  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43592443 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 43592351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 43598986 - 43598796
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  43598986 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 43598889  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43598888 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 43598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 43604478 - 43604288
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  43604478 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 43604381  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43604380 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 43604288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 43609970 - 43609780
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  43609970 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 43609873  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43609872 aagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 43609780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 28807429 - 28807585
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatc 141  Q
    ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||    
T  28807429 ctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaataccaaagggtag-atc 28807526  T
Q  142 taggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactt 200  Q
    |||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  28807527 tagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactt 28807585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 37556506 - 37556635
Alignment:
Q  72 aaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttga-ag 170  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||||||| |     
T  37556506 aaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaaagcttgataa 37556604  T
Q  171 gctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||  |||||||||||||||||||||||    
T  37556605 gctagatacttgtaaccttttgtaacacttt 37556635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 37561328 - 37561457
Alignment:
Q  72 aaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttga-ag 170  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||||||| |     
T  37561328 aaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaaagcttgataa 37561426  T
Q  171 gctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||  |||||||||||||||||||||||    
T  37561427 gctagatacttgtaaccttttgtaacacttt 37561457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 33791549 - 33791391
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||  |    
T  33791549 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gt 33791451  T
Q  141 ctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  33791450 ctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 33791391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 30631586 - 30631478
Alignment:
Q  95 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag--tcttgtaaccttttg 192  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||  |||||||||| ||||    
T  30631586 tttagggttcatattgtgagagtggggaaacaccaaagggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttg 30631487  T
Q  193 taacacttt 201  Q
    |||||||||    
T  30631486 taacacttt 30631478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 2785608 - 2785450
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||  |    
T  2785608 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gt 2785510  T
Q  141 ctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||||| ||| |||||||||| || |||||| ||||||||| ||||||||||||    
T  2785509 ctagggtttgttcatgagtaaagcttgaaaagctagattcttgtaactcttttgtaacac 2785450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 30631719 - 30631640
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30631719 caaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 30631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 31180526 - 31180447
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31180526 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 31180447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 31180394 - 31180286
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag--tcttgtaacctttt 191  Q
    ||||| |||||||| |||||||||||| ||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||  |||||||||| |||    
T  31180394 ttttatggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgtct-tgtgtaaagcttgaaggctagagtttcttgtaacccttt 31180296  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  31180295 gtaacacttt 31180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24136159 - 24136080
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||    
T  24136159 caaaggagggaaccaaa-gggttgagtgtctttgtagaaagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggt 24136080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 31396843 - 31397003
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||||||||| ||    
T  31396843 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggatgggaaaatgccaaagggtag-at 31396941  T
Q  141 ctaggctttgt--ttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| ||| |  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  31396942 ctagggttttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 31397003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 31401700 - 31401860
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||||||||| ||    
T  31401700 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggatgggaaaatgccaaagggtag-at 31401798  T
Q  141 ctaggctttgt--ttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||  ||| |  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  31401799 ctagagttttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 31401860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 35387955 - 35387893
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||    
T  35387955 gggttgagtgtctttgtagagagggtctcttggg-ttggaaaaaacattgtaatcaccttgggt 35387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 24136028 - 24135921
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta-gagtcttgtaaccttttg 192  Q
    |||||||||||| | |||||||||||| ||| ||||||||||||||||||||  |||||  ||||| ||||||| | ||||    |||||||||| ||||    
T  24136028 ttttagggttcacattgtgagagtggggaaacaccaaagggtagaatctaggacttgttcttgtgt-aagcttgcaagctatttttcttgtaaccctttg 24135930  T
Q  193 taacacttt 201  Q
    |||||||||    
T  24135929 taacacttt 24135921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 38219691 - 38219629
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||||||||||| ||||||||||    
T  38219691 gggttgagtgtctttgtagtgaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 38219629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 33768417 - 33768254
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtga--gagt-gggaaaatacc--aaagggt 135  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||   |||||||||||||   | || ||||||||| |  |||||||    
T  33768417 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattattggttcatagtgtggaggggtagggaaaataaccgaaagggt 33768318  T
Q  136 agaatctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    ||  |||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  33768317 agg-tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 33768254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 39811811 - 39812001
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  39811811 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttaggtt-gagaaaaacattgtaatcaccttgggttttagggttcatagt 39811909  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39811910 gtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 39812001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 32247031 - 32246860
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32247031 atggggtgtgtgcctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggatttagggttcatagtgtgagagtgggaaaatacc 32246933  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  32246932 aaagggtataatctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacacttt 32246860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 19344655 - 19344496
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaaa--acattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaa 139  Q
    ||||| ||||||||| |||| |||| || ||||  ||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||      
T  19344655 ctttgatgagagtgtttcttaggttgggaaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-g 19344557  T
Q  140 tctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    |||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  19344556 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 19344496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 19349513 - 19349354
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaaa--acattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaa 139  Q
    ||||| ||||||||| |||| |||| || ||||  ||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||      
T  19349513 ctttgatgagagtgtttcttaggttgggaaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-g 19349415  T
Q  140 tctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    |||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  19349414 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 19349354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 11098711 - 11098790
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  11098711 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 11098790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 44312563 - 44312637
Alignment:
Q  128 caaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 44312637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 9296186 - 9296265
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||    
T  9296186 caaaggagggaaccaaa-gggttgagtgtctttgtagaaagtgtctattgggtt-gggaaaaacattgtaatcaccttgggt 9296265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 14291801 - 14291722
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||    
T  14291801 caaaggagggaaccaaa-gggttgagcgtctttgtagatagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggt 14291722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 11098843 - 11098951
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||  ||||| ||||||| | ||||  |  |||||||||| |||    
T  11098843 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgt-aagcttgcaagctattgtttcttgtaacccttt 11098941  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  11098942 gtaacacttt 11098951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 25409922 - 25409860
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||| ||||||||||    
T  25409922 gggttgagtgtctttgtagagaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 25409860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 14291669 - 14291561
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||  |||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  14291669 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 14291571  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  14291570 gtaacacttt 14291561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 9296317 - 9296425
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||  |||||  ||| | ||||||||||||||  |  |||||||||| |||    
T  9296317 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtat-aagcttgaaggctattgtttcttgtaacccttt 9296415  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  9296416 gtaacacttt 9296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 3491930 - 3491823
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta-gagtcttgtaaccttttg 192  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||  |||||  ||||| ||||||| | ||||    |||||||||| ||||    
T  3491930 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgt-aagcttgcaagctatttttcttgtaaccctttg 3491832  T
Q  193 taacacttt 201  Q
    |||||||||    
T  3491831 taacacttt 3491823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 3492043 - 3491981
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  ||||||||||| || ||||||||||||| ||||||||||    
T  3492043 gggttgagtgtctttgtagtgaggatctcttgggtt-ggaaaaaacattgtaaacaccttgggt 3491981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 31109406 - 31109596
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31109406 tagcaaaggagggaaccatatgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatagt 31109504  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31109505 gtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtgcaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 31109596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 24024150 - 24024339
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||    
T  24024150 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtttgg-aaaaacattgtaatcaccgtgggttttagggttcatcgt 24024247  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24024248 gtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaacattttgtaacacttt 24024339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 12397173 - 12396983
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12397173 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 12397076  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    |||| |||||| ||| |||||||||||||||||||| |||||| |||||||||| || |||||||||| ||||||||||||||||||||||||    
T  12397075 gtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagattaaaggctagagttcttgtaaccttttgtaacacttt 12396983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 12406585 - 12406403
Alignment:
Q  18 gagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  12406585 gagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttggcttttagggttcatattgtgagagt 12406488  T
Q  118 gggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12406487 ggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 12406403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 19992544 - 19992385
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatc 141  Q
    ||||| || |||||| |||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||    
T  19992544 ctttgatgtgagtgtttcttaggttggggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaataccaaagggtag-ttc 19992446  T
Q  142 taggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  19992445 tagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacacttt 19992385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 21812092 - 21812251
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatc 141  Q
    ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||    
T  21812092 ctttgatgagagtgtttcttaggttggggaaaaacattgtaatcaccttgggattatgggttcatagtgtgagagtgggaaaataccaaagggtag-atc 21812190  T
Q  142 taggctttgtttatgtgtaaagc-ttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||| |||||| ||||||||||| |||| | |||||||||||| |||||||||||| ||||    
T  21812191 tagggtttgttcatgtgtaaagctttgacaagctagagtcttggaaccttttgtaagactt 21812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 20357331 - 20357410
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20357331 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 20357410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 4873387 - 4873310
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgg 92  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4873387 caaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgg 4873310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 1533228 - 1533307
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1533228 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 1533307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 2058281 - 2058202
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2058281 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 2058202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 24266054 - 24266212
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  24266054 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 24266152  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  24266153 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 24266212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 1533359 - 1533410
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagg 145  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  1533359 ttttagggttcatattgtgagagtgggaaaacaccaaagggtagaatctagg 1533410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 24261175 - 24261333
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||  |||| |||| || ||| ||||||||||||| |||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  24261175 ctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcatcttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 24261273  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  24261274 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 24261333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 20357463 - 20357572
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||   ||||  ||||||||||||||||||||  |  |||||||||| |||    
T  20357463 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaacccttt 20357562  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  20357563 gtaacacttt 20357572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 21640101 - 21640039
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||| ||||||||||    
T  21640101 gggttgagtgtctttgtagagaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 21640039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 21646299 - 21646237
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||| ||||||||||    
T  21646299 gggttgagtgtctttgtagagaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 21646237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 18409055 - 18408993
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||||||||||| ||||||||||    
T  18409055 gggttgagtgtctttgtagtgaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 18408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 21639988 - 21639881
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta-gagtcttgtaaccttttg 192  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||  |||||  ||||| ||||||| | ||||    |||||||||| ||||    
T  21639988 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtgt-aagcttgcaagctatttttcttgtaaccctttg 21639890  T
Q  193 taacacttt 201  Q
    |||||||||    
T  21639889 taacacttt 21639881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 2058147 - 2058038
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaatacca-aagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaaccttt 190  Q
    |||||||||||||| |||||||||||| ||| | || | ||||||||||||||  |||||  ||||| ||||||||| ||||  |  |||||||||| ||    
T  2058147 ttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgt-aagcttgaatgctattgtttcttgtaaccctt 2058049  T
Q  191 tgtaacacttt 201  Q
    |||||||||||    
T  2058048 tgtaacacttt 2058038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 18413931 - 18413869
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||||| ||||| ||||||||||    
T  18413931 gggttgagtgtctttgtagtgaggatctcttgggtt-gggaaaaacaatgtaaacaccttgggt 18413869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 21646186 - 21646135
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagg 145  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||    
T  21646186 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctagg 21646135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 14737403 - 14737589
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtg 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737403 caaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatagtgtg 14737500  T
Q  113 agagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  14737501 agagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 14737589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 14742263 - 14742449
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtg 112  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14742263 caaaggagggaaccaa-tgggttaagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcactttgggttttagggttcatagtgtg 14742360  T
Q  113 agagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  14742361 agagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 14742449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 11857236 - 11857046
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  11857236 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 11857139  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11857138 gtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 11857046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 22010520 - 22010710
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  22010520 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 22010617  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22010618 gtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 22010710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 28184754 - 28184577
Alignment:
Q  26 caaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaa--cattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaa 123  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28184754 caaatgggttgagggtctttgttgagagtgtctcttgggtttgggaaaaaaacatagtaatcaccttgggttttagggttcatagtgtgagagtgggaaa 28184655  T
Q  124 ataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28184654 ataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtgttgtaaccttttgtaacacttt 28184577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 28155412 - 28155582
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28155412 atggggtgtgtgcctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggatttagggttcatagtgtgagagtgggaaaatacc 28155510  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||| ||||||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||||||    
T  28155511 aaagggtag-atctagggtttgttcatgtgtaaagcttgaaagctaaattcttgtaaccttttgtaacacttt 28155582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 6438743 - 6438573
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  6438743 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 6438645  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  6438644 aaagggtag-ttctagggtttgttcatgtgtaaagcttgacaagctagagtcttgtaaccttttgtaacactt 6438573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 16838977 - 16838819
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||    
T  16838977 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-at 16838879  T
Q  141 ctaggctttgtttatgtgtaaagcttgaa-ggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||||| ||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  16838878 ctagggtttgttcatgtgtaaagcttgaatagctagattcttgtaactcttttgtaacac 16838819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 6005650 - 6005492
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||  |    
T  6005650 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gt 6005552  T
Q  141 ctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  6005551 ctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 6005492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 33330297 - 33330455
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||    
T  33330297 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-at 33330395  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  | ||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  33330396 ctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 33330455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 33335794 - 33335952
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||    
T  33335794 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-at 33335892  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  | ||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  33335893 ctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 33335952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 5674554 - 5674633
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  5674554 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 5674633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 5674685 - 5674736
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagg 145  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  5674685 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagg 5674736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 5343710 - 5343628
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaa 123  Q
    ||||| ||||||||  |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  |||||||    
T  5343710 ctttgatgagagtgaatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaa 5343628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 3671 - 3845
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  3671 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttaggttagg-aaaaacattgtaatcaccttgggttttagggttcatagt 3769  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaac 186  Q
    |||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  3770 gtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaac 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 9521 - 9655
Alignment:
Q  66 ttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagct 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  9521 ttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagct 9619  T
Q  166 tgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  9620 tgaaggctagagtcttgtaaccttttgtaacacttt 9655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 34885 - 35075
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34885 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaa-cattgtaatcaccttgggttttagggttcatagt 34982  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  34983 gtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacacttt 35075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 7289749 - 7289939
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  7289749 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 7289846  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7289847 gtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 7289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 25328120 - 25328291
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||    
T  25328120 atgggttgtgtgtctttgatgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatgttgtgagagtggggaaacacc 25328218  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25328219 aaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 25328291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 39784665 - 39784835
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| ||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  39784665 atggggtgtgtgcctttgatgagagagtctcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 39784763  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  39784764 aaagggtag-ttctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt 39784835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 35745624 - 35745466
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||  |    
T  35745624 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgagggtgggaaaataccaaagggtag-gt 35745526  T
Q  141 ctaggctttgtttatgtgtaaagcttg-aaggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||||| |||||||||||||| || |||||| ||||||||| ||||||||||||    
T  35745525 ctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacac 35745466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 6311614 - 6311532
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6311614 tagcaaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 6311532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 6311477 - 6311369
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag--tcttgtaacctttt 191  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||    
T  6311477 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtttgtct-tgtgtaaagcttgaaggctagagtttcttgtaacctttt 6311379  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  6311378 gtaacacttt 6311369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 18870345 - 18870424
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18870345 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 18870424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 30655959 - 30655880
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30655959 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 30655880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 10688924 - 10689003
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  10688924 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 10689003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 18852951 - 18853030
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  18852951 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaatattgtaatcaccttgggt 18853030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 25327994 - 25328070
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcat 106  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25327994 atgggttgtgtgtctttgatgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcat 25328070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 33037592 - 33037671
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  33037592 caaaggagggaaccaaa-gggttgagtgtcttcgtagagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggt 33037671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 4759857 - 4759938
Alignment:
Q  12 gcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    |||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||||||||||    
T  4759857 gcaaaggaggtaaccaaa-gggttgagtgtctttgtagagagagtctcttgggttgggaaaaaacattgtaatcaccttgggt 4759938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 30655827 - 30655719
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  30655827 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 30655729  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  30655728 gtaacacttt 30655719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 36979558 - 36979450
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  36979558 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 36979460  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  36979459 gtaacacttt 36979450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 10684116 - 10684274
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  10684116 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 10684214  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  10684215 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 10684274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 18870477 - 18870586
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaa-ccttt 190  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||||||| ||||  |  |||||||| |||||    
T  18870477 ttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgt-aagcttgaatgctattgtttcttgtaacccttt 18870575  T
Q  191 tgtaacacttt 201  Q
    |||||||||||    
T  18870576 tgtaacacttt 18870586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 1261758 - 1261820
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  1261758 gggttgagtgtctttgtagagagggtctcttgggtt-gggaaaaacattgtaatcaccttgggt 1261820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 18853083 - 18853192
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaa-ccttt 190  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||  ||||| ||||||||| ||||  |  |||||||| |||||    
T  18853083 ttttagggttcatattgtgagagtggggaaataccaaagggtaaaatctagggtttgttcttgtgt-aagcttgaatgctattgtttcttgtaacccttt 18853181  T
Q  191 tgtaacacttt 201  Q
    |||||||||||    
T  18853182 tgtaacacttt 18853192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 36979689 - 36979611
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||  || |||||||||||||||||||||||    
T  36979689 caaagaagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttaggtt--gggaaaacattgtaatcaccttgggt 36979611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 33037724 - 33037831
Alignment:
Q  95 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaaccttttg 192  Q
    ||||||||||||| |||||||||||| ||| ||  | |||||||||||||| ||||||  ||||| ||||||||||||||  |  |||||||||| ||||    
T  33037724 tttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttg 33037822  T
Q  193 taacacttt 201  Q
    |||||||||    
T  33037823 taacacttt 33037831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 4759991 - 4760099
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||||||||||||  |||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  4759991 ttttagggttcatattgtgagagtggggaaacacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 4760089  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  4760090 gtaacacttt 4760099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 31071035 - 31071095
Alignment:
Q  33 gttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||| | |||  ||||||||||| |||||||||||||||| ||||||||||    
T  31071035 gttgagtgtctttgtagtgaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 31071095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 1261871 - 1261922
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagg 145  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||    
T  1261871 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctagg 1261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 10689058 - 10689167
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaatacca-aagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaaccttt 190  Q
    |||||||||||||| |||||||||||| ||| | || | ||||||||||||||  |||||  ||||| ||||||||||||||  |  |||||||||| |     
T  10689058 ttttagggttcatattgtgagagtggggaaacaacatatgggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctc 10689156  T
Q  191 tgtaacacttt 201  Q
    |||||||||||    
T  10689157 tgtaacacttt 10689167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 26288183 - 26288121
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||| ||||||||| |||||  ||||||| ||| |||||||||||||||| ||||||||||    
T  26288183 gggttgaatgtctttgtagagagaatctcttgagtt-gggaaaaacattgtaaacaccttgggt 26288121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 26301440 - 26301378
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||| ||||||||| |||||  ||||||| ||| |||||||||||||||| ||||||||||    
T  26301440 gggttgaatgtctttgtagagagaatctcttgagtt-gggaaaaacattgtaaacaccttgggt 26301378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 26313434 - 26313372
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||| ||||||||| |||||  ||||||| ||| |||||||||||||||| ||||||||||    
T  26313434 gggttgaatgtctttgtagagagaatctcttgagtt-gggaaaaacattgtaaacaccttgggt 26313372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 7412629 - 7412569
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| ||   ||||||||||| ||||||||||    
T  7412629 gggttgagtgtctttgtagagaggatctcttgggttggg---aaacattgtaaacaccttgggt 7412569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 9224230 - 9224420
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9224230 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaa-cattgtaatcaccttgggttttagggttcatagt 9224327  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  9224328 gtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacacttt 9224420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 9229017 - 9229207
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9229017 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaa-cattgtaatcaccttgggttttagggttcatagt 9229114  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||||||| ||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  9229115 gtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacacttt 9229207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 51520715 - 51520529
Alignment:
Q  14 aaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtga 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||    
T  51520715 aaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatattaaga 51520618  T
Q  114 gagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    ||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51520617 gagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 51520529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 45347658 - 45347830
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45347658 atggggtgtgtgcctttgatgagagtgtctcttaggtt-gggaaaaacattgtaatcaccttggggtttagggttcatagtgtgagagtgggaaaatacc 45347756  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctaga-gtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45347757 aaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagaggtcttgtaaccttttgtaacacttt 45347830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 3814266 - 3814096
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3814266 atggggtgtgtgtctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 3814168  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  3814167 aaagggtag-atctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacacttt 3814096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 45357138 - 45357309
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45357138 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttggggtttagggttcatagtgtgagagtgggaaaatacc 45357236  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  45357237 aaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacacttt 45357309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 5732907 - 5732737
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  5732907 atggggtgtgtgcctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggattaagggtttatagtgtgagagtgggaaaatacc 5732809  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  5732808 aaagggtag-atctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacacttt 5732737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 18855933 - 18855799
Alignment:
Q  66 ttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagct 165  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||||    
T  18855933 ttgggaaaaacattgtaatcaccttgggattgtgggttcatagtgtgagagtgggaaaataccaaagggtag-ttctagggtttgttcatgtgtaaagct 18855835  T
Q  166 tga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    ||| | ||||||||||||||||||||||||||||||    
T  18855834 tgataagctagagtcttgtaaccttttgtaacactt 18855799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 18712589 - 18712677
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  18712589 tagcaaaggagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgttatcaccttgggttttagg 18712677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24742253 - 24742174
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24742253 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 24742174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 29760954 - 29760874
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  29760954 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggt 29760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 24742121 - 24742013
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  24742121 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 24742023  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  24742022 gtaacacttt 24742013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 29760821 - 29760714
Alignment:
Q  96 ttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgttt-atgtgtaaagcttgaaggcta--gagtcttgtaaccttttg 192  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||  ||||||  ||||| ||||||| ||||||  |  |||||||||| ||||    
T  29760821 ttagggttcatagtgtgagagtggggaaacaccaaagggtagaatctaggtcttgtttcttgtgt-aagcttgcaggctattgtttcttgtaaccctttg 29760723  T
Q  193 taacacttt 201  Q
    |||||||||    
T  29760722 taacacttt 29760714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 56146664 - 56146724
Alignment:
Q  142 taggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  56146664 tagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 56146724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 22173018 - 22173208
Alignment:
Q  10 tagcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagt 109  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  22173018 tagcaaagtagggaaccaa-tgggttgagtgtctttgttgagagtgtctcttgggtt-gggaaaaacattgtaatcaccttgggttttagggttcatatt 22173115  T
Q  110 gtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag-tcttgtaaccttttgtaacacttt 201  Q
      ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22173116 aggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacacttt 22173208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 18656677 - 18656507
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| ||||||||| |||| |||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  18656677 atggggtgtgtgcctttgatgagagtgtttcttaggtt-gggaaaaacattgtaatcaccttgggattaagggtttatagtgtgagagtgggaaaatacc 18656579  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacacttt 201  Q
    ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  18656578 aaagggtag-atctagggtttgttcatgtgtaaagcttgaatgctagagtcttgtaaccttttgtaacacttt 18656507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 2676939 - 2677097
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||    
T  2676939 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggatttagggttcatagtgtgaggatgggaaaataccaaagggtag-at 2677037  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  | ||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  2677038 ctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 2677097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 24968340 - 24968182
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||| ||    
T  24968340 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggatttagggttcatagtgtgaggatgggaaagtaccaaagggtag-at 24968242  T
Q  141 ctaggctttgtttatgtgtaaagcttgaa-ggctagagtcttgtaac-cttttgtaacac 198  Q
    || || |||||| ||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  24968241 ctcgggtttgttcatgtgtaaagcttgaatagctagattcttgtaactcttttgtaacac 24968182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 28501613 - 28501722
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag--tcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||| ||  |||||||||||||||||||||||  ||||||||||||||    
T  28501613 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaacctttt 28501712  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  28501713 gtaacacttt 28501722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 28503780 - 28503889
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggctagag--tcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||| ||  |||||||||||||||||||||||  ||||||||||||||    
T  28503780 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaacctttt 28503879  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  28503880 gtaacacttt 28503889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 2672783 - 2672941
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||||| ||    
T  2672783 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttgggatttaaggttcatagtgtgaggatgggaaaataccaaagggtag-at 2672881  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  | ||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  2672882 ctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 2672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 7167558 - 7167478
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  7167558 caaaggagggaaccaaa-gggttgagtgtctttgttgagagtgtctcttgggttgggaaaaaacattgtaatcaccttgggt 7167478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 28501480 - 28501560
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28501480 caaaggagggaaccaaaagggatgagtgtctttgttgagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 28501560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 28503647 - 28503727
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  28503647 caaaggagggaaccaaaagggttgagtgtctttgttgagagtgtctcttggg-ttgggaaaaatattgtaatcaccttgggt 28503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 2671370 - 2671449
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2671370 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 2671449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 40372580 - 40372659
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  40372580 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 40372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 7167425 - 7167317
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 191  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||||||||||||  |  |||||||||| |||    
T  7167425 ttttagggttcatattgtgagagtggggaaataccaaagggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaacccttt 7167327  T
Q  192 gtaacacttt 201  Q
    ||||||||||    
T  7167326 gtaacacttt 7167317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 8477674 - 8477598
Alignment:
Q  16 aggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  8477674 aggagggaaccaaa-gggttgagtgtctttgtagagagtgtctcttggg-ttgggaaaaacattgtaatcaccttgggt 8477598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 8738846 - 8738926
Alignment:
Q  12 gcaaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  8738846 gcaaaggagggaaccaa-tgggttgagtgtctttgtagagagtatctcttggg-ttgggaaaaacattgtaatcaccttgggt 8738926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 9091085 - 9091164
Alignment:
Q  13 caaaggagggaaccaaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  9091085 caaaggagggaaccaaa-gggttgagtgtctttgtagagagtatctcttgggtt-gggaaaaacattgtaatcaccttgggt 9091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 8512450 - 8512292
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  8512450 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 8512352  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  8512351 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 8512292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 8517330 - 8517172
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  8517330 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 8517232  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  8517231 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 8517172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 8738982 - 8739087
Alignment:
Q  97 tagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaaccttttgta 194  Q
    ||||||||||| |||||||||||| ||||||  | ||||||||||||||  |||||  ||||| ||||||||||||||  |  |||||||||| ||||||    
T  8738982 tagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgta 8739080  T
Q  195 acacttt 201  Q
    |||||||    
T  8739081 acacttt 8739087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 9091220 - 9091325
Alignment:
Q  97 tagggttcatagtgtgagagtgggaaaataccaaagggtagaatctaggctttgtttatgtgtaaagcttgaaggcta--gagtcttgtaaccttttgta 194  Q
    ||||||||||| |||||||||||| ||||||  | ||||||||||||||  |||||  ||||| ||||||||||||||  |  |||||||||| ||||||    
T  9091220 tagggttcatattgtgagagtggggaaatacatatgggtagaatctagggattgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgta 9091318  T
Q  195 acacttt 201  Q
    |||||||    
T  9091319 acacttt 9091325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 8477545 - 8477435
Alignment:
Q  94 ttttagggttcatagtgtgagagt-gggaaaataccaaagggtagaatctaggctttgttta-tgtgtaaagcttgaaggcta--gagtcttgtaacctt 189  Q
    |||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||  ||||||| ||||| ||||||| | ||||  |  |||||||||| |    
T  8477545 ttttagggttcatattgtgagagtgggggaaacaccaaagggtagaatctaggtcttgtttattgtgt-aagcttgcaagctattgtttcttgtaaccct 8477447  T
Q  190 ttgtaacacttt 201  Q
    ||||||||||||    
T  8477446 ttgtaacacttt 8477435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 1306239 - 1306179
Alignment:
Q  33 gttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||| | |||  ||||||||||| |||||||||||||||| ||||||||||    
T  1306239 gttgagtgtctttgtagtgaggatctcttgggtt-gggaaaaacattgtaaacaccttgggt 1306179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 26928507 - 26928558
Alignment:
Q  94 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagg 145  Q
    |||||||||||||| |||||||||||| ||| || || ||||||||||||||    
T  26928507 ttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctagg 26928558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 605 - 435
Alignment:
Q  29 atgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaatacc 128  Q
    ||||| || ||| ||||| |||||| || |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  605 atggggtgtgtgcctttgatgagagagtttcttaggtt-gggaaaaacattgtaatcaccttgggattttgggttcatagtgtgagagtgggaaaatacc 507  T
Q  129 aaagggtagaatctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaaccttttgtaacactt 200  Q
    |||||||||  |||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  506 aaagggtag-ttctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 2103 - 2261
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| ||||||||||||| ||    
T  2103 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-at 2201  T
Q  141 cta-ggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||| || ||||| | |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  2202 ctatggttttgtct-tgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 2261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 148808 - 148966
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| ||||||||||||| ||    
T  148808 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-at 148906  T
Q  141 cta-ggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||| || ||||| | |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  148907 ctatggttttgtct-tgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 148966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 14161 - 14319
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||  |    
T  14161 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag-gt 14259  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  14260 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 14319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 19017 - 19175
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtagaat 140  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||  ||  ||||||||||||||||  ||||||| ||||||||||||| ||    
T  19017 ctttgatgagagtgtttcttaggttgggaaaacaacattgtaatcaccttggaattatgggttcatagtgtgaggttgggaaattaccaaagggtag-at 19115  T
Q  141 ctaggctttgtttatgtgtaaagcttga-aggctagagtcttgtaac-cttttgtaacac 198  Q
    ||||| |||  |  |||||||||||||| | |||||| ||||||||| ||||||||||||    
T  19116 ctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacac 19175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 176829 - 176925
Alignment:
Q  42 ctttgttgagagtgtctcttgggtttgggaaa-aacattgtaatcaccttgggttttagggttcatagtgtgagagtgggaaaataccaaagggtag 137  Q
    ||||| ||||||||| |||| |||| || ||| |||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||||||||||||    
T  176829 ctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcaccttgggattatgggttcatagtgtgaggttgggaaattaccaaagggtag 176925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 17756 - 17818
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||    
T  17756 gggttgagtgtctttgtagagaggatctcttgggtt-gggaaaaacattgtaatcaccttgggt 17818  T

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Target: scaffold0188; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 23849 - 23911
Alignment:
Q  31 gggttgagtgtctttgttgagagtgtctcttgggtttgggaaaaacattgtaatcaccttgggt 94  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||    
T  23849 gggttgagtgtctttgtagagaggatctcttgggtt-gggaaaaacattgtaatcaccttgggt 23911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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