View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4730-Insertion-2 (Length: 780)

Name: NF4730-Insertion-2
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4730-Insertion-2
NF4730-Insertion-2
[»] chr7 (2 HSPs)
chr7 (12-774)||(7161493-7162251)
chr7 (397-769)||(3916869-3917237)
[»] chr8 (9 HSPs)
chr8 (402-769)||(3171534-3171897)
chr8 (402-548)||(3139901-3140047)
chr8 (404-628)||(3168048-3168274)
chr8 (402-511)||(2982523-2982632)
chr8 (410-511)||(2707759-2707860)
chr8 (403-504)||(2909011-2909112)
chr8 (407-459)||(3004665-3004717)
chr8 (429-520)||(3280253-3280344)
chr8 (415-528)||(2913962-2914075)
[»] scaffold0065 (2 HSPs)
scaffold0065 (407-542)||(47773-47908)
scaffold0065 (651-773)||(47549-47669)
[»] chr1 (1 HSPs)
chr1 (404-527)||(10753402-10753525)


Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 12 - 774
Target Start/End: Complemental strand, 7162251 - 7161493
Alignment:
Q  12 ttatgttggaagattgtgttcttcgatatttaatttttcatcaaacatagtcaccttcaatggatgtttatgaaaatggtgaagagttagagatgnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||         
T  7162251 ttatgttggaagattgtgttcttcgatatttaatttttcttcaaacatagtcaccttcaatggatgtttatgaaaatggtgatgagttagagatgaaaaa 7162152  T
Q  112 nnggttttgaaaatgtatatgaacaatagaattttttgaccaagatttttgttcgtctactctaaggaactattgagatacactagcttcatctactatt 211  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7162151 aaggttttgaaaatgtatatgaacaatagaattttttgaccaagatttttgttcgtctactctaaggaaccattgagatacactagcttcatctactatt 7162052  T
Q  212 tcaagagaaactaataatgaaggaaggtgaagccattatctgccatttctagtactcaatgatccaactaatacaagaatgaaatccatttattttttgg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7162051 tcaagagaaactaataatgaaggaaggtgaagccattatctgccatttctagtactcaatgatccaactaatacaagaatgaaatccatttattttttgg 7161952  T
Q  312 aaatcaagaaaatcaaacaacagaaaccaaataacattagcaatgattttaagaggatattggtacctcttttaaagaaatgcatatctctttaagatta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161951 aaatcaagaaaatcaaacaacagaaaccaaataacattagcaatgattttaagaggatattggtacctcttttaaagaaatgcatatctctttaagatta 7161852  T
Q  412 tgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagtt 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||    
T  7161851 tgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacattcttcaagtaagagggggcactcggtgatttctagggtctgtaagtt 7161752  T
Q  512 ggctagacgagacattcttttgggcagcgaatccaaattttg--agtctttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaat 609  Q
    ||| ||||||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  7161751 ggccagacgagacattcttttgggcagtgaagccaaattttgacagtctttaatggtgatatgctgaagtgacgagaggttgcaaatccaatccggcaat 7161652  T
Q  610 gactttagatcggaacaatatgaaacttcgatcaatgttttgcaaggaaggaagatagttgagggtcgtccttaaaccaaatttcaatttcctgaaatgt 709  Q
    |||||||||||||||||||||||||||    ||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7161651 gactttagatcggaacaatatgaaact----tcaatattttgcaaggatggaagatagttta-ggtcgtccttaaaccaaatttcaatttcctgaaatgt 7161557  T
Q  710 tcgacttggaagcttcataaaaacaaagatgctcgagagaagtcagattttgcacccaatccttc 774  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  7161556 tcgacttggaagcttcataaaaac-aagatgctcgagggaagtcagattttgcacccaatccttc 7161493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 397 - 769
Target Start/End: Original strand, 3916869 - 3917237
Alignment:
Q  397 atctctttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttc 496  Q
    ||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||| ||||||||| ||   | |||||||    
T  3916869 atctctttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttc 3916968  T
Q  497 tagggtctgtaagttggctagacgagacattcttttgggcagcgaatccaaattt-tg-agtctttaatggtgatatgtagaagtgacgagaggttgcaa 594  Q
    |||||||||||| ||||| ||||| | ||||| || ||||||||||||||||||| || |||||  |||||| |||||  ||||||| |||| |||| ||    
T  3916969 tagggtctgtaatttggcaagacgtggcattccttcgggcagcgaatccaaatttatgcagtctgcaatggttatatgctgaagtgaggagatgttgaaa 3917068  T
Q  595 atccactccggcaatgactttagatcggaacaatatgaaacttcgatcaatgttttgcaaggaaggaagatagttgagggtcgtccttaaaccaaatttc 694  Q
    ||||| || ||||||| | ||||||| |||||||   ||| |    | ||| ||||||| ||||||||||||| |||   || ||||||||||||||| |    
T  3917069 atccaatcaggcaatgccattagatctgaacaatgccaaaat----ttaattttttgcagggaaggaagatagctga-tctcttccttaaaccaaattcc 3917163  T
Q  695 aatttcctgaaatgttcgacttggaagcttcataaaaacaaagatgctcgagagaagtcagattttgcacccaat 769  Q
    |||||||||||||||  || ||||||||||||| ||||| ||||||||| |||||||  |||||| |||||||||    
T  3917164 aatttcctgaaatgtctgatttggaagcttcat-aaaactaagatgctcaagagaagatagatttcgcacccaat 3917237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 402 - 769
Target Start/End: Original strand, 3171534 - 3171897
Alignment:
Q  402 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 501  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| || || |||||| ||| ||||||||    
T  3171534 tttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctaggg 3171633  T
Q  502 tctgtaagttggctagacgagacattcttttgggcagcgaatccaaatttt--gagtctttaatggtgatatgtagaagtgacgagaggttgcaaatcca 599  Q
    ||||||| ||||| ||| | | |||||||  |||||||||| |||||||||   |||  |  |||||||||||  |||||||||||||||||||||||||    
T  3171634 tctgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtactcgatggtgatatgctgaagtgacgagaggttgcaaatcca 3171733  T
Q  600 ctccggcaatgactttagatcggaacaatatgaaacttcgatcaatgttttgcaaggaaggaagatagttgagggtcgtccttaaaccaaatttcaattt 699  Q
     || ||||||| ||||||||  |||||||   ||| |    | ||| ||| ||||||||||||||||||||| | ||||||| |||  ||||||  ||||    
T  3171734 gtctggcaatgcctttagatacgaacaattgcaaaat----ttaatatttcgcaaggaaggaagatagttga-gatcgtcctgaaatgaaatttggattt 3171828  T
Q  700 cctgaaatgttcgacttggaagcttcataaaaacaaagatgctcgagagaagtcagattttgcacccaat 769  Q
    ||||||||||| |||||||||| |    ||||||  |||||||  ||||||||||||||||||| |||||    
T  3171829 cctgaaatgtttgacttggaagatgaccaaaaac-tagatgcttcagagaagtcagattttgcatccaat 3171897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 402 - 548
Target Start/End: Original strand, 3139901 - 3140047
Alignment:
Q  402 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 501  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||    || |||||||  |||| |||||    
T  3139901 tttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacattcttcaattaaatcaggacaatcagcaatttgtaggg 3140000  T
Q  502 tctgtaagttggctagacgagacattcttttgggcagcgaatccaaa 548  Q
    ||||||| ||||| || |||| ||||| || |||||||||| |||||    
T  3140001 tctgtaatttggcaaggcgaggcattccttcgggcagcgaagccaaa 3140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 404 - 628
Target Start/End: Original strand, 3168048 - 3168274
Alignment:
Q  404 taagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtc 503  Q
    |||||||||| |||||||||||| |||||| | |||||||||||||||||||||| || ||||||||| ||||||||| ||  ||  |||||| |||||     
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  504 tgtaagttggctagacgagacattcttttgggcagcgaatccaaattttga-gtct-ttaatggtgatatgtagaagtgacgagaggttgcaaatccact 601  Q
    ||||| ||||  ||||| | ||||| || |||||||||| |||||||  ||  ||| | |||| |||||||  ||||||| ||||| ||||||||||| |    
T  3168148 tgtaatttggaaagacggggcattccttcgggcagcgaagccaaattacgacatctctgaatgctgatatgctgaagtgaggagagattgcaaatccaat 3168247  T
Q  602 ccggcaatgactttagatcggaacaat 628  Q
    | ||||||  ||||||||| |||||||    
T  3168248 ctggcaatacctttagatctgaacaat 3168274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 402 - 511
Target Start/End: Complemental strand, 2982632 - 2982523
Alignment:
Q  402 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 501  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |  |||||  || || ||| ||||||||| ||    
T  2982632 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgagctaagaatggacattcaatgatttctaagg 2982533  T
Q  502 tctgtaagtt 511  Q
    | ||||||||    
T  2982532 tatgtaagtt 2982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 410 - 511
Target Start/End: Original strand, 2707759 - 2707860
Alignment:
Q  410 tatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaag 509  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||||| ||||| | |||| |||| |||||| || |||  | ||||||||| ||| ||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  510 tt 511  Q
    ||    
T  2707859 tt 2707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 504
Target Start/End: Original strand, 2909011 - 2909112
Alignment:
Q  403 ttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggt 502  Q
    ||||||||||| ||||||||||||||| ||| ||||| || ||| ||||||| | |||| | |||| || ||| ||||| ||  || |||||||||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgtttgcgcctcacactctttaactaacaggggacatccaatgatttctagggt 2909110  T
Q  503 ct 504  Q
    ||    
T  2909111 ct 2909112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 407 - 459
Target Start/End: Complemental strand, 3004717 - 3004665
Alignment:
Q  407 gattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtct 459  Q
    ||||||| ||||||||||||||||||||| |||  |||||||||||| |||||    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtct 3004665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 3280253 - 3280344
Alignment:
Q  429 attttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacg 520  Q
    ||||| ||||||||| ||| ||||||||||| | ||||||||| ||| | ||| ||  || ||||||||| |||||||||||| | ||||||    
T  3280253 attttgggccatgtttcacctgtttgtgtctgacattcttcaactaaaatgggacatccaatgatttctatggtctgtaagttagttagacg 3280344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 528
Target Start/End: Original strand, 2913962 - 2914075
Alignment:
Q  415 ttgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggc 514  Q
    |||| |||||||||||||| |||||  || |||||| || || |||| |||||| ||  || ||||| || ||  ||||||||||||||||||| ||||     
T  2913962 ttggaatgtgagcaattttgggccaattttcacttgattctgcctcacattctttaaccaacaggggacattcgatgatttctagggtctgtaatttggt 2914061  T
Q  515 tagacgagacattc 528  Q
     ||||||| |||||    
T  2914062 gagacgaggcattc 2914075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 542
Target Start/End: Complemental strand, 47908 - 47773
Alignment:
Q  407 gattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgt 506  Q
    ||||||| |||| ||||||| |||||| ||| ||||||||||||||||||||||| | ||| ||| ||||| | | || | | |||||||||||||||||    
T  47908 gattatgtttggaatgtgagaaattttgggcaatgttgcacttgtttgtgtctcacactctgcaaataagaagcgacatttaatgatttctagggtctgt 47809  T
Q  507 aagttggctagacgagacattcttttgggcagcgaa 542  Q
    || ||||  || | || ||||| || ||||||||||    
T  47808 aatttggaaaggcaaggcattccttcgggcagcgaa 47773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 773
Target Start/End: Complemental strand, 47669 - 47549
Alignment:
Q  651 gcaaggaaggaagatagttgagggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaaagatgctcgagagaa 750  Q
    |||||||||| ||||||||| ||||| |||  ||||||| |||||||||||||||||| | || ||||||||    || |||| || ||| || ||||||    
T  47669 gcaaggaagggagatagttg-gggtcttccacaaaccaattttcaatttcctgaaatgattgatttggaagc-gagtacaaaccaatatgatcaagagaa 47572  T
Q  751 gtcagattttgcacccaatcctt 773  Q
    |||| ||||||||||||||||||    
T  47571 gtcaaattttgcacccaatcctt 47549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 404 - 527
Target Start/End: Original strand, 10753402 - 10753525
Alignment:
Q  404 taagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtc 503  Q
    ||||| |||| ||||||||||||| ||||||||||  ||||||||||||| | ||  | |||| |||| |||||| || || ||| ||||||||| |||     
T  10753402 taagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctcaattaagagtggacattcaatgatttctaaggtt 10753501  T
Q  504 tgtaagttggctagacgagacatt 527  Q
    | ||||||||  ||||||| ||||    
T  10753502 tttaagttggtaagacgaggcatt 10753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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