View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4730-Insertion-3 (Length: 585)
Name: NF4730-Insertion-3
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4730-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Original strand, 6962564 - 6963136
Alignment:
| Q |
8 |
tatttgtgtacctatttagttattttatgtatgttgattgactaatgattattgtggaattaataatattcagggagcaagtgcagaaggtgctccaaag |
107 |
Q |
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| T |
6962564 |
tatttatgtacctatttagttattttatgtatgttgattgactaatgattattgtggaattaataatattcagggagcaagtgcagaaggtgctccaaag |
6962663 |
T |
|
| Q |
108 |
cgactaacctttgacgaaatccagagcaaaacatacttagaagtgaaaggaacaggaacagctaaccaatgtccaacaattgaaggtggatcggactcat |
207 |
Q |
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| T |
6962664 |
cgactaacctttgacgaaatccagagcaaaacatacttagaagtgaaaggaacaggaacagctaaccaatgtccaacaattgaaggtggatccgactcat |
6962763 |
T |
|
| Q |
208 |
tctccttcaagtcaggaaaatacaatgcnnnnnnnttctgcctcgaaccaacttcattcacagtaaaatccgaaggcgtaaccaaaaactccccgctcga |
307 |
Q |
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| T |
6962764 |
tctccttcaagtcaggaaaatacaatgcaaaaaaattctgccttgaaccaacttcattcacagtaaaatccgaaggcataactaaaaactccccgctcga |
6962863 |
T |
|
| Q |
308 |
tttccaaaatactaagctaatgacgcgcttgacatacacgttggacgagatagaaggaccattcgaagtatctcctgacggtacagtcaaattcgaggag |
407 |
Q |
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| T |
6962864 |
tttccaaaatactaagctaatgacgcgcttgacatacacgctggacgagatagaaggaccattcgaagtatctcctgacggtacagtcaaattcgaggag |
6962963 |
T |
|
| Q |
408 |
aaagatggcattgattatgctgctgtgactgttcagctccctggaggcgagcgcgtgccattcctcttcacgatcaaacagttggtagcgtcaggggaag |
507 |
Q |
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| T |
6962964 |
aaagatggcattgattatgctgctgtgactgttcagctccccggaggcgagcgcgtgccattcctcttcacgatcaaacagttggtagcgtca-gggaag |
6963062 |
T |
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| Q |
508 |
ccgggacagctttagtggagagtttttagtaccatcttaccgagggttcgtcgttcttggacccaaagggaagagg |
583 |
Q |
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| T |
6963063 |
cc-ggacagctttagtggagagtttttagtaccatcttaccga-ggttcgtcgttcttggacccaaagggaagagg |
6963136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 76 - 583
Target Start/End: Complemental strand, 33606678 - 33606174
Alignment:
| Q |
76 |
ttcagggagcaagtgcagaaggtgctccaaagcgactaacctttgacgaaatccagagcaaaacatacttagaagtgaaaggaacaggaacagctaacca |
175 |
Q |
| |
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||||||||||||||||||||||||| |||||| | || || || |||||||| || ||||||||||| || ||||| |||||||| |||||||| ||||| |
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| T |
33606678 |
ttcagggagcaagtgcagaaggtgcaccaaagaggctgacattcgacgaaattcaaagcaaaacatatttggaagtcaaaggaaccggaacagcaaacca |
33606579 |
T |
|
| Q |
176 |
atgtccaacaattgaaggtggatcggactcattctccttcaagtcaggaaaatacaatgcnnnnnnnttctgcctcgaaccaacttcattcacagtaaaa |
275 |
Q |
| |
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||||||||| ||||| || ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
33606578 |
atgtccaaccattgatggaggagtagactcattctccttcaaaccaggaaaatacaacgccaagaaattctgcctcgaaccaacttcattcacagttaaa |
33606479 |
T |
|
| Q |
276 |
tccgaaggcgtaaccaaaaactccccgctcgatttccaaaatactaagctaatgacgcgcttgacatacacgttggacgagatagaaggaccattcgaag |
375 |
Q |
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| T |
33606478 |
gcagaaggtgtaaccaagaacaccccacttgcattccaaaacaccaaactcatgacacgtttaacctacaccctcgacgagattgaaggaccctttgagg |
33606379 |
T |
|
| Q |
376 |
tatctcctgacggtacagtcaaattcgaggagaaagatggcattgattatgctgctgtgactgttcagctccctggaggcgagcgcgtgccattcctctt |
475 |
Q |
| |
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| || | ||||| | |||||||| |||||||||||||||||||| || || || || || |||||||| || || || ||||| ||||||||||| || |
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| T |
33606378 |
tttcatcagacggctctgtcaaatttgaggagaaagatggcattgactacgccgcagtcacagttcagcttcccggtggtgagcgtgtgccattcctttt |
33606279 |
T |
|
| Q |
476 |
cacgatcaaacagttggtagcgtcaggggaagccgggacagctttagtggagagtttttagtaccatcttaccgagggttcgtcgttcttggacccaaag |
575 |
Q |
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||| |||||||| |||||||| ||| |||||||| || ||||| ||||| |||| ||| |||||||| ||| |||| | || ||||||||||||||| |
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| T |
33606278 |
caccatcaaacaattggtagcatca-gggaagcc-agagagcttcagtggtgagtatttggtaccatcatacagaggaagc-tctttcttggacccaaag |
33606182 |
T |
|
| Q |
576 |
ggaagagg |
583 |
Q |
| |
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|||||||| |
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| T |
33606181 |
ggaagagg |
33606174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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