View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4730-Insertion-5 (Length: 520)
Name: NF4730-Insertion-5
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4730-Insertion-5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 176 - 520
Target Start/End: Complemental strand, 33062627 - 33062283
Alignment:
| Q |
176 |
caaatactacatgttttagccaagattgagccatataatgtattagatgcaaaatgatgtcaccgagctgattaatttttcttgatatgaaatattgttt |
275 |
Q |
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| T |
33062627 |
caaatactacatgttttagccaagattgagccatataatgtattagatgcaaaatgatgtcaccgagcttattaatttttcttgatatgaaatattgttt |
33062528 |
T |
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| Q |
276 |
atgaaatacccattcactctgggtttctctgactccaattttcttcctcttgcatcattatctatataaacatatttttagaacattattcatattatac |
375 |
Q |
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| T |
33062527 |
atgaaatacccattcactctgggtttctctgactccaattttcttcctcttgcatcattatctatataaacatatttttagaacattattcatattatac |
33062428 |
T |
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| Q |
376 |
acaaaaagaattatacaatagatacaaatttaactcaacttggcatgtggatgttgtcatccatggtttgatggtgaaatattgtatattcttgcttagt |
475 |
Q |
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| T |
33062427 |
acaaaaagatatatacactagatacaaatttaactcaacttgacatgtggatgttgtcatccatggtttgatggtgaaatattgtatattcttgcttagt |
33062328 |
T |
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| Q |
476 |
tgtttgttgttcctacatgttggatttggacttctacatactagt |
520 |
Q |
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| T |
33062327 |
tgtttgttgttcctacatgttggatttggacttctacatactagt |
33062283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 33062875 - 33062717
Alignment:
| Q |
5 |
acaacttgtgtgtgcacttccaaaaacatatgtgtttttcaataatgagggtggagataaaacaattccctaaccttttatacgtatgtgtcaatgatgt |
104 |
Q |
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| T |
33062875 |
acaatttgtgtgtgcacttccaaaaacatatgtgtttttcaataatgagggtggagataaaacaatgccctaaccttttatacgtatgtgtcaatgatgt |
33062776 |
T |
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| Q |
105 |
caatttttgtctagctcaatgagctcatcttttagactaacttgagttcctaaattata |
163 |
Q |
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| T |
33062775 |
caatttttgtctagctcaatgagctcatcttttagactaacttgagttcctaaattata |
33062717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 33083442 - 33083368
Alignment:
| Q |
14 |
gtgtgcacttccaaaaacatatgtgtttttcaataatgagggtggagataaaacaattccctaaccttttatacgt |
89 |
Q |
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| T |
33083442 |
gtgtgcacttctaaaaacatatgggtttttcaataatgagggtggagat-aaacaatgccctaaccttttatacgt |
33083368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 33081748 - 33081696
Alignment:
| Q |
460 |
tatattcttgcttagttgtttgttgttcctacatgttggatttggacttctac |
512 |
Q |
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| T |
33081748 |
tatattcttgcttagttgtttgttgttcctacatgttggatttggacttctac |
33081696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 33081894 - 33081782
Alignment:
| Q |
228 |
aatgatgtcaccgagctgattaatttttcttgatatgaaa---tattgtttatgaaatacccattcactctgggtttctctgactccaattttcttcctc |
324 |
Q |
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| T |
33081894 |
aatgatgtcactgatcttattaatttttcttgatatgaaatactattgtttatgaaata-ccatttactctgactt--tctgactccgattctcttcctc |
33081798 |
T |
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| Q |
325 |
ttgcatcattatctat |
340 |
Q |
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| T |
33081797 |
ttgcattattatctat |
33081782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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