View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4730-Insertion-6 (Length: 492)

Name: NF4730-Insertion-6
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4730-Insertion-6
NF4730-Insertion-6
[»] chr1 (7 HSPs)
chr1 (118-492)||(9111690-9112059)
chr1 (116-158)||(49391276-49391318)
chr1 (122-159)||(21501770-21501807)
chr1 (117-158)||(38825907-38825948)
chr1 (117-158)||(49387988-49388029)
chr1 (119-159)||(4243026-4243066)
chr1 (118-158)||(43253782-43253822)
[»] chr3 (4 HSPs)
chr3 (118-406)||(16366541-16366830)
chr3 (117-235)||(16356891-16357008)
chr3 (121-159)||(26445618-26445656)
chr3 (248-319)||(41677886-41677954)
[»] chr4 (3 HSPs)
chr4 (119-392)||(895095-895367)
chr4 (119-159)||(4746799-4746839)
chr4 (124-159)||(44643064-44643099)
[»] chr6 (10 HSPs)
chr6 (137-395)||(4846052-4846305)
chr6 (419-492)||(4845984-4846057)
chr6 (11-106)||(29156643-29156738)
chr6 (117-158)||(24042027-24042068)
chr6 (118-158)||(24045342-24045382)
chr6 (119-159)||(34233387-34233427)
chr6 (117-158)||(19975746-19975787)
chr6 (118-159)||(28745822-28745863)
chr6 (119-157)||(19973347-19973385)
chr6 (117-159)||(34235082-34235124)
[»] scaffold0076 (1 HSPs)
scaffold0076 (363-492)||(6934-7062)
[»] chr8 (3 HSPs)
chr8 (205-381)||(41740144-41740322)
chr8 (415-492)||(41740011-41740090)
chr8 (118-158)||(3154495-3154535)
[»] chr7 (5 HSPs)
chr7 (246-338)||(22301453-22301547)
chr7 (117-158)||(13815403-13815444)
chr7 (117-159)||(31207096-31207138)
chr7 (119-159)||(31210487-31210527)
chr7 (117-158)||(32352862-32352903)
[»] chr2 (3 HSPs)
chr2 (117-159)||(32424596-32424638)
chr2 (119-155)||(30750185-30750221)
chr2 (119-159)||(27106930-27106969)
[»] scaffold0028 (2 HSPs)
scaffold0028 (117-159)||(127328-127369)
scaffold0028 (119-159)||(109748-109787)
[»] chr5 (1 HSPs)
chr5 (121-159)||(14837658-14837695)
[»] scaffold0002 (1 HSPs)
scaffold0002 (118-159)||(448345-448385)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 118 - 492
Target Start/End: Complemental strand, 9112059 - 9111690
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaattctaactaaatgcattcaaaaatgatgtttccacatgnnnnnnnnnatcatttcctaaa 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||    
T  9112059 ttgttgtaattttagagttttattttatttcaaa-gttaattctaactaaatccattcaaaaatgatgtttccacatgtttttttttatcatttcctaaa 9111961  T
Q  218 taagctaactatgactcagcatgcttatttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtgga 317  Q
    ||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  9111960 taagctaactatgtctcatcctgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttatt--tgtggctatttttgtgga 9111863  T
Q  318 attagtggcatgttctcacaaaatatcttgggagtatatatgataataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaag 417  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  9111862 attagtggcatgttcgcacaaaatatgttggaagtatatatgataataacacagtgctttttacgatggacaatagctgaagcacgctttttaccagaag 9111763  T
Q  418 cata-ccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccacc 492  Q
    |||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  9111762 catacccaaaatatatactttctttttag-aattt-gggaaacacttcttgatcag-aaaataccacttttccacc 9111690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 49391318 - 49391276
Alignment:
Q  116 tattgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  49391318 tattgttgtaattttagaattttattttatttcaaaagttaat 49391276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 21501807 - 21501770
Alignment:
Q  122 tgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21501807 tgtaattttagagttttattttatttcaaaagttaatt 21501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 38825948 - 38825907
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  38825948 attgttgtaattttaaagttttattttatttcaaaagttaat 38825907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 49388029 - 49387988
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  49388029 attgttttaattttagagttttattttatttcaaaagttaat 49387988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 4243066 - 4243026
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4243066 tgttgtaattttaaagttttattttatttcaaaagttaatt 4243026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 43253782 - 43253822
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    ||||||||| ||| | |||||||||||||||||||||||||    
T  43253782 ttgttgtaacttttgggttttattttatttcaaaagttaat 43253822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 118 - 406
Target Start/End: Complemental strand, 16366830 - 16366541
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaattctaactaaatgcattcaaaaatgatgtttccacatgnnnnnnnnnatcatttcctaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||||||||||||    
T  16366830 ttgttgtaattttagagttttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttccacatgtttttttt-atcatttcctaaa 16366732  T
Q  218 taagctaactatgactcagcatgcttatttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtgga 317  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16366731 taagctaactatgactcatcatgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtgga 16366632  T
Q  318 attagt-ggcatgttctcacaaaatatcttgggagtatatatgataataacatagtg-ctttttacgatggacaataccagaagcacgctt 406  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||   ||||||||||    
T  16366631 attagtgggcatgttctcacaaaatatcttgggagtatatatgataataacgtagtgtttttttacgatggacaatacatcaagcacgctt 16366541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 16357008 - 16356891
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaattctaactaaatgcattcaaaaatgatgtttccacatgnnnnnnnnnatcatttcctaa 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||         ||||||||||||    
T  16357008 attgttgtaattttatagttttattttatttcaaaagttaattctcactaaatccatccaaaaatgatgtttccacatg-ttttttttatcatttcctaa 16356910  T
Q  217 ataagctaactatgactca 235  Q
    |||||||||||||||||||    
T  16356909 ataagctaactatgactca 16356891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 26445656 - 26445618
Alignment:
Q  121 ttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  26445656 ttgtaattttagacttttattttatttcaaaagttaatt 26445618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 41677954 - 41677886
Alignment:
Q  248 agtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaat 319  Q
    |||||||||||| || ||||| ||||||||||||||||| | ||||||| ||||||||||||||| ||||||    
T  41677954 agtcaattaagcattgcctta-ttttctcaactgaaaaa-tggttttat-catgtggctatttttatggaat 41677886  T

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Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 119 - 392
Target Start/End: Original strand, 895095 - 895367
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaattctaactaaatgcattcaaaaatgatgtttccacatgnnnnnnnnnatcatttcctaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||||||  |||||    
T  895095 tgttgtaattttagagttttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttccacatgttttttt--atcattttttaaat 895192  T
Q  219 aagctaactatgactcagcatgcttatttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaa 318  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  895193 aagctaactatgactcatcatgcttacttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaa 895292  T
Q  319 ttagt-ggcatgttctcacaaaatatcttgggagtatatatgataataacatagtgctttttacgatggacaata 392  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  895293 ttagtgggcatgttctcacaatatatcttgggagtatatatgataataacatagtgttttttactatggacaata 895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 4746799 - 4746839
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4746799 tgttgtaattttagagttttattttatttcaaaagttaatt 4746839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 44643064 - 44643099
Alignment:
Q  124 taattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  44643064 taattttagagttttattttatttcaaaagttaatt 44643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 4846305 - 4846052
Alignment:
Q  137 ttattttatttcaaaagttaattctaactaaatgcattcaaaaatgatgtttccacatgnnnnnnnnnatcatttcctaaataagctaactatgactcag 236  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||         |||||||| ||||||||||||||||||||||     
T  4846305 ttattttatttcaaaagttaattctaactaaatccatccaaaaatgatgtttttacatgttttc----atcatttcttaaataagctaactatgactcaa 4846210  T
Q  237 catgcttatttagtcaattaagccttaccttaattttctcaactgaaaaaatagttttattcatgtggctatttttgtggaattagtggcatgttctcac 336  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  4846209 catgcttacttagtcaattaagccttaccttaattttctcatctg-agaaatagttttattcatgtggctatttttgtgtaattagtgacat-ttctcac 4846112  T
Q  337 aaa-atatcttgggagtatatatgataataacatagtgctttttacgatggacaatacca 395  Q
    ||| ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  4846111 aaacatatcttcggagtatatatgataataagatagtactttttacaatggacaatacca 4846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 4846057 - 4845984
Alignment:
Q  419 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccacc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846057 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccacc 4845984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 29156643 - 29156738
Alignment:
Q  11 atcacaccgctattctatttctttgtgattctctgcatattaatgaaacaaagtatgagtgagcaggtgtacgatgcatgcagccagaatgagatc 106  Q
    |||||| || ||| |||||||||||||||||||||||||| |||| |||||| |||||||||||| | || | || |||||||| |||||||||||    
T  29156643 atcacaacgttatcctatttctttgtgattctctgcatatcaatgcaacaaaatatgagtgagcatgagtgcaattcatgcagctagaatgagatc 29156738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 24042068 - 24042027
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24042068 attgttgtaattttagagttttattttatttcaaaagttaat 24042027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 24045382 - 24045342
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24045382 ttgttgtaattttagagttttattttatttcaaaagttaat 24045342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 34233387 - 34233427
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  34233387 tgttgtaattttaaagttttattttatttcaaaagttaatt 34233427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 19975746 - 19975787
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  19975746 attgttgtaattttaaggttttattttatttcaaaagttaat 19975787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 28745822 - 28745863
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  28745822 ttgttgtaattttaaagttgtattttatttcaaaagttaatt 28745863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 19973347 - 19973385
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaa 157  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  19973347 tgttgtaattttaaggttttattttatttcaaaagttaa 19973385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 34235082 - 34235124
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||||| |||||||| |||||||| |||||||||    
T  34235082 attgttgtaattttaaagttttatattatttcagaagttaatt 34235124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 363 - 492
Target Start/End: Complemental strand, 7062 - 6934
Alignment:
Q  363 ataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaagcataccaaaatatatactttctttttagcaatttggggagacact 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7062 ataagatagtgctttttacgatggacaataccagaagcacgctttt-accagaagcataccaaaatatatactttctttttagcaatttggagagacact 6964  T
Q  463 tcttgatcagaaaaataccacttttccacc 492  Q
    ||||||||||||||||||||||||||||||    
T  6963 tcttgatcagaaaaataccacttttccacc 6934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 41740322 - 41740144
Alignment:
Q  205 atcatttcctaaataagctaactatgactcagcatgcttatttagtcaattaagccttaccttaattttctcaactgaaaaaata-gttttattcatgtg 303  Q
    |||||||||||||| ||||||| ||||||| | |||||||  ||||||||||| |||||||||||| |||||||| ||||||| | |||||||| ||||     
T  41740322 atcatttcctaaatgagctaaccatgactcggtatgcttacatagtcaattaaaccttaccttaatattctcaaccgaaaaaaaaggttttatttatgtt 41740223  T
Q  304 gctatttttgtggaattagtggcatgttctcaca-aaatatcttgggagtatatatgataataacatagtgctttttac 381  Q
    |||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||| ||||||||||||    
T  41740222 gctatttttgtggaattagtggcatgttctcacacatatatgttgggaatatatatgataataacaaagtgctttttac 41740144  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 415 - 492
Target Start/End: Complemental strand, 41740090 - 41740011
Alignment:
Q  415 aagcataccaaaa-tatatactttctttt-tagcaatttggggagacacttcttgatcagaaaaataccacttttccacc 492  Q
    ||||||||||||| |||||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  41740090 aagcataccaaaaatatatactttctctcatagcaatttggagtgacacttcctgatcagaaaaataccacttttccacc 41740011  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 3154495 - 3154535
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    ||||||||| ||| | |||||||||||||||||||||||||    
T  3154495 ttgttgtaacttttgggttttattttatttcaaaagttaat 3154535  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 22301547 - 22301453
Alignment:
Q  246 ttagtcaattaagccttaccttaattttctcaactgaaaaaata--gttttattcatgtggctatttttgtggaattagtggcatgttctcacaa 338  Q
    ||||||| | ||||| | ||||||| |||||||||||||||| |  ||||||||||||| ||||||| |||||| | ||||||||||||||||||    
T  22301547 ttagtcagtcaagccatgccttaatcttctcaactgaaaaaaaatggttttattcatgttgctatttatgtggagtaagtggcatgttctcacaa 22301453  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 13815403 - 13815444
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13815403 attgttgtaattttagagttttattttatttcaaaagttaat 13815444  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 31207138 - 31207096
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  31207138 attgttataattttagagttttattttatttcaaaagttaatt 31207096  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 31210527 - 31210487
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  31210527 tgttataattttagagttttattttatttcaaaagttaatt 31210487  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 32352903 - 32352862
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaat 158  Q
    |||||||||| ||| | |||||||||||||||||||||||||    
T  32352903 attgttgtaacttttgggttttattttatttcaaaagttaat 32352862  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 32424596 - 32424638
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  32424596 attgttgtaattttagagttttattttattttaaaagttaatt 32424638  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 30750221 - 30750185
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagtt 155  Q
    |||||||||||||||||||||||||||||||||||||    
T  30750221 tgttgtaattttagagttttattttatttcaaaagtt 30750185  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 27106930 - 27106969
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  27106930 tgttgtaatttt-gagttttattttattttaaaagttaatt 27106969  T

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Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 127328 - 127369
Alignment:
Q  117 attgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  127328 attgttgtaatttt-gagttttattttatttcaaaagttaatt 127369  T

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Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 109748 - 109787
Alignment:
Q  119 tgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  109748 tgttgtaatttt-gagttttattttatttcaaaagttaatt 109787  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 14837695 - 14837658
Alignment:
Q  121 ttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  14837695 ttgtaatttt-gagttttattttatttcaaaagttaatt 14837658  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 448345 - 448385
Alignment:
Q  118 ttgttgtaattttagagttttattttatttcaaaagttaatt 159  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  448345 ttgttgtaattttagagttcta-tttatttcaaaagttaatt 448385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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