View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4730-Insertion-9 (Length: 347)
Name: NF4730-Insertion-9
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4730-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 347
Target Start/End: Original strand, 50747058 - 50747416
Alignment:
| Q |
7 |
aaatacaactaccaagttttaatgttactactcaaactcaaaaacatgaacaaagctttctcacaaaagctgttaatttcttatagaaatcagatggatc |
106 |
Q |
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| T |
50747058 |
aaatacaactaccaagttttaatgttactactcaacctcaaaaacatgaacaaagctttctcacaaaagctgttaatttcttatggaaatcagatggatc |
50747157 |
T |
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| Q |
107 |
gggttatcaacacgtgtggccggtaagatttcacttttctgttggattttatgtctttgttttatcttaaagttgaatctaaatcaaaagataaatattt |
206 |
Q |
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| T |
50747158 |
gggttatcaacacgtgtggccggtaagatttcacttttctgttggattttatgtctttgttttatcttaaagttgaatctaaatcaaaagataaatattt |
50747257 |
T |
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| Q |
207 |
ag-tttattccttcattctatggat-----------------atgtttttgtcagttattgtaactttgggtaatataataaggtgcttcttttgtttat |
288 |
Q |
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| T |
50747258 |
agttttattccttcattctatggatatgtttttgtttttcacatgtttttgtcagttattgtaactttgggtaatataataaagtgcttcttttgtttat |
50747357 |
T |
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| Q |
289 |
ttgtattgttgcaggaaatggaatttgggtggcaaattgtgttgggtagttttattgga |
347 |
Q |
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| T |
50747358 |
ttgtattgttgcaggaaatggaatttgggtggcaaattgtgttgggtagttttattgga |
50747416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 50821595 - 50821446
Alignment:
| Q |
7 |
aaatacaactaccaagttttaatgttactactcaaactcaaaaacatgaacaaagctttctcacaaaagctgttaatttcttatagaaatcagatggatc |
106 |
Q |
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| T |
50821595 |
aaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataattttctcattaaagctattaatttgttgtggaaataaaatggatt |
50821496 |
T |
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| Q |
107 |
gggttatcaacacgtgtggccggtaagatttcacttttctgttggatttt |
156 |
Q |
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| T |
50821495 |
cggttataagcatgtgtggccgattaaatttcacatttcttttggatttt |
50821446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 50854266 - 50854415
Alignment:
| Q |
7 |
aaatacaactaccaagttttaatgttactactcaaactcaaaaacatgaacaaagctttctcacaaaagctgttaatttcttatagaaatcagatggatc |
106 |
Q |
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|||||||| | ||| |||||||||||||||||||||||||||| |||||||| | ||||||| |||||| ||||||| || | ||||| | |||||| |
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| T |
50854266 |
aaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataattttctcattaaagctattaatttgttgtggaaataaaatggatt |
50854365 |
T |
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| Q |
107 |
gggttatcaacacgtgtggccggtaagatttcacttttctgttggatttt |
156 |
Q |
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| T |
50854366 |
cggttataagcatgtgtggccgattaaatttcacatttcttttggatttt |
50854415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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