View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4730_high_14 (Length: 319)
Name: NF4730_high_14
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4730_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 51302457 - 51302148
Alignment:
| Q |
1 |
gtaatgtctatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302457 |
gtaatgtctatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaat |
51302358 |
T |
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| Q |
101 |
caagttttaaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgtatgagtttggtgcg |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
51302357 |
caagttttaaagtggagaatttcttgctgtttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagtttgttgcg |
51302258 |
T |
|
| Q |
200 |
aaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302257 |
aaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttat |
51302158 |
T |
|
| Q |
300 |
ctgttctgtg |
309 |
Q |
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|||||||||| |
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| T |
51302157 |
ctgttctgtg |
51302148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 44113521 - 44113240
Alignment:
| Q |
9 |
tatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagtttt |
108 |
Q |
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| T |
44113521 |
tatgcaaggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttatttttgaa----------gcttgaaatagagtttg |
44113432 |
T |
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| Q |
109 |
aaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgtatgagtttggtgcgaaggagtt |
207 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
44113431 |
aaagtggagaatttcttactatttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagttaggtgcgaaggagtt |
44113332 |
T |
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| Q |
208 |
aggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttatctgttctg |
307 |
Q |
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|||| |||||||||| |||||||| | ||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
44113331 |
aggtacatttttagcctgttcaagtattgc------ttgtgtgctactgctggaaattttgcttg---tggggatttgttcttgg-ttttgtctgttctg |
44113242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 50016371 - 50016238
Alignment:
| Q |
14 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagt |
113 |
Q |
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||||||||||||||||||||| ||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
50016371 |
aaggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttatttttgaa----------gcttgaaattgagtttgaaagt |
50016282 |
T |
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| Q |
114 |
ggagaatttctcgctgtttcaagttttggtgaagtctgttagtt |
157 |
Q |
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| T |
50016281 |
ggagaatttcttactatttcaagttttggtgaagtctgttagtt |
50016238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 18843430 - 18843337
Alignment:
| Q |
14 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
107 |
Q |
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||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18843430 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18843337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 18854898 - 18854805
Alignment:
| Q |
14 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
107 |
Q |
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||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18854898 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18854805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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