View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4730_high_17 (Length: 305)
Name: NF4730_high_17
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4730_high_17 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 13783907 - 13784211
Alignment:
| Q |
1 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatagtcaaactagctatggaaaacacattgaaggttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
13783907 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatactcaaactagctaaggaaaacacattgaaggttcat |
13784006 |
T |
|
| Q |
101 |
catcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784007 |
catcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaa |
13784106 |
T |
|
| Q |
201 |
caaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagccgcccaaattttgttgttaggaaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13784107 |
caaacaattgatgtagaggagcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattg |
13784206 |
T |
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| Q |
301 |
aagaa |
305 |
Q |
| |
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||||| |
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| T |
13784207 |
aagaa |
13784211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 102 - 305
Target Start/End: Original strand, 33664 - 33871
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagcta----aggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaa |
197 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
33664 |
atcatacaacaaaatagtcaaactagctagctaatgaaaacacatttaagaacccatcgatagccatcacgccactttcatagtttagcaaaagttttga |
33763 |
T |
|
| Q |
198 |
aaacaaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagccgcccaaattttgttgttaggaaa |
297 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |
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| T |
33764 |
aaacaaacaattgaagtataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaag |
33863 |
T |
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| Q |
298 |
ttgaagaa |
305 |
Q |
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| |||||| |
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| T |
33864 |
tcgaagaa |
33871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33616 - 33692
Alignment:
| Q |
1 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatagtcaaactagcta |
77 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33616 |
tccaatccaaagacttcgatccaacaactagttataagtactgacaaaatcatacaacaaaatagtcaaactagcta |
33692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 102 - 305
Target Start/End: Original strand, 40793817 - 40794020
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaac |
201 |
Q |
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|||||||||||||||||||||| || | ||| ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
40793817 |
atcatacaacaaaatagtcaaattacccaagaaaaacacatttaaggaatcatcgatagccatcacaccactttcatagtctagcaaaagttctgaaaac |
40793916 |
T |
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| Q |
202 |
aaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagccgcccaaattttgttgttaggaaattga |
301 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||| |||| |
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| T |
40793917 |
aaacaattgacatagaggagcttaatgtggatgatgacgaggcaaaatcaagctatgcatatgttcatcggccgcctaaatttgattgttaggaagttga |
40794016 |
T |
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| Q |
302 |
agaa |
305 |
Q |
| |
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|||| |
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|
| T |
40794017 |
agaa |
40794020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40793769 - 40793863
Alignment:
| Q |
1 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatagtcaaactagctatggaaaacacattgaagg |
95 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| || | | | |||||||||| |||| |
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| T |
40793769 |
tccaattcaaagactttgatccaacaactatttataagtaccgacaaaatcatacaacaaaatagtcaaattacccaagaaaaacacatttaagg |
40793863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 13804 - 13632
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttct-aaaaa |
200 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| | |||| |||||||| |||| |||| |||| | || | || || || ||| ||||| |
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| T |
13804 |
atcatccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaa |
13705 |
T |
|
| Q |
201 |
caaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagc |
273 |
Q |
| |
|
|||||| ||| || | | ||| |||||||||| ||| || ||||||||||||||| ||||||||||||||||| |
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| T |
13704 |
caaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagc |
13632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13851 - 13767
Alignment:
| Q |
1 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatagtcaaactagctatggaaaaca |
86 |
Q |
| |
|
||||||||| | | ||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||| ||| |||||||| |
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| T |
13851 |
tccaatccacataatttgatccaacaactagcaacaagtaca-atgaaatcatccaacaaaatagtcaaactatctaaggaaaaca |
13767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 290
Target Start/End: Original strand, 33637299 - 33637487
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaac |
201 |
Q |
| |
|
||||| |||||||||||| |||||| ||| ||||||||| |||||||||||| |||| |||||| | |||| || || || || ||| ||| || |
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| T |
33637299 |
atcatccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatac |
33637398 |
T |
|
| Q |
202 |
aaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagccgcccaaattttgttgt |
290 |
Q |
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||||||||| || | || ||||||||||||| ||| ||| || ||||||||||| | ||||||||||||||| |||||||| ||||| |
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| T |
33637399 |
aaacaattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
33637487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 3838323 - 3838151
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttct-aaaaa |
200 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||| | |||| |||||||| |||| |||| |||| | || | || || || ||| ||||| |
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|
| T |
3838323 |
atcatccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaa |
3838224 |
T |
|
| Q |
201 |
caaacaattgatgtagaggagcttaatgtggatgagaacgaggcaaaaccaagctatgcatatgttcatcagc |
273 |
Q |
| |
|
|||||| ||| || | | ||| |||||||||||||| || ||||||||||||||| ||||||||||| ||||| |
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|
| T |
3838223 |
caaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagc |
3838151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3838370 - 3838286
Alignment:
| Q |
1 |
tccaatccaaagactttgatccaacaactagttataagtactgatgaaatcatacaacaaaatagtcaaactagctatggaaaaca |
86 |
Q |
| |
|
||||||||| | | ||||||||||||||||| |||||||| |||||||||| || |||||||||||||||| ||| |||||||| |
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|
| T |
3838370 |
tccaatccacataatttgatccaacaactagcaataagtaca-atgaaatcatccagcaaaatagtcaaactatctaaggaaaaca |
3838286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 20475632 - 20475685
Alignment:
| Q |
102 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatc |
155 |
Q |
| |
|
||||| ||||||||| || |||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
20475632 |
atcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatc |
20475685 |
T |
|
Back To:
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