View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4730_high_1_N (Length: 379)

Name: NF4730_high_1_N
Description: NF4730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4730_high_1_N
NF4730_high_1_N
[»] chr4 (15 HSPs)
chr4 (213-284)||(26444584-26444655)
chr4 (213-284)||(46739871-46739942)
chr4 (214-284)||(35659455-35659525)
chr4 (215-284)||(19567235-19567304)
chr4 (214-281)||(12622069-12622136)
chr4 (234-284)||(12622166-12622216)
chr4 (335-378)||(21061317-21061360)
chr4 (214-284)||(16027372-16027442)
chr4 (214-284)||(35659355-35659425)
chr4 (234-284)||(44024856-44024906)
chr4 (335-378)||(15608085-15608128)
chr4 (335-377)||(15098826-15098868)
chr4 (305-347)||(38106996-38107038)
chr4 (338-375)||(50159809-50159846)
chr4 (234-266)||(3484485-3484517)
[»] chr2 (12 HSPs)
chr2 (212-311)||(21317011-21317110)
chr2 (213-311)||(21337002-21337100)
chr2 (213-284)||(1385016-1385087)
chr2 (214-284)||(1385117-1385187)
chr2 (234-284)||(10744580-10744630)
chr2 (214-268)||(21367510-21367564)
chr2 (343-378)||(10898272-10898307)
chr2 (343-378)||(19357585-19357620)
chr2 (170-215)||(1385016-1385061)
chr2 (120-172)||(1385109-1385161)
chr2 (335-375)||(22689440-22689480)
chr2 (234-266)||(32215770-32215802)
[»] chr3 (22 HSPs)
chr3 (214-311)||(17206804-17206901)
chr3 (213-284)||(17206740-17206811)
chr3 (214-284)||(24545350-24545420)
chr3 (214-284)||(24549327-24549397)
chr3 (214-284)||(24553953-24554023)
chr3 (214-284)||(24557012-24557082)
chr3 (217-280)||(54331675-54331738)
chr3 (322-374)||(13523755-13523807)
chr3 (234-284)||(11191225-11191275)
chr3 (238-284)||(12860502-12860548)
chr3 (234-284)||(16180665-16180715)
chr3 (336-378)||(43890742-43890784)
chr3 (322-374)||(13521059-13521111)
chr3 (343-379)||(15024792-15024828)
chr3 (343-378)||(6806913-6806948)
chr3 (335-378)||(11887765-11887808)
chr3 (343-378)||(35066055-35066090)
chr3 (343-377)||(19574479-19574513)
chr3 (349-378)||(19569743-19569772)
chr3 (337-378)||(20416911-20416952)
chr3 (120-172)||(17206857-17206909)
chr3 (338-378)||(46751741-46751781)
[»] scaffold1256 (2 HSPs)
scaffold1256 (212-284)||(579-651)
scaffold1256 (214-284)||(681-751)
[»] chr6 (19 HSPs)
chr6 (214-284)||(23492817-23492887)
chr6 (214-284)||(23498415-23498485)
chr6 (215-284)||(19958208-19958277)
chr6 (213-284)||(22555875-22555946)
chr6 (308-374)||(17104914-17104980)
chr6 (234-284)||(23492734-23492784)
chr6 (234-284)||(23498332-23498382)
chr6 (306-374)||(19657163-19657231)
chr6 (335-378)||(31736091-31736134)
chr6 (338-379)||(15895580-15895621)
chr6 (335-378)||(18260390-18260433)
chr6 (343-378)||(19774653-19774688)
chr6 (307-378)||(22212759-22212828)
chr6 (343-378)||(22804864-22804899)
chr6 (335-378)||(23083537-23083580)
chr6 (120-172)||(23492809-23492861)
chr6 (120-172)||(23498407-23498459)
chr6 (234-266)||(23991898-23991930)
chr6 (234-266)||(34962761-34962793)
[»] chr1 (15 HSPs)
chr1 (214-284)||(44891318-44891388)
chr1 (305-374)||(41230389-41230458)
chr1 (214-284)||(17904357-17904427)
chr1 (214-284)||(24721121-24721191)
chr1 (214-284)||(45473852-45473922)
chr1 (237-284)||(6832986-6833033)
chr1 (213-284)||(44891227-44891298)
chr1 (335-378)||(21238532-21238575)
chr1 (343-378)||(22349163-22349198)
chr1 (343-378)||(24724054-24724089)
chr1 (335-378)||(42696510-42696553)
chr1 (335-377)||(45754261-45754303)
chr1 (249-285)||(12709839-12709875)
chr1 (234-266)||(14239064-14239096)
chr1 (120-172)||(44891344-44891396)
[»] scaffold0032 (1 HSPs)
scaffold0032 (305-374)||(63744-63813)
[»] scaffold0004 (1 HSPs)
scaffold0004 (306-374)||(198791-198859)
[»] chr5 (12 HSPs)
chr5 (216-288)||(26646366-26646438)
chr5 (213-284)||(6551786-6551857)
chr5 (217-284)||(6551916-6551983)
chr5 (214-285)||(12354851-12354922)
chr5 (234-284)||(14027168-14027218)
chr5 (335-378)||(25251111-25251154)
chr5 (335-378)||(25314896-25314939)
chr5 (335-378)||(25742641-25742684)
chr5 (220-275)||(8834459-8834514)
chr5 (343-378)||(16226601-16226636)
chr5 (343-378)||(20565024-20565059)
chr5 (234-284)||(8505025-8505075)
[»] scaffold0231 (1 HSPs)
scaffold0231 (213-284)||(19129-19200)
[»] scaffold0063 (1 HSPs)
scaffold0063 (213-284)||(61447-61518)
[»] scaffold0011 (2 HSPs)
scaffold0011 (214-284)||(39599-39669)
scaffold0011 (214-284)||(39499-39569)
[»] scaffold0061 (1 HSPs)
scaffold0061 (307-374)||(20094-20161)
[»] scaffold0108 (3 HSPs)
scaffold0108 (214-284)||(8221-8291)
scaffold0108 (343-378)||(4905-4940)
scaffold0108 (120-172)||(8213-8265)
[»] chr8 (22 HSPs)
chr8 (214-284)||(2718068-2718138)
chr8 (214-284)||(36733872-36733942)
chr8 (306-374)||(5759837-5759905)
chr8 (214-285)||(22473109-22473180)
chr8 (214-284)||(22473210-22473280)
chr8 (220-284)||(6574350-6574414)
chr8 (217-284)||(18820422-18820489)
chr8 (335-378)||(23947069-23947112)
chr8 (213-284)||(36406297-36406368)
chr8 (234-284)||(18820339-18820389)
chr8 (335-379)||(17908148-17908192)
chr8 (335-378)||(17217376-17217419)
chr8 (335-378)||(22244194-22244237)
chr8 (335-378)||(23888515-23888558)
chr8 (343-378)||(22238711-22238746)
chr8 (343-378)||(22584958-22584993)
chr8 (343-378)||(39696067-39696102)
chr8 (343-378)||(42267044-42267079)
chr8 (338-378)||(13665683-13665723)
chr8 (338-378)||(13724958-13724998)
chr8 (234-266)||(16414120-16414152)
chr8 (234-266)||(32121123-32121155)
[»] chr7 (20 HSPs)
chr7 (213-284)||(9744447-9744518)
chr7 (214-284)||(9744357-9744427)
chr7 (214-284)||(15577259-15577329)
chr7 (335-378)||(15281051-15281094)
chr7 (234-284)||(13134276-13134326)
chr7 (238-283)||(20253970-20254015)
chr7 (337-377)||(11053440-11053480)
chr7 (171-214)||(9744357-9744400)
chr7 (343-378)||(14220462-14220497)
chr7 (343-378)||(14257362-14257397)
chr7 (343-378)||(16578742-16578777)
chr7 (343-378)||(16581490-16581525)
chr7 (343-378)||(16586885-16586920)
chr7 (335-378)||(17130960-17131003)
chr7 (343-378)||(32300293-32300328)
chr7 (343-378)||(47093736-47093771)
chr7 (335-377)||(33000752-33000794)
chr7 (349-378)||(4070524-4070553)
chr7 (335-375)||(9390262-9390302)
chr7 (335-379)||(16075876-16075920)
[»] scaffold0453 (1 HSPs)
scaffold0453 (238-284)||(6012-6058)
[»] scaffold0213 (1 HSPs)
scaffold0213 (214-284)||(17854-17924)
[»] scaffold0010 (1 HSPs)
scaffold0010 (335-378)||(127637-127680)
[»] scaffold0628 (1 HSPs)
scaffold0628 (217-284)||(4850-4918)
[»] scaffold0083 (2 HSPs)
scaffold0083 (335-378)||(11924-11967)
scaffold0083 (335-378)||(7790-7833)
[»] scaffold0877 (1 HSPs)
scaffold0877 (307-374)||(3591-3659)
[»] scaffold0065 (1 HSPs)
scaffold0065 (338-378)||(54665-54705)
[»] scaffold0445 (1 HSPs)
scaffold0445 (335-378)||(3183-3226)
[»] scaffold0331 (2 HSPs)
scaffold0331 (338-377)||(13333-13372)
scaffold0331 (338-377)||(13533-13572)
[»] scaffold0285 (1 HSPs)
scaffold0285 (343-378)||(22422-22457)
[»] scaffold0227 (1 HSPs)
scaffold0227 (335-378)||(27600-27643)
[»] scaffold0220 (1 HSPs)
scaffold0220 (335-378)||(17227-17270)
[»] scaffold0151 (1 HSPs)
scaffold0151 (335-378)||(23960-24003)
[»] scaffold0113 (1 HSPs)
scaffold0113 (234-285)||(33543-33594)
[»] scaffold0077 (1 HSPs)
scaffold0077 (343-378)||(29085-29120)
[»] scaffold0042 (1 HSPs)
scaffold0042 (335-378)||(28070-28113)
[»] scaffold0026 (1 HSPs)
scaffold0026 (343-378)||(23327-23362)
[»] scaffold0241 (2 HSPs)
scaffold0241 (343-377)||(1013-1047)
scaffold0241 (348-378)||(4518-4548)
[»] scaffold0096 (1 HSPs)
scaffold0096 (343-377)||(12994-13028)
[»] scaffold0439 (1 HSPs)
scaffold0439 (235-284)||(3135-3184)
[»] scaffold0716 (1 HSPs)
scaffold0716 (234-266)||(4090-4122)
[»] scaffold0054 (1 HSPs)
scaffold0054 (234-286)||(66627-66679)
[»] scaffold0023 (1 HSPs)
scaffold0023 (234-266)||(18433-18465)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 26444655 - 26444584
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26444655 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 26444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 46739942 - 46739871
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||  || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46739942 ttgttgtttatgtgaaacattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 46739871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 35659525 - 35659455
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  35659525 tgttgtttatgtgaagcattgttaatgatgatttgaagttgaatgatgatttatagttggaagtatgtgaa 35659455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 19567235 - 19567304
Alignment:
Q  215 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  19567235 gttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 19567304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 12622136 - 12622069
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgt 281  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||    
T  12622136 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgt 12622069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 12622216 - 12622166
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  12622216 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 12622166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 21061360 - 21061317
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  21061360 atgagttgttaatgaagtattatatgaagaattattattattaa 21061317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 16027372 - 16027442
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| |  ||||||||||||||||||||   |||||||||||| |||||| ||||||||    
T  16027372 tgttgtttatgtgaagcaatgttaatgatgatttgaagttagctgatgatttatagttggaattatgtgaa 16027442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 35659425 - 35659355
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || || ||||||||||||||||||| | |||||||||| | | |||||||||||    
T  35659425 tgttgtttatgtgaagcattgtaaatgatgatttgaagttgaataatgatttatagtcgaaactatgtgaa 35659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 44024856 - 44024906
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44024856 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44024906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 15608128 - 15608085
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||    
T  15608128 atgagttattaatgaagtactatatgaagaattattgttattaa 15608085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 15098868 - 15098826
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattatta 377  Q
    |||||||||||| |||||||| ||||||| |||||||||||||    
T  15098868 atgagttgttaatgaagtactttatgaagtattattattatta 15098826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 38107038 - 38106996
Alignment:
Q  305 tgttgttatgatgattacatggtgttgcttatgagttgttaaa 347  Q
    ||||||||||||||||||||| |||||  ||||||||||||||    
T  38107038 tgttgttatgatgattacatgatgttgtctatgagttgttaaa 38106996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 50159846 - 50159809
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattat 375  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  50159846 agttgttaatgaagtattatatgaagaattattattat 50159809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 3484517 - 3484485
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  3484517 gttaatgatgattagaagttgattgatgattta 3484485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 21317011 - 21317110
Alignment:
Q  212 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21317011 attgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgctgttgtt 21317110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 21337002 - 21337100
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21337002 ttgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgttgttgtt 21337100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 1385016 - 1385087
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattgataatttatagttgaaactatgtgaa 1385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 1385117 - 1385187
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  1385117 tgttgtttatgtgaagcatcgttaatgatgatttgaagttaattgataatttatagttggaactatgtgaa 1385187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 10744580 - 10744630
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  10744580 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 10744630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 21367564 - 21367510
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttata 268  Q
    |||| ||||||| ||| || ||| |||||||||||||||||||||||||||||||    
T  21367564 tgttatttatgtgaagcattgttgatgatgatttgaagttgattgatgatttata 21367510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 10898272 - 10898307
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  10898272 ttaatgaagtactatatgaagaattattattattaa 10898307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 19357620 - 19357585
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  19357620 ttaatgaagtactatatgaagaattattattattaa 19357585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 1385016 - 1385061
Alignment:
Q  170 ttgttgtttatgtgaagtatcactaaagatgatttgaagttgattg 215  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattg 1385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 1385109 - 1385161
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||| |||| ||| |||||||||| ||||    
T  1385109 gttgtttatgttgtttatgtgaagcatcgttaatgatgatttgaagttaattg 1385161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 22689480 - 22689440
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattat 375  Q
    |||||||||||| |||||||| ||||||| |||||||||||    
T  22689480 atgagttgttaatgaagtactttatgaagtattattattat 22689440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 32215770 - 32215802
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  32215770 gttaatgatgattagaagttgattgatgattta 32215802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 17206901 - 17206804
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||   ||||| |||||| |||||||    
T  17206901 tgttgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattaattgttgttgtt 17206804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 17206811 - 17206740
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  17206811 ttgttgtttatgtgaagcatggtgaatgatgatttgaagttgattgatgatttatagttggagctatgtgaa 17206740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 24545420 - 24545350
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  24545420 tgttgtttatatgaagcattgttaatgatgatttgaagttgatttatgatttatagttggaactatgtgaa 24545350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24549327 - 24549397
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24549327 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24549397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24553953 - 24554023
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24553953 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24554023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24557012 - 24557082
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24557012 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24557082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 54331675 - 54331738
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatg 280  Q
    ||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||||||||    
T  54331675 tgtttatgtgaagcatggttaatgatgatttgaagttgaatgatgatttatagttggaactatg 54331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 13523755 - 13523807
Alignment:
Q  322 catggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13523755 catgatgttgtttaggagttgttaaagaagtattatatgaagaattattatta 13523807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 11191275 - 11191225
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  11191275 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 11191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 12860502 - 12860548
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||    
T  12860502 atgatgatttgaagttgattgatgatttatagttgaaattatgtgaa 12860548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 16180665 - 16180715
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  16180665 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 43890742 - 43890784
Alignment:
Q  336 tgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  43890742 tgagctgttaatgaagtactatatgaagaattattattattaa 43890784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 13521059 - 13521111
Alignment:
Q  322 catggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||||    
T  13521059 catgatgttgtttaggagttgttaaagaagtattatatgaagaaatattatta 13521111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 15024792 - 15024828
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaac 379  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15024792 ttaatgaagtactatatgaagaattattattattaac 15024828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 6806913 - 6806948
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  6806913 ttaatgaagtactatatgaagaattattattattaa 6806948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 11887765 - 11887808
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||    
T  11887765 atgagttattaatgaagtactatatgaagaattattataattaa 11887808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 35066055 - 35066090
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  35066055 ttaatgaagtactatatgaagaattattattattaa 35066090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 19574513 - 19574479
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattatta 377  Q
    |||| ||||||||||||||||||||||||||||||    
T  19574513 ttaatgaagtactatatgaagaattattattatta 19574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 19569743 - 19569772
Alignment:
Q  349 aagtactatatgaagaattattattattaa 378  Q
    ||||||||||||||||||||||||||||||    
T  19569743 aagtactatatgaagaattattattattaa 19569772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 20416952 - 20416911
Alignment:
Q  337 gagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||| |||| |||||||||| ||||||||||||||||||||    
T  20416952 gagttattaatgaagtactatgtgaagaattattattattaa 20416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 17206909 - 17206857
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  17206909 gttgtttatgttgtttatgtgaagcatggttaatgatgatttgaagttgattg 17206857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 46751781 - 46751741
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  46751781 agttgttaatgaagtattatatgaagaattattatgattaa 46751741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 579 - 651
Alignment:
Q  212 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  579 attgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 681 - 751
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  681 tgttgtttatgtgaagcattgttaattatgatttgaagttgattgatgatttatagttggaattatgtgaa 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 23492817 - 23492887
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23492817 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23492887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 23498415 - 23498485
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23498415 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23498485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 19958208 - 19958277
Alignment:
Q  215 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19958208 gttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatatttggaactatgtgaa 19958277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 22555946 - 22555875
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  22555946 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgattatttatagttggaactatgtgaa 22555875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 17104980 - 17104914
Alignment:
Q  308 tgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||| |||||||    
T  17104980 tgttatgatgattacatgatgttgtttaggagttgttaaagaagtattatatgaagaataattatta 17104914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 23492734 - 23492784
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23492734 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 23498332 - 23498382
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23498332 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23498382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 19657163 - 19657231
Alignment:
Q  306 gttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||||||||||||||||||| ||||| ||| || ||||||||||||||  ||||||| |||||||||||    
T  19657163 gttgttatgatgattacatgatgttgattaggaattgttaaagaagtatcatatgaataattattatta 19657231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 31736091 - 31736134
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  31736091 atgagttgttaatgaagtactatatgaagaattattattattaa 31736134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 15895621 - 15895580
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattattaac 379  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  15895621 agttgttaatgaagtattatatgaagaattattattattaac 15895580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 18260390 - 18260433
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  18260390 atgagttgttaatgaagtattatatgaagaattattattgttaa 18260433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 19774653 - 19774688
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  19774653 ttaatgaagtactatatgaagaattattattattaa 19774688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 22212759 - 22212828
Alignment:
Q  307 ttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| ||||||||||| || | ||| |||||||||||| | ||||||||||||| |||||||||||||||||    
T  22212759 ttgtcatgatgattacttgatattg-ttatgagttgttgatgaagtactatatg-agaattattattattaa 22212828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 22804899 - 22804864
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  22804899 ttaatgaagtactatatgaagaattattattattaa 22804864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 23083537 - 23083580
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||  |||||| ||||||||||||||||||||||||    
T  23083537 atgagttgttactgaagtattatatgaagaattattattattaa 23083580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 23492809 - 23492861
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  23492809 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 23492861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 23498407 - 23498459
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  23498407 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 23498459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 23991930 - 23991898
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  23991930 gttaatgatgattagaagttgattgatgattta 23991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 34962793 - 34962761
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  34962793 gttaatgatgattagaagttgattgatgattta 34962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 44891388 - 44891318
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44891388 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 44891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 41230458 - 41230389
Alignment:
Q  305 tgttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||| || |||||||||||||||||    
T  41230458 tgttgttatgatgattacatgatgttgtttatgagttgataaagaagtattacatgaagaattattatta 41230389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 17904357 - 17904427
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||| |||| ||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17904357 tgttgttaatgtgaagcatggttaatgatgatttgaagtcgattgatgatttatagttggaactatgtgaa 17904427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24721121 - 24721191
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||  ||||||||||||||||||| |||||||||||||| || ||| ||||||||    
T  24721121 tgttgtttatgtgaagcattattaatgatgatttgaagttaattgatgatttatagttagaattatgtgaa 24721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 45473922 - 45473852
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||  ||||| |||||||||||||| |||||| ||||||||    
T  45473922 tgttgtttatgtgaagcattgttaatgatgattcaaagttaattgatgatttatagttggaattatgtgaa 45473852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 6833033 - 6832986
Alignment:
Q  237 aatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  6833033 aatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 6832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 44891298 - 44891227
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||  |  || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44891298 ttgttgtttatgtggaccattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44891227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 21238575 - 21238532
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||| |||||||||||||||| |||||||||    
T  21238575 atgagttgttaatgaagaactatatgaagaattaatattattaa 21238532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 22349198 - 22349163
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  22349198 ttaatgaagtactatatgaagaattattattattaa 22349163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 24724054 - 24724089
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  24724054 ttaatgaagtactatatgaagaattattattattaa 24724089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 42696553 - 42696510
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||    
T  42696553 atgagttattaatgaagtagtatatgaagaattattattattaa 42696510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 45754303 - 45754261
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattatta 377  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||    
T  45754303 atgagttgttaatgaattactatatggagaattattattatta 45754261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 12709875 - 12709839
Alignment:
Q  249 aagttgattgatgatttataattggaactatgtgaaa 285  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  12709875 aagttaattgatgatttataattggaattatgtgaaa 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 14239064 - 14239096
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  14239064 gttaatgatgattagaagttgattgatgattta 14239096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 44891396 - 44891344
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  44891396 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 44891344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 63744 - 63813
Alignment:
Q  305 tgttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  63744 tgttgttatgatgattacatgatgttgtttaggagttgttaaagaagtattatatgaagaattattatta 63813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 198791 - 198859
Alignment:
Q  306 gttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  198791 gttgttatgatgattacatgatgttgtttaggagttgttaaagaagtattatatgaagaattattatta 198859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 26646438 - 26646366
Alignment:
Q  216 ttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatat 288  Q
    |||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26646438 ttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttatagttggaactatgtgaaatat 26646366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 6551786 - 6551857
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||  || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551786 ttgttgtttatgtgaaacatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 6551916 - 6551983
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551916 tgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 12354922 - 12354851
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    |||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  12354922 tgttgtttatgtgaagcattgttattgatgatttgaagttgattgatgatttatagttggaattatgtgaaa 12354851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 14027168 - 14027218
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  14027168 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 14027218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 25251111 - 25251154
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  25251111 atgagttgttaatgaattactatatgaagaattattattattaa 25251154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 25314896 - 25314939
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  25314896 atgagttgttaatgaattactatatgaagaattattattattaa 25314939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 25742684 - 25742641
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  25742684 atgagttgttaatgaagtattatatgaagaattattattattaa 25742641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 8834459 - 8834514
Alignment:
Q  220 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaa 275  Q
    |||||| ||| || |||||||||||||||||||| ||||||||| |||| ||||||    
T  8834459 ttatgtgaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaa 8834514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 16226636 - 16226601
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  16226636 ttaatgaagtactatatgaagaattattattattaa 16226601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 20565059 - 20565024
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  20565059 ttaatgaagtactatatgaagaattattattattaa 20565024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 8505025 - 8505075
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| |||||| ||||||||| |||| ||| |||||||||||    
T  8505025 gttaatgatgattcgaagttaattgatgatgtatagttgaaactatgtgaa 8505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 19129 - 19200
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  19129 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactaagtgaa 19200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 61518 - 61447
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  61518 ttgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaactatgtgaa 61447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 39669 - 39599
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39669 tgttgtttatgtgaagcattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 39599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 39569 - 39499
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  39569 tgttgtttatgtgaagcattgttaatgaagatttgaagttgattgatgatttatagttggaactatatgaa 39499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 20094 - 20161
Alignment:
Q  307 ttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    |||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  20094 ttgttatgctgattacatgatgttgtttaggagttgttaaagaagtattatatgaagaattattatta 20161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 8221 - 8291
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  8221 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttattgtttgaactatgtgaa 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 4940 - 4905
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  4940 ttaatgaagtactatatgaagaattattattattaa 4905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 8213 - 8265
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  8213 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 8265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 2718068 - 2718138
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  2718068 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 2718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 36733872 - 36733942
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  36733872 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 36733942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 5759905 - 5759837
Alignment:
Q  306 gttgttatgatgattacatggtgttgcttatgagttgttaaagaagtactatatgaagaattattatta 374  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||| || |||||||| |||||||||||    
T  5759905 gttgttacgatgattacatgatgttgtttatgagttgttaaagaaatattatatgaaaaattattatta 5759837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 22473180 - 22473109
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  22473180 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaaa 22473109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 22473280 - 22473210
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  22473280 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 22473210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 6574350 - 6574414
Alignment:
Q  220 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  6574350 ttatgtaaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 6574414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 18820422 - 18820489
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| | ||||||| |||||||    
T  18820422 tgtttatgtgaagcattgttaatgatgattttaagttgattgatgatttacagttggaacaatgtgaa 18820489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 23947112 - 23947069
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  23947112 atgagttgttaatgaagtactatatgaagaattattattattaa 23947069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 36406297 - 36406368
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||| || ||||||||||||||  ||||| ||||||||    
T  36406297 ttgttgtttatgtgaagcattgttaatgatgatttgaaattaattgatgatttatagatggaattatgtgaa 36406368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 18820339 - 18820389
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  18820339 gttaatgatgatttaaagttgattgatgaattatagttggaactatgtgaa 18820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 17908148 - 17908192
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaac 379  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  17908148 atgagtggttaatgaagtactatatgaagaattattattattaac 17908192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 17217419 - 17217376
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  17217419 atgagttgttaatggagtactatatgaagaattattattattaa 17217376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 22244237 - 22244194
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  22244237 atgagttgttaatgaagtactatatgaagtattattattattaa 22244194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 23888558 - 23888515
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  23888558 atgagttgttaatgaagtattatatgaagaattattattattaa 23888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 22238711 - 22238746
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  22238711 ttaatgaagtactatatgaagaattattattattaa 22238746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 22584958 - 22584993
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  22584958 ttaatgaagtactatatgaagaattattattattaa 22584993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 39696067 - 39696102
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  39696067 ttaatgaagtactatatgaagaattattattattaa 39696102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 42267044 - 42267079
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  42267044 ttaatgaagtactatatgaagaattattattattaa 42267079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 13665683 - 13665723
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  13665683 agttgttaatgaagtattatacgaagaattattattattaa 13665723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 13724958 - 13724998
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  13724958 agttgttaatgaagtattatacgaagaattattattattaa 13724998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 16414120 - 16414152
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  16414120 gttaatgatgattagaagttgattgatgattta 16414152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 32121155 - 32121123
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  32121155 gttaatgatgattagaagttgattgatgattta 32121123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 9744447 - 9744518
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || | |||||||||||||||||| | |||||||||||| |||||||||||||||    
T  9744447 ttgttgtttatgtgaagcattgctaatgatgatttgaagttaaatgatgatttatagttggaactatgtgaa 9744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 9744357 - 9744427
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||   |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgattaatgatttatagttggaactatgtgaa 9744427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 15577259 - 15577329
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||| ||||| |||||||||||||| ||| || ||||||||    
T  15577259 tgttgtttatgtgaagcattgttaatgatgatttaaagttaattgatgatttatagttgaaattatgtgaa 15577329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 15281094 - 15281051
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||| |||||| |||||||||||||||||||||||||||||||    
T  15281094 atgagctgttaatgaagtactatatgaagaattattattattaa 15281051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 13134276 - 13134326
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  13134276 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 13134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 20253970 - 20254015
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtga 283  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||    
T  20253970 atgatgatttgaagttgattgatgatttatagtttgaattatgtga 20254015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 11053480 - 11053440
Alignment:
Q  337 gagttgttaaagaagtactatatgaagaattattattatta 377  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  11053480 gagttgttaatgaagtactatatgaataattattattatta 11053440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 9744357 - 9744400
Alignment:
Q  171 tgttgtttatgtgaagtatcactaaagatgatttgaagttgatt 214  Q
    |||||||||||||||| || ||||| ||||||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgatt 9744400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 14220462 - 14220497
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  14220462 ttaatgaagtactatatgaagaattattattattaa 14220497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 14257397 - 14257362
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  14257397 ttaaggaagtactatatgaagaattattattattaa 14257362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 16578777 - 16578742
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  16578777 ttaatgaagtactatatgaagaattattattattaa 16578742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 16581525 - 16581490
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  16581525 ttaatgaagtactatatgaagaattattattattaa 16581490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 16586885 - 16586920
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  16586885 ttaatgaagtactatatgaagaattattattattaa 16586920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 17130960 - 17131003
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  17130960 atgagttgttaatgaattactacatgaagaattattattattaa 17131003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 32300328 - 32300293
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  32300328 ttaatgaagtactatatgaagaattattattattaa 32300293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 47093771 - 47093736
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  47093771 ttaatgaagtactatatgaagaattattattattaa 47093736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 33000794 - 33000752
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattatta 377  Q
    ||||||| ||||  |||||||||||||||||||||||||||||    
T  33000794 atgagttattaataaagtactatatgaagaattattattatta 33000752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 4070553 - 4070524
Alignment:
Q  349 aagtactatatgaagaattattattattaa 378  Q
    ||||||||||||||||||||||||||||||    
T  4070553 aagtactatatgaagaattattattattaa 4070524  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 9390262 - 9390302
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattat 375  Q
    |||||||||||| |||||||| ||||||| |||||||||||    
T  9390262 atgagttgttaatgaagtactttatgaagtattattattat 9390302  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 16075920 - 16075876
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaac 379  Q
    |||||||||||| |||| |||||||||||||||  ||||||||||    
T  16075920 atgagttgttaatgaagaactatatgaagaattgatattattaac 16075876  T

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Target: scaffold0453 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 6012 - 6058
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  6012 atgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6058  T

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Target: scaffold0213 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 17924 - 17854
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| |||  | |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  17924 tgttgtttatgtgaagctttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 17854  T

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Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 127637 - 127680
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  127637 atgagttgttaatgaagtactatatgaagaattattattattaa 127680  T

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Target: scaffold0628 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 4850 - 4918
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttg-attgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || |||||||| |||||||||||| |||||||||||||| |||||||| ||||||    
T  4850 tgtttatgtgaagcattgttaatgaagatttgaagttgaattgatgatttatagttggaactttgtgaa 4918  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 11924 - 11967
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| |||||||||||||||||||||||||||||||    
T  11924 atgagttattaatgaagtactatatgaagaattattattattaa 11967  T

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Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 7833 - 7790
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||    
T  7833 atgagttattaatgaagtactatatgaagaattattgttattaa 7790  T

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Target: scaffold0877 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 3591 - 3659
Alignment:
Q  307 ttgttatgatgattacatggtgttgcttatgagttgttaaagaagta-ctatatgaagaattattatta 374  Q
    ||||||||| ||||| ||| |||||  |||||||||||| |||||||  ||||||||||||||||||||    
T  3591 ttgttatgacgattatatgatgttgtctatgagttgttagagaagtatttatatgaagaattattatta 3659  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 54705 - 54665
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  54705 agttgttaatgaagtattatatgaagaattattattattaa 54665  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 3183 - 3226
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||| |||||||||||||||| |||||||||    
T  3183 atgagttgttaatgaagaactatatgaagaattaatattattaa 3226  T

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Target: scaffold0331 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 13333 - 13372
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattatta 377  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  13333 agttgttaatgaagtattatatgaagaattattattatta 13372  T

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Target: scaffold0331; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 13533 - 13572
Alignment:
Q  338 agttgttaaagaagtactatatgaagaattattattatta 377  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  13533 agttgttaatgaagtattatatgaagaattattattatta 13572  T

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Target: scaffold0285 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 22457 - 22422
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  22457 ttaatgaagtactatatgaagaattattattattaa 22422  T

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Target: scaffold0227 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 27643 - 27600
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||| |||||||||||||||| |||||||||    
T  27643 atgagttgttaatgaagaactatatgaagaattaatattattaa 27600  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 17270 - 17227
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||    
T  17270 atgagttattaatgaagtactatatgaagaattattataattaa 17227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 24003 - 23960
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||||| |||||||||||| |||||||||    
T  24003 atgagttgttaatgaagtactttatgaagaattactattattaa 23960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 33594 - 33543
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    |||||||||||||||||||| | ||||||| |||| |||||| |||||||||    
T  33594 gttaatgatgatttgaagttaaatgatgatgtatagttggaattatgtgaaa 33543  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 29120 - 29085
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  29120 ttaatgaagtactatatgaagaattattattattaa 29085  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 28113 - 28070
Alignment:
Q  335 atgagttgttaaagaagtactatatgaagaattattattattaa 378  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||    
T  28113 atgagttgttaatgaagtattatatgaaggattattattattaa 28070  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 23362 - 23327
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattattaa 378  Q
    |||| |||||||||||||||||||||||||||||||    
T  23362 ttaatgaagtactatatgaagaattattattattaa 23327  T

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Target: scaffold0241 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 1047 - 1013
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattatta 377  Q
    |||| ||||||||||||||||||||||||||||||    
T  1047 ttaatgaagtactatatgaagaattattattatta 1013  T

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Target: scaffold0241; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 378
Target Start/End: Complemental strand, 4548 - 4518
Alignment:
Q  348 gaagtactatatgaagaattattattattaa 378  Q
    |||||||||||||||||||||||||||||||    
T  4548 gaagtactatatgaagaattattattattaa 4518  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 13028 - 12994
Alignment:
Q  343 ttaaagaagtactatatgaagaattattattatta 377  Q
    |||| ||||||||||||||||||||||||||||||    
T  13028 ttaatgaagtactatatgaagaattattattatta 12994  T

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Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 3184 - 3135
Alignment:
Q  235 ttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| |||||| ||||||||| |||| |||||| ||||||||    
T  3184 ttaatgatgattcgaagttaattgatgatgtatagttggaattatgtgaa 3135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 4122 - 4090
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  4122 gttaatgatgattagaagttgattgatgattta 4090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 66627 - 66679
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaat 286  Q
    |||||| ||||||||||||| |||||||||  ||| |||||| ||||||||||    
T  66627 gttaataatgatttgaagttaattgatgatgcatagttggaattatgtgaaat 66679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 18433 - 18465
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  18433 gttaatgatgattagaagttgattgatgattta 18465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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