View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731-Insertion-11 (Length: 225)
Name: NF4731-Insertion-11
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731-Insertion-11 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 53422744 - 53422527
Alignment:
| Q |
8 |
aatgtgattagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccag |
107 |
Q |
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| T |
53422744 |
aatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggggtgaaagtccaattgattccag |
53422645 |
T |
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| Q |
108 |
agaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctacactttaatcccgctgaacgatgatctctttggatccattac |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53422644 |
agaaactccaatttacaaaaagtagcaaaaaaataagctaccaagttattttctcctacactttaatcccgctgaacgatgatctctttggatccattac |
53422545 |
T |
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| Q |
208 |
atggagaaatgataaata |
225 |
Q |
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|||||||||||||||||| |
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| T |
53422544 |
atggagaaatgataaata |
53422527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 53430699 - 53430493
Alignment:
| Q |
16 |
tagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccagagaaactc |
115 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53430699 |
tagaactgttacaaacgtcggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggggtgaaagtccaattgattccagagaaactc |
53430600 |
T |
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| Q |
116 |
caatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctacactttaatcccgctgaacgatgatctctttggatccattacatggagaa |
215 |
Q |
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| T |
53430599 |
caatttacaaaaagtagcaatagaataagctaccaagttatcttctc---caatttaacctcgctaaaggaagatctatttggatccattacatggagaa |
53430503 |
T |
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| Q |
216 |
atgataaata |
225 |
Q |
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|||||||||| |
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| T |
53430502 |
atgataaata |
53430493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 48375109 - 48375314
Alignment:
| Q |
8 |
aatgtgattagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccag |
107 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||||| || |||||| ||||| ||| ||||||||||||| |||||||| || ||||||||| |
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| T |
48375109 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtgaaagttcagctgattccag |
48375208 |
T |
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| Q |
108 |
agaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctac-actttaatcccgctgaacgatgatctctttggatccatta |
206 |
Q |
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| T |
48375209 |
agaaactacaattcacaaaaagcaataaaaaacaaagctaccaagctattttct-ctactactttaacctcgttgaaggaagatctgtttggatccatta |
48375307 |
T |
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| Q |
207 |
catggag |
213 |
Q |
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||||||| |
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| T |
48375308 |
catggag |
48375314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 26095086 - 26094938
Alignment:
| Q |
16 |
tagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccagagaaactc |
115 |
Q |
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||||| ||||||||| || ||||||||||| |||| ||||||||| ||| |||| ||||||| ||||| ||||||||||| |||||||| ||||| || |
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| T |
26095086 |
tagaattgttacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgtcaatgctccgagtggggtgaaagtccagttgattccggagaagctt |
26094987 |
T |
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| Q |
116 |
caatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcct |
164 |
Q |
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| T |
26094986 |
caatttacaaaaagaagcaaaaaacaaagctatcaagttattttctcct |
26094938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 53307547 - 53307443
Alignment:
| Q |
8 |
aatgtgattagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccag |
107 |
Q |
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||||||| |||| ||| ||||| || |||||||||||||||| ||||||| |||||||| |||||||| | ||| |||||| ||||||||||||||| |
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| T |
53307547 |
aatgtgagcagaattgtcacaaaagtcggtgaagaggatgaaatagtctacatggccatcgtcgatgctcccaatggggtgaaaatccaattgattccag |
53307448 |
T |
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| Q |
108 |
agaaa |
112 |
Q |
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| T |
53307447 |
agaaa |
53307443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 53319607 - 53319436
Alignment:
| Q |
56 |
tactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagtta |
155 |
Q |
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|||||| |||| |||||||||| | || ||||||||| | ||||||||||| ||||| ||||||||| ||| |||| ||||||||||| ||| |
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| T |
53319607 |
tactcctccattattgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactaagctaccaaatta |
53319508 |
T |
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| Q |
156 |
ttttctcct--acactttaatcccgctgaacgatgatctctttggatccattacatggagaaatgataaata |
225 |
Q |
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||||||||| ||||||||| | | |||| || ||| | |||||||||||||||||||| |||| |||||| |
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| T |
53319507 |
ttttctcctccacactttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaata |
53319436 |
T |
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