View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731-Insertion-2 (Length: 1023)
Name: NF4731-Insertion-2
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 951; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 951; E-Value: 0
Query Start/End: Original strand, 8 - 1023
Target Start/End: Complemental strand, 27027895 - 27026881
Alignment:
| Q |
8 |
gatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagcatccatagataatgtgggactac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027895 |
gatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagcatccatagataatgtgggactac |
27027796 |
T |
|
| Q |
108 |
atgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgggaagagcaaagggtttggttatatccagtttgattcaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027795 |
atgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgggaagagcaaagggtttggttatatccagtttgattcaga |
27027696 |
T |
|
| Q |
208 |
ggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatgtatgtgaaattattttagcgcttgttaaaatttgccgtc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027695 |
ggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatgtatgtgaaattattttagcgcttgttaaaatttgccgtc |
27027596 |
T |
|
| Q |
308 |
attgatatccatatatgttgtgatttgaagtctatgnnnnnnnnngccttcagttaattgctgtttttgttatcctaagattggttttaatctgattcca |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027595 |
attgatatccatatatgttgtgatttgaagtctatgtttttttt-gccttcagttaattgctgtttttgttatcctaagattggttttaatctgattcca |
27027497 |
T |
|
| Q |
408 |
attcttctcacagatatgttgggaaatttatcagaaaaagtgagcgctctcttcctgacctggatgccaaatttacaaacttgtacgttaagaatttgga |
507 |
Q |
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| T |
27027496 |
attcttctcacagatatgttgggaaatttatcagaaaaagtgagcgctctcttcctgacctggatgccaaatttacaaacttgtacgttaagaatttgga |
27027397 |
T |
|
| Q |
508 |
cccagttgttactgaaaagcatcttggagaaaagttctcctcttttgggaaaatttttagcttggctattaaaaaggatgagaatgggcagtcaaaaggc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027396 |
cccagttgttactgaaaagcatcttggagaaaagttctcctcttttggaaaaattgttagcttggctattaaaaaggatgagaatgggcagtcaaaaggc |
27027297 |
T |
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| Q |
608 |
ttcggatttgttaactatgacagcccagatgatgctagacgagcaatggaagcaatggatggatcacagtttggtaatttatttaactttttagcatata |
707 |
Q |
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| T |
27027296 |
ttcggatttgttaactatgacagcccagatgatgctagacgagcaatggaagcaatggatggatcacagtttggtaatttatttaactttttagcatata |
27027197 |
T |
|
| Q |
708 |
gatattttctgcacaaaattgcactttcctggatgttgattctctgcttaaatctggttttgatttgtcataagtaggttcaaagatcttgtatgttgca |
807 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027196 |
gatattttctgcacaaaattgcactttccaggatgttgattctctgcttaaatctggttttgatttgtcataagtaggttcaaagatcttgtatgttgca |
27027097 |
T |
|
| Q |
808 |
agagcacnnnnnnnggttgaacgtgagcagatattgcatcatttgtttgtggaaaaaggcttgaaacacatggtaattccatgccctttctcctatatat |
907 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027096 |
agagcacaaaaaaaggttgaacgtgagcagatattgcatcatttgtttgtggaaaaaggcttgaaacacatggtaattccatgccctttctcctatatat |
27026997 |
T |
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| Q |
908 |
agttgaataattaatttcagctttcttagtatgtcactgtttaactttcagggatcaaacatttatgtgaagaacattgataccagtgttggcgatgaag |
1007 |
Q |
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| T |
27026996 |
agttgaataattaatttcagctttcttagtatgtcactgtttaactttcagggatcaaacatttatgtgaagaacattgataccagtgttggcgatgaag |
27026897 |
T |
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| Q |
1008 |
aactacgggaccattt |
1023 |
Q |
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| T |
27026896 |
aactacgggaccattt |
27026881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 880 - 988
Target Start/End: Complemental strand, 4574255 - 4574148
Alignment:
| Q |
880 |
gtaattccatgccctttctcctatatatagttgaataattaatttcagctttcttagtatgtcactgtttaactttcagggatcaaacatttatgtgaag |
979 |
Q |
| |
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|||||| ||||||||||| || ||| |||||||| ||| |||||||| |||||||||||||||| | || | | |||||||||||||||| ||||||| |
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| T |
4574255 |
gtaatttcatgccctttcaccaatagatagttgactaactaatttcaactttcttagtatgtca-tcattgaagtacagggatcaaacatttttgtgaag |
4574157 |
T |
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| Q |
980 |
aacattgat |
988 |
Q |
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| T |
4574156 |
aacattgat |
4574148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 869 - 972
Target Start/End: Original strand, 36015184 - 36015288
Alignment:
| Q |
869 |
tgaaacacatggtaattccatgccctttctcctatatatagttgaataattaatttcagctttcttagtatgtcactgtttaa-ctttcagggatcaaac |
967 |
Q |
| |
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||||| ||| |||||| ||||||||||| || |||||||||||| ||| |||||| | ||||||||||||||||| || || ||||||||||||||| |
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| T |
36015184 |
tgaaatacaaggtaatatcatgccctttcaccaatatatagttgactaactaatttaaactttcttagtatgtcaccattaaagttttcagggatcaaac |
36015283 |
T |
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| Q |
968 |
attta |
972 |
Q |
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||||| |
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| T |
36015284 |
attta |
36015288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 17000046 - 17000004
Alignment:
| Q |
377 |
ttatcctaagattggttttaatctgattccaattcttctcaca |
419 |
Q |
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| T |
17000046 |
ttatcctaagattcgttttaatctaattccaattcttctcaca |
17000004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 712 - 750
Target Start/End: Complemental strand, 16999882 - 16999844
Alignment:
| Q |
712 |
ttttctgcacaaaattgcactttcctggatgttgattct |
750 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||| |
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| T |
16999882 |
ttttgtgcacaaaattgtactttcctggatgttgattct |
16999844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 943
Target Start/End: Original strand, 11761985 - 11762060
Alignment:
| Q |
868 |
ttgaaacacatggtaattccatgccctttctcctatatatagttgaataattaatttcagctttcttagtatgtca |
943 |
Q |
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| T |
11761985 |
ttgaaatacaaggcaatttcatgccctttcaccaatagatagttgactcactaatttcaactttcttagtatgtca |
11762060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 988
Target Start/End: Original strand, 41654047 - 41654088
Alignment:
| Q |
947 |
tttaactttcagggatcaaacatttatgtgaagaacattgat |
988 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
41654047 |
tttaacttccaggggtcaaacatttatgtgaagaatattgat |
41654088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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