View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731-Insertion-3 (Length: 1023)
Name: NF4731-Insertion-3
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 769; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 46 - 1002
Target Start/End: Complemental strand, 43571467 - 43570515
Alignment:
| Q |
46 |
tcaaaaacaaccaaatatatcataatcaattctacatctacgaaattaagttcggtccctctagaattggaatcaaacatacatttagattctttaaaga |
145 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
43571467 |
tcaaaaacaaccaaatatatcataattaattctacatctacgaaattaagttcggtccctctagaattggaaccaaacatacatttagattttttaaaga |
43571368 |
T |
|
| Q |
146 |
aggagatatttacaataataggtaccggttccgatgatcatagctcaattgattgagacaatgcattagcacgttcaaactttgaacatctcatttattc |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
43571367 |
aggagatatttacaataataggtatcggttccgatgagcatagctcaattgattgagacaatacattagcaggttcaaaccttgaacatctcatttattc |
43571268 |
T |
|
| Q |
246 |
actttgaattctaacgggtaactacttnnnnnnnnnnnnnnnnnnnnnncaataaaaggtatcgatttcatgtttgtgccaaattcatgagaaaggtaaa |
345 |
Q |
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| T |
43571267 |
actttgaattctaaccggtaactacttgaaaaagaaaagaaaaaaaa--caataaaaggtatcgatttcatgtttgtgccaaattcatgagaaaggtaaa |
43571170 |
T |
|
| Q |
346 |
acnnnnnnnngacaaatgagaaaggtaaaactgtttagtggagtatgtggtagtaattaaaagtttctgtaaagtaatatttccaattgtgcttgactca |
445 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571169 |
acttttttttgacaaatgagaaaggtaaaactgtttagtggagtatgtggtagtaattaaaagtttctgtaaagtaatatttccaattgtgcttgactca |
43571070 |
T |
|
| Q |
446 |
ttattttaaggacatgccaattgctggccaaatttagatcggattttactccaagattgattatagtgagcaaaatgaatggcttccgacactttcgatt |
545 |
Q |
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| T |
43571069 |
ttattttaaggacatgccaattgctggccaaatttagatcggattttactccaagattgattatagtgagcaaaatgaatggcttccaacactttcgatt |
43570970 |
T |
|
| Q |
546 |
tagatgaaaatgaagaaaatgtgaaaaagtcctagcctcatttgtcttcggattataaataaatttatagtgatgggaccttaacacacactattctctc |
645 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43570969 |
tagatgaaaatgaagaaaatgtgaaaaagtcctagcctcatttgtcttcggattataaataaatttatagtgatgggaccttaacacacactattctctc |
43570870 |
T |
|
| Q |
646 |
ataattccacttgaaatattttgaacaataagaataaatctagtttgaaattgcatgaaaatgtggtttacttttaattatcttccatgtattccaattc |
745 |
Q |
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| T |
43570869 |
ataattccacttgaaatattttgaacaataagaataaatctagtttgaaattgcatgaaaatgtggtttacttttaattatcttccatgtattccaattc |
43570770 |
T |
|
| Q |
746 |
caaccatcatgtactgtcacaaaccacactgatttgttaaaacaagatcatagcttttctattgataaaattggtgttaaacaacagtgctcttcttatt |
845 |
Q |
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| T |
43570769 |
caaccatcatgta-----acaaaccacactgatttgttaaaacaagatcatagcttttctattgataaaattggtgttaaacaacagtgctcttcttatt |
43570675 |
T |
|
| Q |
846 |
attatatttcttttccacacatttcacatatgtttattcaaccaaacatatgcttagtgatgagattttcagcaacaaagtatgtatttgaattcggcta |
945 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
43570674 |
attatatttcttttccacacatttcacatatgtttattcaaccaaacatatgcttagtgatgagattttcagcaacaaagtatttatttgaatttggcta |
43570575 |
T |
|
| Q |
946 |
caaa-taatcatctatacaacggta-cgatgcc-agtaaggcagccacccaaacggtcta |
1002 |
Q |
| |
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|||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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|
| T |
43570574 |
caaattaatcatctatacaacggtaccaatgccaagtaaggcagccacccaaacggtcta |
43570515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 884 - 949
Target Start/End: Complemental strand, 43569927 - 43569862
Alignment:
| Q |
884 |
caaccaaacatatgcttagtgatgagattttcagcaacaaagtatgtatttgaattcggctacaaa |
949 |
Q |
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| T |
43569927 |
caaccaaacatatgattagtgatgagattttcaactacaaaatatatatttgaatttggctacaaa |
43569862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 28083960 - 28084033
Alignment:
| Q |
8 |
tcaagtataatcaatttcagagacaaaatcagtttaagtcaaaaacaaccaaatatatcataatcaattctaca |
81 |
Q |
| |
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||||||| |||||||| | ||||||||||| || | || ||||||||||||||| ||| ||||||||||||| |
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| T |
28083960 |
tcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattctaca |
28084033 |
T |
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