View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731-Insertion-4 (Length: 995)

Name: NF4731-Insertion-4
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731-Insertion-4
NF4731-Insertion-4
[»] chr5 (8 HSPs)
chr5 (599-981)||(3640677-3641064)
chr5 (190-508)||(3641074-3641400)
chr5 (8-190)||(3641452-3641634)
chr5 (688-876)||(16085193-16085384)
chr5 (639-836)||(3627820-3628014)
chr5 (688-844)||(16088116-16088271)
chr5 (699-832)||(14837182-14837315)
chr5 (299-400)||(3644114-3644215)
[»] chr1 (3 HSPs)
chr1 (637-876)||(19033698-19033941)
chr1 (639-845)||(38968427-38968633)
chr1 (705-845)||(28830745-28830885)
[»] chr8 (3 HSPs)
chr8 (643-835)||(38643686-38643879)
chr8 (711-836)||(8263371-8263496)
chr8 (753-835)||(32791781-32791863)
[»] chr4 (3 HSPs)
chr4 (645-845)||(22462307-22462508)
chr4 (645-835)||(14058935-14059126)
chr4 (711-835)||(23544572-23544696)
[»] chr6 (1 HSPs)
chr6 (637-835)||(19229589-19229784)
[»] chr7 (3 HSPs)
chr7 (643-836)||(47204816-47205010)
chr7 (756-835)||(47204730-47204809)
chr7 (688-873)||(8360110-8360296)
[»] chr2 (4 HSPs)
chr2 (637-835)||(26973381-26973579)
chr2 (637-835)||(7505022-7505220)
chr2 (688-835)||(26968905-26969052)
chr2 (641-845)||(17364665-17364867)
[»] chr3 (3 HSPs)
chr3 (712-835)||(53726830-53726953)
chr3 (711-835)||(53731311-53731435)
chr3 (688-845)||(42871932-42872089)
[»] scaffold0427 (1 HSPs)
scaffold0427 (640-836)||(5684-5880)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 599 - 981
Target Start/End: Complemental strand, 3641064 - 3640677
Alignment:
Q  599 ttgttgtattttatgcgtcggtaatattgatttgtacggcagcaaccgcaacttcaaataacaacgaactagatttggaagatgaaccggaaagtaaacc 698  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3641064 ttgttgtattttatgcgtcggtaatattgatttgtacgatagcaaccgcaacttcaaacaacaacgaactagatttggaagatgaaccggaaagtaaacc 3640965  T
Q  699 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggt 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  3640964 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatcctcctcaatatgcgcaaactccccaggattcaacaggt 3640865  T
Q  799 acttctcctagttatggaggtaacagagcaacaagaatcacaaatttttatcatgatgttttcctcaggaagtaaaatggagaagaaaacaaattttctt 898  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3640864 acttatcctagttatggaggtaacagagcaacaagaatcacaaatttctatcatgatgttttcctcaggaagtaaaatggagaagaaaacaaagtttctt 3640765  T
Q  899 a--tgtgttttgggagtacgtgtattttcatg-tatgtatcttgtg-tactgattgc-agaatatacagtcatgaacgtattttccaa 981  Q
    |  | ||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  3640764 atttctgttttgggagtacgtgtattttcatgttatgtatcttgtgttaccgattgcaagaatatacagtcatgaacgtattttccaa 3640677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 190 - 508
Target Start/End: Complemental strand, 3641400 - 3641074
Alignment:
Q  190 ttttctgtaattttctgtaatgtattggcagcttttgtgtggatgaagttgcacaactttttgaactatgcatttttcctttgcttcatcaataatggca 289  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3641400 ttttctgtaattttctgtaatgtattggcagctgttgtgtggatgaagttgcacaactttttgaactatgcatttttcctttgcttcatcaataatggca 3641301  T
Q  290 cttcttcaactgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattga 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3641300 cttcttcaactgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattga 3641201  T
Q  390 gata--------atgacatagcaatttattagtgtaaactcatttcaaattacaagtgttttacccatcaaagttggaaagaaagttctagtagttcaaa 481  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3641200 gataatgagttaatgacatagcaatttattagtgtaaactcatttcaaattacaagtgttttacccatcaaagttggaaagaaagttcgagtagttcaaa 3641101  T
Q  482 gtagagtttggctatgctggctgacat 508  Q
    |||||||||||||||||||||||||||    
T  3641100 gtagagtttggctatgctggctgacat 3641074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 3641634 - 3641452
Alignment:
Q  8 caagcagtttcggtaacattttttacccacatatcttattgtatagatatttatatttgtaattagatatatttgtaaagcatgtacgctgacattgtaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3641634 caagcagtttcggtaacattttttacccacatatcttattgtatagatatttatatttgtaattagatatatttgtcaagcatgtacgctgacattgtaa 3641535  T
Q  108 agannnnnnnagcaaccttagacaatgccgcgatcaaggacctagaatgtactggtggaatcatgaagataaataagtgaaat 190  Q
    |||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3641534 agatttttttagcaaccttagacaatgccgcgatcaaggacccagaatgtactggtggaatcatgaagataaataagtgaaat 3641452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 688 - 876
Target Start/End: Original strand, 16085193 - 16085384
Alignment:
Q  688 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatg 787  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| | ||||||||||||| |    
T  16085193 gaaagtaaacctgcaacattgaacacgttagtattaacctcaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaactccccagg 16085292  T
Q  788 attcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcacaaatttttatcatg---atgttttcctcaggaagtaaaat 876  Q
    |  || ||||| ||||||||||| |||||||||||| | || |||||||||| |||| |||||| |   ||||||| ||||| |||||||||    
T  16085293 acacagcaggtccttctcctagtgatggaggtaacaaaacagcaagaatcaccaattattatcaggcatatgtttttctcagaaagtaaaat 16085384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 639 - 836
Target Start/End: Original strand, 3627820 - 3628014
Alignment:
Q  639 agcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcac 737  Q
    ||||||||||||||||||||||||||||| | ||| || || |  |||  ||||||||||||| || ||    ||||||||||||||| ||||||||||     
T  3627820 agcaaccgcaacttcaaataacaacgaaccaaattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacttgaggcgtcag 3627915  T
Q  738 gaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaat 836  Q
    ||  |||||||||||||||||||| | ||||| ||||||||||| ||| |||||||||||| ||||||| |||||||||||| ||||| || |||||||    
T  3627916 gaatactgtccttggaatttatccgcttcaatgtgcgcaaactctccaggattcaacaggtccttctccaagttatggaggttacagaacagcaagaat 3628014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 688 - 844
Target Start/End: Original strand, 16088116 - 16088271
Alignment:
Q  688 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatg 787  Q
    |||||||||||||||| |||||||||||||||||||||||  || ||||||| || |||||||||||||||||| | ||||| ||||||||||||||  |    
T  16088116 gaaagtaaacctgcaaaattgaacacgttagtattaacctagggtgtcacgaagattgtccttggaatttatccacatcaatgtgcgcaaactcccc-gg 16088214  T
Q  788 attcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcacaaatt 844  Q
    || || ||||| | ||||||| | |||||||||||||| |||||| |||||| ||||    
T  16088215 atacagcaggtccctctcctaatgatggaggtaacagaacaacaacaatcaccaatt 16088271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 699 - 832
Target Start/End: Original strand, 14837182 - 14837315
Alignment:
Q  699 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggt 798  Q
    ||||| |||||||||||||||||||||||||||| ||| || | ||||| ||||||||| ||| ||||||| ||||||||||| ||| ||| || ||| |    
T  14837182 tgcaaaattgaacacgttagtattaacctgaggcatcatgaaggctgtcattggaatttgtccgcctcaatgtgcgcaaactctccaggatacatcagat 14837281  T
Q  799 acttctcctagttatggaggtaacagagcaacaa 832  Q
     ||||||||||| |||||||||||||| ||||||    
T  14837282 ccttctcctagtgatggaggtaacagaacaacaa 14837315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 3644215 - 3644114
Alignment:
Q  299 ctgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattgagataatgac 398  Q
    |||||| ||||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||| ||| | | ||||| |||| ||||||||||||    
T  3644215 ctgattagtttggtttaatagatttcatttggcctatgaaaaggatgtggataacagactaattaattataagcctcctgaaccttactgagataatgac 3644116  T
Q  399 at 400  Q
    ||    
T  3644115 at 3644114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 637 - 876
Target Start/End: Original strand, 19033698 - 19033941
Alignment:
Q  637 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 735  Q
    ||||| ||||||||||| | ||||||||||| ||||| || || |  |||  || ||||||||||||| |||||||||||||||||||||||||||||||    
T  19033698 gcagccaccgcaacttcgagtaacaacgaaccagattctgcaaaacaaactagacagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtc 19033797  T
Q  736 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||||||||||| |||||||||||| | || ||||||    
T  19033798 acgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacaacaggtccttctcctagtgatggaggtaacataacagcaagaa 19033897  T
Q  836 tcacaaatttttatca---tgatgttttcctcaggaagtaaaat 876  Q
    |||| |||| ||||||    |||||||| ||||| |||||||||    
T  19033898 tcaccaattattatcaggcagatgtttttctcagaaagtaaaat 19033941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 639 - 845
Target Start/End: Complemental strand, 38968633 - 38968427
Alignment:
Q  639 agcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcac 737  Q
    |||||||||||||||||||||||||||||  |||| || ||||| |||  |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  38968633 agcaaccgcaacttcaaataacaacgaaccggattctgcaagattaactagaaagtaaacctgcaa-attgaacatgttagtattaacctgaggcgtcac 38968535  T
Q  738 gaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaatc 837  Q
    || ||||||||||  ||||||||| ||||| | |||| |||||  | | |||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  38968534 gaagactgtccttaaaatttatccgcctcagtgtgcgtaaactatctaggattcaacagatacttctcttagttatggaggtaacagagcaacaagaatc 38968435  T
Q  838 acaaattt 845  Q
    ||||||||    
T  38968434 acaaattt 38968427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 705 - 845
Target Start/End: Original strand, 28830745 - 28830885
Alignment:
Q  705 attgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttct 804  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||| || | |||||||| ||||| ||||||| | | |||||    
T  28830745 attgaacacgttagtattaacctaaggcgtcatgaggactgttcttggaatttatccacctccatgtacgcaaacttcccataattcaaccgattcttct 28830844  T
Q  805 cctagttatggaggtaacagagcaacaagaatcacaaattt 845  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  28830845 cctagttatggaggtaacagaacaataagaatcacaaattt 28830885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 9e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 643 - 835
Target Start/End: Original strand, 38643686 - 38643879
Alignment:
Q  643 accgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgagg 741  Q
    ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  ||||||||||||||||||||||||||| |    
T  38643686 accgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacgaag 38643785  T
Q  742 actgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| ||| || ||||| ||||||||| | |||||||||||||| |||||||||    
T  38643786 actgtccttgaaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttctcctaatgatggaggtaacagaacaacaagaa 38643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 711 - 836
Target Start/End: Complemental strand, 8263496 - 8263371
Alignment:
Q  711 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagt 810  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||| ||||||| |||    
T  8263496 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaattccccaggattcaacaggtccttctccaagt 8263397  T
Q  811 tatggaggtaacagagcaacaagaat 836  Q
    ||||| ||| ||||| || |||||||    
T  8263396 tatggtggttacagaacagcaagaat 8263371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 753 - 835
Target Start/End: Complemental strand, 32791863 - 32791781
Alignment:
Q  753 aatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||||||||  |||||||||||||||||||||| ||| ||  |||| ||||||||||| |||||||||||||| |||||||||    
T  32791863 aatttatccgtctcaatatgcgcaaactccccacgatacagtaggtccttctcctagtgatggaggtaacagaacaacaagaa 32791781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 9e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 645 - 845
Target Start/End: Complemental strand, 22462508 - 22462307
Alignment:
Q  645 cgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggac 743  Q
    |||||||||||||||||| |||| ||||| |  |||| ||||| |||||||||| || || |||||| |||||||||||||| |||||||||||||||||    
T  22462508 cgcaacttcaaataacaatgaaccagattctacaagacgaaccagaaagtaaacttgtaaaattgaatacgttagtattaacatgaggcgtcacgaggac 22462409  T
Q  744 tgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcacaaat 843  Q
    |||| ||||||||||||| ||||| | |||| |||||||||| |||||||||||| ||||||||| |||||||||||||| | || ||||||| | ||||    
T  22462408 tgtctttggaatttatccgcctcagtgtgcggaaactccccaggattcaacaggtccttctcctaattatggaggtaacaaaacatcaagaattataaat 22462309  T
Q  844 tt 845  Q
    ||    
T  22462308 tt 22462307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 645 - 835
Target Start/End: Complemental strand, 14059126 - 14058935
Alignment:
Q  645 cgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggac 743  Q
    ||||||||||||||||||||||| ||||| || || |  |||   ||||||||||||||| ||||||  ||||||||||||||||||||||||||| |||    
T  14059126 cgcaacttcaaataacaacgaaccagattctgcaaaacaaactacaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacgaagac 14059027  T
Q  744 tgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||||||||||||||||| ||||||| ||||||||||||| | ||| || ||||| ||||||||||| |||||||||||||| || ||||||    
T  14059026 tgtccttggaatttatccgcctcaatgtgcgcaaactccctaggatacagcaggtccttctcctagtgatggaggtaacagaacagcaagaa 14058935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 711 - 835
Target Start/End: Complemental strand, 23544696 - 23544572
Alignment:
Q  711 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagt 810  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||| | |||||| ||||    
T  23544696 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccacctcaatgtgcgcaaactccccaggatacagcagatccttctcttagt 23544597  T
Q  811 tatggaggtaacagagcaacaagaa 835  Q
     |||||||||||||| || ||||||    
T  23544596 gatggaggtaacagaacagcaagaa 23544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 6e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 637 - 835
Target Start/End: Original strand, 19229589 - 19229784
Alignment:
Q  637 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 735  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  ||||||||||||| || ||    |||||||||||||||||||||||||    
T  19229589 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacctgaggcgtc 19229684  T
Q  736 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| || ||||||    
T  19229685 acgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaagatacaacaggtccttctcctagtgatggaggtaacagaacagcaagaa 19229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 643 - 836
Target Start/End: Complemental strand, 47205010 - 47204816
Alignment:
Q  643 accgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgagg 741  Q
    ||||||||||||||||||| ||||  ||||| || || |  |||  ||||||||| |||||| |||||| |||||||||||||||||||||||||||| |    
T  47205010 accgcaacttcaaataacatcgaatcagattctgcaaaacaaactagaaagtaaatctgcaaaattgaatacgttagtattaacctgaggcgtcacgaag 47204911  T
Q  742 actgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaat 836  Q
    ||||||||| |||||||||| ||||||| |||||||||| |||| ||| || ||||| ||||||||||| |||||||||||||| || |||||||    
T  47204910 actgtccttagaatttatccgcctcaatgtgcgcaaacttcccaggatacagcaggtccttctcctagtgatggaggtaacagaacagcaagaat 47204816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 756 - 835
Target Start/End: Complemental strand, 47204809 - 47204730
Alignment:
Q  756 ttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||||| ||||||| ||||||||||| ||| | | |||||||| ||||||||||| |||||||||||||| || ||||||    
T  47204809 ttatccgcctcaatgtgcgcaaactctccagggtacaacaggtccttctcctagtgatggaggtaacagaacagcaagaa 47204730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 688 - 873
Target Start/End: Complemental strand, 8360296 - 8360110
Alignment:
Q  688 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatg 787  Q
    |||||| || |||||| | | ||||| |||||||| ||||||  ||||| || || |||||||  ||||||| | | |||| ||| ||||| || ||| |    
T  8360296 gaaagtgaatctgcaaaactaaacacattagtatttacctgaatcgtcatgaagattgtccttaaaatttattcgcatcaaaatgtgcaaaatctccagg 8360197  T
Q  788 attcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcacaaattt-ttatcatgatgttttcctcaggaagtaa 873  Q
    |||||||| || ||||||||||||||| |||||||| | || ||||||| | |||||| |||   ||||||||  ||||||||||||    
T  8360196 attcaacaagttcttctcctagttatgaaggtaacacaacaccaagaattataaatttattaggctgatgtttatctcaggaagtaa 8360110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 9e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 637 - 835
Target Start/End: Original strand, 26973381 - 26973579
Alignment:
Q  637 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 735  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  26973381 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtc 26973480  T
Q  736 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    || | |||||||||||| |||||||| ||||||| ||||||||||  ||| ||| |||||||| ||||||||||| |||||||||||||| || ||||||    
T  26973481 acaaagactgtccttgg-atttatccgcctcaatgtgcgcaaactttccaggatacaacaggtccttctcctagtgatggaggtaacagaacagcaagaa 26973579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 637 - 835
Target Start/End: Original strand, 7505022 - 7505220
Alignment:
Q  637 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 735  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  ||||||||||||||||||| |||    
T  7505022 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggtgtc 7505121  T
Q  736 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||| | || ||| || ||| | ||||||||||| |||||||||||||| || ||||||    
T  7505122 acgaagactgtccttgaaatttatccgcctcaatatgcgcaaact-cgcaggatacagcagatccttctcctagtgatggaggtaacagaacagcaagaa 7505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 688 - 835
Target Start/End: Original strand, 26968905 - 26969052
Alignment:
Q  688 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatg 787  Q
    |||||||||||||||| ||||||   |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |||||| |    
T  26968905 gaaagtaaacctgcaaaattgaatgtgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaaatccccagg 26969004  T
Q  788 attcaacaggtacttctcctagttatggaggtaacagagcaacaagaa 835  Q
    || || ||||| ||||||||| | |||||||||||||| || ||||||    
T  26969005 atacagcaggtccttctcctaatgatggaggtaacagaacatcaagaa 26969052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 641 - 845
Target Start/End: Original strand, 17364665 - 17364867
Alignment:
Q  641 caaccgcaacttcaaataacaacgaactagatttggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgag 740  Q
    |||| |||||||||||||||||||||| |||||  | |   ||||  |||||||||| ||||| |||| | ||||| ||||||| |||| || |||||||    
T  17364665 caactgcaacttcaaataacaacgaaccagattctgcac--gaactagaaagtaaacttgcaaaattggaaacgttggtattaaactgaagcatcacgag 17364762  T
Q  741 gactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcaca 840  Q
    |||  | |||| ||||||||| ||| ||| |   |||||| ||||| | |||| |||  ||||||||||||||||||||  |||| ||||| ||||||||    
T  17364763 gaccatacttgaaatttatccgccttaatgtaaacaaacttcccataactcaagaggcccttctcctagttatggaggttgcagaacaacatgaatcaca 17364862  T
Q  841 aattt 845  Q
    |||||    
T  17364863 aattt 17364867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 712 - 835
Target Start/End: Original strand, 53726830 - 53726953
Alignment:
Q  712 acgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagtt 811  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||| |||||||||||     
T  53726830 acgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttctcctagtg 53726929  T
Q  812 atggaggtaacagagcaacaagaa 835  Q
    |||||||||||||| || ||||||    
T  53726930 atggaggtaacagaacagcaagaa 53726953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 711 - 835
Target Start/End: Original strand, 53731311 - 53731435
Alignment:
Q  711 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagt 810  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||| ||| |||||||    
T  53731311 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccccaggatacagcaggtccttttcctagt 53731410  T
Q  811 tatggaggtaacagagcaacaagaa 835  Q
     |||||||||||||| || ||||||    
T  53731411 gatggaggtaacagaacagcaagaa 53731435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 688 - 845
Target Start/End: Complemental strand, 42872089 - 42871932
Alignment:
Q  688 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccccatg 787  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||  |||||   || ||||| ||| ||      
T  42872089 gaaagtaaacctgtaaaattgaatacgttagtattaacctgaggcgtcacgaagactgccattggaatttatctgcctcagagtgtgcaaattcctcaga 42871990  T
Q  788 attcaacaggtacttctcctagttatggaggtaacagagcaacaagaatcacaaattt 845  Q
    |||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||    
T  42871989 attcaacatgttcttctcgtagttatggaggtaacagaacaacaagaatcacaaattt 42871932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 640 - 836
Target Start/End: Complemental strand, 5880 - 5684
Alignment:
Q  640 gcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacg 738  Q
    |||||||||||||||||||||||||||||||||| || || |  |||  |||| ||||||||||| ||| ||   | ||| |||||||||||||||||||    
T  5880 gcaaccgcaacttcaaataacaacgaactagattctgcaaaacaaactagaaattaaacctgcaaaattaaatg-gatagcattaacctgaggcgtcacg 5782  T
Q  739 aggactgtccttggaatttatccccctcaatatgcgcaaactccccatgattcaacaggtacttctcctagttatggaggtaacagagcaacaagaat 836  Q
    | ||||||| ||||||||||||| ||||||| ||||| |||||| || ||||||||| ||  |||||||| |||||||||| ||||| ||||| ||||    
T  5781 aagactgtcattggaatttatccgcctcaatgtgcgctaactcctcaggattcaacatgtcattctcctaattatggaggttacagaacaacacgaat 5684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University