View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731-Insertion-5 (Length: 946)

Name: NF4731-Insertion-5
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731-Insertion-5
NF4731-Insertion-5
[»] chr4 (2 HSPs)
chr4 (89-932)||(50778628-50779431)
chr4 (45-92)||(50779455-50779502)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 89 - 932
Target Start/End: Complemental strand, 50779431 - 50778628
Alignment:
Q  89 gtcattaaatcgtgttatgcatagttgtannnnnnnn-acacttaatcaaatattttttatgcagtacctatagaaacttccaacgattttt-agtctac 186  Q
    ||||||||||||||||||||||| |||||         ||| |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  50779431 gtcattaaatcgtgttatgcataattgtatttttttttacatttaatcaaatattttttatgcagtacctatagaaacttccaacatttttttagtctac 50779332  T
Q  187 acaatgtctaatgggttgcttttaatttttataaataaaataacacaaaaacaaatgaatgagttggcaagagatttcatatcatatttatttnnnnnnn 286  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||           
T  50779331 a--atgtctaatgggttgcttttaatttttataaataaaataacacaaaaacaattgaatgagttggcaagagatttcatatcatatttatttaaaaaaa 50779234  T
Q  287 nt-tagattcatcctaaaatacaagtggtgttaaatctctatatgcaacactgctcattgtattcatatccaattcaagatattgatctatgtaattatg 385  Q
       |||||||||| ||||| ||||| ||||||||||||||||  |||||| |||| |||||||| |||||| ||| |||||||| |||||||||||||||    
T  50779233 aaatagattcatcgtaaaaaacaagcggtgttaaatctctat--gcaacattgcttattgtatttatatccgatttaagatattaatctatgtaattatg 50779136  T
Q  386 tgtatatcatactccaatatcagttgacattaagaaataaactttttatgtaaatcatttttaaatgggcatctaaaatgtgacggggtgaataataatc 485  Q
     |||||           ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||                ||||||||    
T  50779135 agtatac----------tatcagttggcattaagaaataaactttttatgtaaatcatttttaaatgg-catctaa----------------taataatc 50779063  T
Q  486 aagaaagaaagnnnnnnngttgagttgtgaggatgggtagcatagcatgtccaagtaaagaaacagtaaacgataaacctaatgagcacgcaaacaaagc 585  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  50779062 aagaaagaaagaaaaaaagttgagttgtgaggatgggtagcatagcatgtccaa--------acagtaaacgataaacctaatgagcacgcaaacaaagc 50778971  T
Q  586 aaagaaagtcaaaagagtcatactagtacttacaaacttcatttaattaatctcccaaaccttagttaactagtaaatcatttattttctgcctcctcta 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50778970 aaagaaagtcaaaagagtcatactagtacttacaaacttcatttaattaatctcccaaaccttagttaactagtaaatcatttattttctgcctcctcta 50778871  T
Q  686 attctctctcgtccatcgatccatacatacccaacccaactatagagtcaatcgttttcttaattctaccacatgcatttttcaaaactccgtccatgtg 785  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50778870 attctctctcatccatcgatccatacatacccaacccaactatagagtcaatcgttttcttaattctaccacatgcatttttcaaaactccgtccatgtg 50778771  T
Q  786 gagtatttataaaaaccctcacccttccttctttttctttgtaataatccaagannnnnnnnnnnnnnnnnnnnnaatcctatatacaaataaattttga 885  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||    
T  50778770 gagtatttataaaaaccctcacccttccttctttttctttgtaataatccaaga-----ctctctctctctctcaaatcctatatacaaataaattttga 50778676  T
Q  886 aagtggctattggagaatcaatggatgt-aaaggaagaggaagcaaca 932  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  50778675 aagtggctattggagaatcaatggatgtaaaaggaagaggaagcaaca 50778628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 50779502 - 50779455
Alignment:
Q  45 atattttcggccatttttcattcgacaaatctttttcagtctttgtca 92  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  50779502 atattttcggtcatttttcatttgacaaatctttttcagtctttgtca 50779455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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