View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731-Insertion-6 (Length: 847)

Name: NF4731-Insertion-6
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731-Insertion-6
NF4731-Insertion-6
[»] chr5 (38 HSPs)
chr5 (8-374)||(13411677-13412031)
chr5 (644-801)||(32555340-32555497)
chr5 (598-801)||(34173386-34173598)
chr5 (644-743)||(2464821-2464921)
chr5 (8-104)||(13418698-13418794)
chr5 (644-743)||(25590582-25590682)
chr5 (643-769)||(578598-578724)
chr5 (644-743)||(40611412-40611512)
chr5 (644-742)||(544800-544899)
chr5 (644-797)||(2466595-2466744)
chr5 (663-780)||(32640459-32640572)
chr5 (644-723)||(545927-546007)
chr5 (662-741)||(9537212-9537292)
chr5 (8-104)||(13425572-13425668)
chr5 (662-772)||(19271532-19271644)
chr5 (8-107)||(13386166-13386265)
chr5 (644-797)||(28590934-28591084)
chr5 (663-723)||(4593031-4593092)
chr5 (663-723)||(8074621-8074682)
chr5 (641-712)||(37072727-37072799)
chr5 (644-723)||(40612550-40612630)
chr5 (644-742)||(8075705-8075804)
chr5 (644-742)||(14891019-14891118)
chr5 (645-742)||(18004811-18004909)
chr5 (663-723)||(14889940-14890001)
chr5 (8-84)||(13453115-13453191)
chr5 (644-741)||(4593974-4594072)
chr5 (662-714)||(13651041-13651094)
chr5 (644-740)||(21069461-21069557)
chr5 (663-723)||(28589870-28589931)
chr5 (662-714)||(31946933-31946986)
chr5 (8-107)||(13389954-13390053)
chr5 (714-769)||(30970406-30970461)
chr5 (638-723)||(19271669-19271755)
chr5 (644-716)||(28865180-28865248)
chr5 (47-84)||(13378246-13378283)
chr5 (8-85)||(13394414-13394491)
chr5 (667-743)||(32641598-32641675)
[»] chr6 (8 HSPs)
chr6 (603-801)||(19600037-19600236)
chr6 (638-769)||(29856911-29857041)
chr6 (643-752)||(12676333-12676443)
chr6 (643-797)||(6468658-6468802)
chr6 (647-742)||(31239839-31239935)
chr6 (662-769)||(29845670-29845776)
chr6 (601-720)||(5265327-5265447)
chr6 (502-581)||(6468829-6468908)
[»] chr1 (34 HSPs)
chr1 (643-801)||(26518260-26518411)
chr1 (643-779)||(11830060-11830196)
chr1 (643-754)||(16249814-16249926)
chr1 (644-739)||(25038053-25038149)
chr1 (644-739)||(25043265-25043361)
chr1 (645-780)||(52440399-52440530)
chr1 (663-741)||(9339817-9339896)
chr1 (644-741)||(7944307-7944405)
chr1 (592-720)||(1001271-1001400)
chr1 (646-714)||(1407802-1407871)
chr1 (639-719)||(44720722-44720803)
chr1 (667-743)||(32664678-32664754)
chr1 (644-800)||(6612582-6612734)
chr1 (644-742)||(9340897-9340996)
chr1 (644-741)||(32665642-32665741)
chr1 (662-743)||(6613838-6613920)
chr1 (644-721)||(7945447-7945525)
chr1 (662-768)||(39726514-39726619)
chr1 (663-742)||(52439632-52439712)
chr1 (590-759)||(1001739-1001907)
chr1 (644-742)||(22857431-22857530)
chr1 (662-715)||(11060664-11060718)
chr1 (644-716)||(8975331-8975404)
chr1 (662-741)||(34088322-34088402)
chr1 (620-723)||(39977480-39977584)
chr1 (644-719)||(50107078-50107154)
chr1 (662-716)||(29766113-29766168)
chr1 (649-715)||(44719527-44719594)
chr1 (662-739)||(34085712-34085790)
chr1 (644-740)||(3117821-3117918)
chr1 (649-743)||(5782551-5782646)
chr1 (662-732)||(22856868-22856939)
chr1 (799-840)||(39977680-39977721)
chr1 (644-732)||(51450172-51450261)
[»] chr2 (41 HSPs)
chr2 (590-742)||(31443097-31443250)
chr2 (644-740)||(43380739-43380836)
chr2 (640-797)||(8420747-8420904)
chr2 (603-772)||(31442462-31442632)
chr2 (644-741)||(39016256-39016354)
chr2 (663-797)||(2911309-2911439)
chr2 (644-741)||(14704157-14704255)
chr2 (662-781)||(11985860-11985982)
chr2 (644-742)||(32765089-32765188)
chr2 (662-738)||(21732285-21732362)
chr2 (662-738)||(21733627-21733704)
chr2 (644-742)||(39015157-39015256)
chr2 (644-732)||(17330101-17330190)
chr2 (663-743)||(24459325-24459406)
chr2 (663-743)||(40000206-40000287)
chr2 (643-742)||(12004849-12004949)
chr2 (589-723)||(12010155-12010291)
chr2 (644-779)||(28864626-28864762)
chr2 (644-740)||(17466213-17466310)
chr2 (663-743)||(31091398-31091479)
chr2 (644-740)||(43381045-43381142)
chr2 (799-847)||(12011234-12011282)
chr2 (644-723)||(24458212-24458292)
chr2 (644-723)||(34037544-34037624)
chr2 (644-714)||(37607274-37607345)
chr2 (644-710)||(38854961-38855028)
chr2 (643-769)||(12003738-12003873)
chr2 (649-718)||(12396162-12396232)
chr2 (662-719)||(14886647-14886705)
chr2 (662-715)||(26586174-26586228)
chr2 (667-723)||(2910275-2910332)
chr2 (662-742)||(5914884-5914965)
chr2 (663-723)||(31090328-31090389)
chr2 (644-714)||(26585248-26585318)
chr2 (662-719)||(18676698-18676756)
chr2 (666-743)||(39256870-39256950)
chr2 (665-714)||(39999123-39999173)
chr2 (644-716)||(18675256-18675328)
chr2 (644-720)||(33161940-33162017)
chr2 (663-723)||(33163329-33163390)
chr2 (662-723)||(38984861-38984921)
[»] chr8 (29 HSPs)
chr8 (644-771)||(39138487-39138615)
chr8 (644-723)||(41121277-41121357)
chr8 (643-781)||(2552185-2552321)
chr8 (644-742)||(32898317-32898416)
chr8 (644-741)||(5737876-5737974)
chr8 (644-740)||(41122616-41122713)
chr8 (663-741)||(1952843-1952922)
chr8 (644-742)||(10406358-10406457)
chr8 (644-720)||(33315030-33315107)
chr8 (644-715)||(28524930-28525002)
chr8 (663-721)||(45476353-45476412)
chr8 (662-723)||(30134756-30134818)
chr8 (663-740)||(35177565-35177643)
chr8 (644-713)||(41754687-41754757)
chr8 (661-723)||(13144529-13144592)
chr8 (649-742)||(28619404-28619498)
chr8 (663-723)||(10407475-10407536)
chr8 (663-743)||(35178676-35178757)
chr8 (662-714)||(41754158-41754211)
chr8 (663-742)||(45476415-45476495)
chr8 (644-741)||(5737014-5737112)
chr8 (661-719)||(9625379-9625438)
chr8 (662-723)||(5965313-5965375)
chr8 (643-732)||(8569559-8569649)
chr8 (504-578)||(24198932-24199006)
chr8 (662-719)||(28006471-28006529)
chr8 (662-719)||(28063774-28063832)
chr8 (646-715)||(31075170-31075239)
chr8 (644-708)||(12637647-12637712)
[»] chr7 (39 HSPs)
chr7 (650-781)||(2677094-2677226)
chr7 (643-800)||(385445-385601)
chr7 (644-780)||(7258427-7258559)
chr7 (644-741)||(44334323-44334421)
chr7 (644-740)||(33607368-33607465)
chr7 (644-771)||(384991-385118)
chr7 (644-723)||(8048655-8048735)
chr7 (644-743)||(44333289-44333389)
chr7 (662-740)||(12223553-12223632)
chr7 (663-800)||(45584316-45584448)
chr7 (644-740)||(10898947-10899044)
chr7 (644-740)||(48788546-48788643)
chr7 (649-760)||(24934954-24935066)
chr7 (620-801)||(39824277-39824456)
chr7 (662-800)||(24935508-24935645)
chr7 (663-741)||(35728959-35729038)
chr7 (644-741)||(30924882-30924980)
chr7 (644-741)||(43461590-43461688)
chr7 (644-739)||(7509327-7509424)
chr7 (662-741)||(6680386-6680466)
chr7 (644-723)||(48647334-48647414)
chr7 (644-741)||(7259558-7259655)
chr7 (663-723)||(42478161-42478222)
chr7 (644-741)||(43457620-43457717)
chr7 (501-581)||(24934799-24934879)
chr7 (702-800)||(12286820-12286918)
chr7 (644-797)||(42477532-42477681)
chr7 (643-688)||(9365199-9365244)
chr7 (646-742)||(10894497-10894593)
chr7 (644-740)||(35727850-35727947)
chr7 (662-741)||(8047005-8047085)
chr7 (644-715)||(24287652-24287724)
chr7 (644-719)||(48777409-48777484)
chr7 (662-720)||(8375497-8375556)
chr7 (662-740)||(34710257-34710336)
chr7 (667-721)||(46286698-46286753)
chr7 (670-723)||(19433806-19433860)
chr7 (644-713)||(30917884-30917954)
chr7 (644-741)||(39708281-39708379)
[»] chr3 (26 HSPs)
chr3 (644-797)||(55389291-55389440)
chr3 (697-800)||(33837482-33837585)
chr3 (590-772)||(40206000-40206178)
chr3 (663-743)||(53958971-53959052)
chr3 (662-740)||(47075245-47075324)
chr3 (644-741)||(52318190-52318288)
chr3 (663-740)||(55388230-55388308)
chr3 (649-732)||(33427888-33427972)
chr3 (663-741)||(48808543-48808622)
chr3 (644-740)||(2591777-2591875)
chr3 (644-741)||(36279104-36279202)
chr3 (644-740)||(48573137-48573234)
chr3 (644-740)||(48809529-48809626)
chr3 (644-723)||(48574350-48574430)
chr3 (661-723)||(33837332-33837395)
chr3 (644-740)||(17700671-17700768)
chr3 (663-743)||(53957844-53957925)
chr3 (662-741)||(20464259-20464339)
chr3 (644-743)||(36280188-36280288)
chr3 (662-741)||(36827328-36827408)
chr3 (668-754)||(40317946-40318033)
chr3 (687-772)||(2323219-2323305)
chr3 (667-712)||(29188273-29188319)
chr3 (649-723)||(19115058-19115133)
chr3 (693-723)||(3671253-3671283)
chr3 (649-741)||(47117945-47118037)
[»] chr4 (21 HSPs)
chr4 (646-772)||(42391728-42391855)
chr4 (8-106)||(47600455-47600553)
chr4 (643-769)||(25810257-25810385)
chr4 (663-797)||(47878306-47878436)
chr4 (644-741)||(20599759-20599857)
chr4 (644-741)||(42278201-42278299)
chr4 (644-732)||(4703079-4703168)
chr4 (644-740)||(19050408-19050505)
chr4 (644-713)||(2786395-2786465)
chr4 (664-740)||(53770944-53771021)
chr4 (643-742)||(4701934-4702034)
chr4 (643-752)||(38216617-38216725)
chr4 (663-741)||(47874734-47874813)
chr4 (667-720)||(44158699-44158753)
chr4 (644-715)||(24745954-24746026)
chr4 (644-723)||(39870545-39870625)
chr4 (663-720)||(6039312-6039370)
chr4 (701-779)||(25809656-25809734)
chr4 (504-578)||(53770331-53770405)
chr4 (662-714)||(32244464-32244517)
chr4 (644-689)||(50694901-50694946)
[»] scaffold0369 (1 HSPs)
scaffold0369 (643-800)||(8671-8828)
[»] scaffold0237 (2 HSPs)
scaffold0237 (638-769)||(3113-3243)
scaffold0237 (662-769)||(1875-1981)
[»] scaffold0767 (2 HSPs)
scaffold0767 (644-742)||(6105-6201)
scaffold0767 (642-743)||(5767-5869)
[»] scaffold0016 (1 HSPs)
scaffold0016 (667-769)||(36370-36473)
[»] scaffold0026 (1 HSPs)
scaffold0026 (701-779)||(92951-93029)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 13411677 - 13412031
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13411677 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattagaaacactcttaaaacaagcccttaaattt 13411776  T
Q  108 caataagtaataagtataagtaatttatctacatttgagatctttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattg 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13411777 caataagtaataagtataagtaa-ttatctacatttgagatctttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattg 13411875  T
Q  208 ttattgacggttgaaattatctataagaataagattatgagatcagggatccatt-aattttagtatatctcttattaaacatattttagattttcttct 306  Q
     |||||  ||||||||||||||| |              |||||||  ||||||| | |||| |||||| | ||||||||||||||||||||||| ||||    
T  13411876 ctattgttggttgaaattatctaca--------------agatcagaaatccattgatttttggtatatattttattaaacatattttagattttgttct 13411961  T
Q  307 gcgctatattcaagtgttaaaccatgatga---gtggggattacaaattaaaagatcaaataaaaataagg 374  Q
    ||| |||||||||||||| | |||||||||   ||||| ||||||||||||||||||||||||||||||||    
T  13411962 gcgttatattcaagtgtt-acccatgatgagacgtgggcattacaaattaaaagatcaaataaaaataagg 13412031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 644 - 801
Target Start/End: Complemental strand, 32555497 - 32555340
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||||  | || | | | ||| ||||||||||||||     
T  32555497 atgaggtgtcacatggactaaagtgaaagtagaaaattgtcacttggttcctgaaccgaaaatcaataatctcatactaaatctcaaattcctaaatccc 32555398  T
Q  744 gaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaaa 801  Q
    ||||| ||||||||||| |||||||||||||||||||  | ||||| |||||||||||    
T  32555397 gaattcaatcctcaaatccctaaatctcatctaattctctcttttgatcaaaatcaaa 32555340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 598 - 801
Target Start/End: Original strand, 34173386 - 34173598
Alignment:
Q  598 ttatgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctg 696  Q
    ||||| ||| |||| |||||  |||| ||||||| |||  |||| ||| |||| ||||| ||  |||| ||||||||||||||  ||||||||||| |||    
T  34173386 ttatgctaactgatgaggtgacaaatgttttgtgctgacaaggtgcataaggtatcacagggactaaactgaaagtagaaaatgatcactttggtctctg 34173485  T
Q  697 aaccgaaaatcaatatccccaaattgattct--------taaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaattccgtttttt 788  Q
    |||| |||||||||||||||||||||| | |        ||||| |||||||||||||||||||| |||||| ||| |||||||||||||||  | ||||    
T  34173486 aaccaaaaatcaatatccccaaattgaatttcaaatcactaaatccctaaatcctgaatttaatcttcaaatccctgaatctcatctaattctctctttt 34173585  T
Q  789 gctcaaaatcaaa 801  Q
    |  ||||||||||    
T  34173586 gtacaaaatcaaa 34173598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 644 - 743
Target Start/End: Original strand, 2464821 - 2464921
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| | | |||| |||||||||    
T  2464821 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcc 2464920  T
Q  743 t 743  Q
    |    
T  2464921 t 2464921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 13418794 - 13418698
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa 104  Q
    |||||||||||||||||||||||||||  | | ||| ||||||||||||||||||| |||||||| |||||||| || || ||| ||||||||||||    
T  13418794 gattatgtcaacacagcaatggagcgtctcgataaagcagatgttaaatatcgattcgtgattgatattggaaatacgctgaaaccaagcccttaaa 13418698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 644 - 743
Target Start/End: Original strand, 25590582 - 25590682
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  25590582 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtctctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 25590681  T
Q  743 t 743  Q
    |    
T  25590682 t 25590682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 643 - 769
Target Start/End: Complemental strand, 578724 - 578598
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||| ||||||  |||| |||||||| | |||  |||||||||||| ||||||||||||||||||||| ||||||| ||| | ||| ||||||     
T  578724 catgaggtgtgacatggactaaaatgaaagtaaagaatgatcactttggtccctgaaccgaaaatcaatatccctaaattgaatctcagatttctaaat- 578626  T
Q  742 ctgaatttaatcctcaaattcctaaatc 769  Q
    | ||||||||||| ||||||||||||||    
T  578625 cggaatttaatccacaaattcctaaatc 578598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 743
Target Start/End: Original strand, 40611412 - 40611512
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||| ||||| |||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  40611412 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcacttgggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 40611511  T
Q  743 t 743  Q
    |    
T  40611512 t 40611512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 644 - 742
Target Start/End: Original strand, 544800 - 544899
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| || | |||||||||||||||||| |||| || ||| |||||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  544800 atgaggtgtcacagggatcaaagtgaaagtagaaaatagtcatttgggttcctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 544899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 797
Target Start/End: Complemental strand, 2466744 - 2466595
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||| |||||   |||||||||||||||||| |||| |||||| |||||||| ||| ||||||| |||||||||| | | |||||| |||||||    
T  2466744 atgaggtgtcccatggaccaaagtgaaagtagaaaatagtcattttggtccctgaaccaaaattcaatattcccaaattgaatatcaaattcttaaatcc 2466645  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
         ||||  ||||||| ||||||| |||||||||||  ||||||| |||||||    
T  2466644 -----ttaaatctcaaatccctaaatgtcatctaattctcttttttgttcaaaat 2466595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 780
Target Start/End: Original strand, 32640459 - 32640572
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaatt 761  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||||| || ||||||| | | ||||||||||||||     ||||  |||||||     
T  32640459 aaagtgaaagtagaaaatggtcactttggtccttgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaatcc-----ttaaatctcaaatc 32640553  T
Q  762 cctaaatctcatctaattc 780  Q
    ||||||| |||||||||||    
T  32640554 cctaaatgtcatctaattc 32640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 546007 - 545927
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||    
T  546007 atgaggtgtcacaaggaccaaagtgaaagtagaaaatagtcactttggtccttgaaccaaaaatcaatatgcccaaattga 545927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 662 - 741
Target Start/End: Original strand, 9537212 - 9537292
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||||||||| ||||||||| ||| |||| | |||||||||||||||||||||| ||| |||| ||||||||    
T  9537212 taaagtgaaagtagaaaatagtcactttgatccctgaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatc 9537292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 13425668 - 13425572
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa 104  Q
    |||||||||||||||||||||||||||  | | ||| ||||||| ||||||||||| || ||||| |||||||| || || ||| ||||||||||||    
T  13425668 gattatgtcaacacagcaatggagcgtctcgagaaagcagatgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaa 13425572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 662 - 772
Target Start/End: Original strand, 19271532 - 19271644
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaa-tcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaa 759  Q
    |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||| | | | |||| | ||||| | ||||||||||| ||||    
T  19271532 taaagtgaaagtagaaaattgtcactttagtccctgaactgaaaattcaatatccccaaattaaatatcaaatccataaattccgaatttaatccccaaa 19271631  T
Q  760 ttcctaaatctca 772  Q
    |  ||||||||||    
T  19271632 tcgctaaatctca 19271644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 13386166 - 13386265
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    |||||||| ||||||||||| |||||   || |||| ||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||  |||||||||    
T  13386166 gattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgacattggaaacactctgaaaccaagttcttaaattt 13386265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 797
Target Start/End: Complemental strand, 28591084 - 28590934
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaacc-gaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||||||||| | | |||||| ||||||    
T  28591084 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaaatcaatattcccaaattgaatatcaaattcttaaatc 28590985  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
    |     ||||  ||||||| ||||||| |||| ||||||  ||||||| |||||||    
T  28590984 c-----ttaaatctcaaatccctaaatgtcatataattctcttttttgttcaaaat 28590934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 4593031 - 4593092
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||    
T  4593031 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattga 4593092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 8074621 - 8074682
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||    
T  8074621 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattga 8074682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 641 - 712
Target Start/End: Original strand, 37072727 - 37072799
Alignment:
Q  641 tacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatat 712  Q
    |||||||||||||||||||   ||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  37072727 tacatgaggtgtcacatggaccaaaatgaaagtagaaaatagtcactttagtccctgaaccgaaaatcaatat 37072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 40612630 - 40612550
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||   |||||||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||    
T  40612630 atgaggtgtcacaaggaccaaagtgaaagtagaaaatggttactttggtccctgaaccaaaaatcaatatgcccaaattga 40612550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 8075804 - 8075705
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   ||||||||||| ||||||  |||||||||||| |||||| ||||||||||| |||||||||| | | ||||||||| ||||    
T  8075804 atgaggtgtcacaaggaccaaagtgaaagtcgaaaatgatcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctatatcc 8075705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 14891118 - 14891019
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   ||||||| |||||||||| |||||||| |||| |||| | ||||||||||| |||||||||| | | ||||||||||||||    
T  14891118 atgaggtgtcacaaggaccaaagtgatagtagaaaatggtcactttagtccctgaatcaaaaatcaatattcccaaattgaatttcaaattcctaaatcc 14891019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 742
Target Start/End: Original strand, 18004811 - 18004909
Alignment:
Q  645 tgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||  |  |||| |||||||||||||| ||||||||||| |||||| | ||| |||||||||||||||||| | | |||| |||||||||    
T  18004811 tgaggtgtcacagagactaaaatgaaagtagaaaatagtcactttggtccctgaatcaaaattcaatatccccaaattgaatatcaaatccctaaatcc 18004909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 14889940 - 14890001
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||    
T  14889940 aaagtaaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattga 14890001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 13453191 - 13453115
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacac 84  Q
    ||||||||||||||||| ||||||||    |  ||| ||||||| |||||||||||||||||||| |||||||||||    
T  13453191 gattatgtcaacacagcgatggagcgccttcttaaagcagatgtgaaatatcgatttgtgattgatattggaaacac 13453115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 4594072 - 4593974
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||   | |||| |||||| ||||||||||| |||||||||| | | |||||||||||||    
T  4594072 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcatcgtagtccatgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 4593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 13651094 - 13651041
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatcc 714  Q
    ||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  13651094 taaagtgaaagtaaaaaatggtcactttagtccctgaaccgaaaatcaatatcc 13651041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 21069461 - 21069557
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||| |||||| |||| |||||||||||||||||||| |||| |||| | ||||||| |||||||||||| | ||| |||| ||| |||| |||||||    
T  21069461 atgacgtgtcatatggattaaagtgaaagtagaaaatggtca-tttgatccctgaactgaaaatcaatattctcaacttgaatctcaaatccctaaat 21069557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 28589870 - 28589931
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||    
T  28589870 aaagtaaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatataccaaaattga 28589931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 31946986 - 31946933
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatcc 714  Q
    ||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||    
T  31946986 taaagtgaaagtaaaaaatggtcactttggtccctgaatcgaaaatcaatatcc 31946933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 13389954 - 13390053
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    |||||||| ||||||||||| |||||   || |||| ||||||| ||||||||||||||| | || || ||||||||| | ||| ||||  |||||||||    
T  13389954 gattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgatatcggaaacactttgaaaccaagttcttaaattt 13390053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 769
Target Start/End: Complemental strand, 30970461 - 30970406
Alignment:
Q  714 cccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatc 769  Q
    |||||||||| |||| |||  |||||||||||||| ||||||||||| ||||||||    
T  30970461 cccaaattgaatctttaatctctaaatcctgaattcaatcctcaaatccctaaatc 30970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 638 - 723
Target Start/End: Complemental strand, 19271755 - 19271669
Alignment:
Q  638 aggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||| |||||||| ||| ||||  |||||||||||||||||||  ||| |||| | ||| ||||||||||||||||| |||| ||||    
T  19271755 aggtgcatgaggtatcatatggactaaagtgaaagtagaaaatgatcattttgatccctaaaccgaaaatcaatatctccaagttga 19271669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 644 - 716
Target Start/End: Complemental strand, 28865248 - 28865180
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatcccc 716  Q
    ||||||||||||||||   ||| ||||||| |||||||||||||||   ||| ||||||||||||||||||||    
T  28865248 atgaggtgtcacatggc--aaattgaaagttgaaaattgtcactttc--ccttaaccgaaaatcaatatcccc 28865180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 13378283 - 13378246
Alignment:
Q  47 gatgttaaatatcgatttgtgattgacattggaaacac 84  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  13378283 gatgtgaaatatcgatttgttattgacattggaaacac 13378246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 13394414 - 13394491
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacact 85  Q
    |||||||| |||||||||||| ||||   || |||| ||||||| ||||||||||||||| | || || |||||||||    
T  13394414 gattatgttaacacagcaatgaagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgatatcggaaacact 13394491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 743
Target Start/End: Complemental strand, 32641675 - 32641598
Alignment:
Q  667 tgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||| ||||| || |||||| ||| | |||| |||||||||||||||||||||| | | |||| ||||||||||    
T  32641675 tgaaagtaaaaaatggttactttgatccctcaaccaaaaatcaatatccccaaattgaatatgaaatccctaaatcct 32641598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 603 - 801
Target Start/End: Complemental strand, 19600236 - 19600037
Alignment:
Q  603 ttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctgaaccga 702  Q
    ||||||||| |||||  |||| ||||||| |||  |||| |||||  ||||||| ||  ||||||||||||||||||| |||||||||||||| || |||    
T  19600236 ttaattgatgaggtgacaaatgttttgtggtgacaaggtgcatgaaatgtcacagggactaaagtgaaagtagaaaatggtcactttggtcctaaatcga 19600137  T
Q  703 aaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaa-ttccgttttttgctcaaaatcaaa 801  Q
    |||| |||||||| ||||||| ||| | ||||||||||||||||||||||  | |||| | |||||||||||||| |||| ||||||| |||||||||||    
T  19600136 aaattaatatccctaaattgaatctcagattcctaaatcctgaatttaattttgaaatccttaaatctcatctaatttcctttttttgttcaaaatcaaa 19600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 638 - 769
Target Start/End: Original strand, 29856911 - 29857041
Alignment:
Q  638 aggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcct 736  Q
    |||| |||||||||||||| || |||||||| ||||||||||| |||| ||||||| ||||| |||||||||||||| ||  ||||| ||| |||| |||    
T  29856911 aggtgcatgaggtgtcacaaggattaaagtggaagtagaaaatggtcattttggtctctgaatcgaaaatcaatatctcc--attgaatctaaaatccct 29857008  T
Q  737 aaatcctgaatttaatcctcaaattcctaaatc 769  Q
    ||||||  |||||| || |||||| ||||||||    
T  29857009 aaatcccaaatttattcttcaaatccctaaatc 29857041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 643 - 752
Target Start/End: Complemental strand, 12676443 - 12676333
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||| | || ||||||| ||| ||||||||||||||||| || ||| |||||||||| ||||| | |||||||| ||| |||| ||||||||    
T  12676443 catgaggtgtcatagggattaaagttaaattagaaaattgtcactttagtccctaaaccgaaaattaatatacacaaattgaatctcaaatccctaaatc 12676344  T
Q  742 ctgaatttaat 752  Q
      |||||||||    
T  12676343 tcgaatttaat 12676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 643 - 797
Target Start/End: Complemental strand, 6468802 - 6468658
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||| ||||||| ||||||||||||||||||||  ||| |||||| || ||||| |||||||||||          | ||| |||| ||||||||    
T  6468802 catgaggtg-cacatggattaaagtgaaagtagaaaatgatcaatttggttcttgaaccaaaaatcaatat----------aatctcaaatccctaaatc 6468714  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
    | |||||||||| || ||| |||||||||||||||||||| | ||||| |||||||    
T  6468713 ccgaatttaatcttcgaatccctaaatctcatctaattccttcttttgttcaaaat 6468658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 647 - 742
Target Start/End: Complemental strand, 31239935 - 31239839
Alignment:
Q  647 aggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||   |||||| |||||||||||| |||||||| || || ||||| |||||||||||||||||||||| ||| |||| | |||||||    
T  31239935 aggtgtcacatgaactaaagtcaaagtagaaaatggtcacttttgttcttgaaccaaaaatcaatatccccaaattgaatctcaaatccttaaatcc 31239839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 662 - 769
Target Start/End: Original strand, 29845670 - 29845776
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaat 760  Q
    ||||||| ||||||||||| |||| ||||||| ||||| |||||||||||||| ||  ||||| ||| |||| |||||||||  |||||| || ||||||    
T  29845670 taaagtggaagtagaaaatagtcattttggtctctgaatcgaaaatcaatatctcc--attgaatctaaaatccctaaatcccaaatttattcttcaaat 29845767  T
Q  761 tcctaaatc 769  Q
     ||||||||    
T  29845768 ccctaaatc 29845776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 601 - 720
Target Start/End: Original strand, 5265327 - 5265447
Alignment:
Q  601 tgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaac 699  Q
    ||||||||||| |||||  |||| ||||||| | |  |||| |||||||||||||||||  ||||||||||||| |||||  ||| |||| | ||| |||    
T  5265327 tgttaattgatgaggtgacaaatgttttgtgctaacaaggtgcatgaggtgtcacatggagtaaagtgaaagtaaaaaataatcattttgatccctaaac 5265426  T
Q  700 cgaaaatcaatatccccaaat 720  Q
      | |||||||||||||||||    
T  5265427 ttagaatcaatatccccaaat 5265447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 581
Target Start/End: Complemental strand, 6468908 - 6468829
Alignment:
Q  502 ttgagtaaatggtcattttagtctttgactatacatctcgctatcacaaaggtttctgacttagtattaaatacaaaata 581  Q
    ||||||||||||||| |||  ||||||||| | ||| ||||| ||||||||||  |||||| |  |||||||||||||||    
T  6468908 ttgagtaaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaata 6468829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 801
Target Start/End: Original strand, 26518260 - 26518411
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||   |||||||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||||||    
T  26518260 catgaggtgtcacataaattaaagtgaaggtagaaaatggtcactttggtctctgaaccgaaaaccaatatctccaaattgaatctcaaattcctaaatc 26518359  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaaa 801  Q
    | ||||||||||        |||||||||||||||||||| | ||||| |||||||||||    
T  26518360 ccgaatttaatc--------cctaaatctcatctaattccctcttttgttcaaaatcaaa 26518411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 643 - 779
Target Start/End: Original strand, 11830060 - 11830196
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||| ||| |||||| |||||     
T  11830060 catgaggtgtcacatggattaaagtgaaagtagaaaatggtcattttgatcctagaaccaaaaatcaatatcctaaaattgaatctcaaattcttaaatt 11830159  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaatt 779  Q
     ||||||||||| | |||| ||||||||||||||||||    
T  11830160 ttgaatttaatcat-aaatccctaaatctcatctaatt 11830196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 643 - 754
Target Start/End: Original strand, 16249814 - 16249926
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||| ||||| | ||| ||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  16249814 catgagctgtcataggggctaaagtgaaagtagaaaatggtcattttagtccctgaaccgaaaatcaatatccctaaattgaatcttaaatccctaaatc 16249913  T
Q  742 ctgaatttaatcc 754  Q
     ||||||||||||    
T  16249914 ttgaatttaatcc 16249926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 644 - 739
Target Start/End: Original strand, 25038053 - 25038149
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaa 739  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||| ||| |||| ||||||    
T  25038053 atgaggtgtcacatgaactaaagtgaaagtagaaaattatcactttggtccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25038149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 644 - 739
Target Start/End: Original strand, 25043265 - 25043361
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaa 739  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||| ||| |||| ||||||    
T  25043265 atgaggtgtcacatgaactaaagtgaaagtagaaaattatcactttggtccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25043361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 645 - 780
Target Start/End: Complemental strand, 52440530 - 52440399
Alignment:
Q  645 tgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||| |||  |||||||||||||||||| ||||||||||| |||||||| ||||| | ||| |||||||||| | | ||||||||||||||     
T  52440530 tgaggtgtcacaggggccaaagtgaaagtagaaaatagtcactttggtccctgaaccaaaaataagtattcccaaattgaatatcaaattcctaaatcc- 52440432  T
Q  744 gaatttaatcctcaaattcctaaatctcatctaattc 780  Q
        ||||  ||||||| ||||||| |||||||||||    
T  52440431 ----ttaaatctcaaatccctaaatgtcatctaattc 52440399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 663 - 741
Target Start/End: Original strand, 9339817 - 9339896
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| | | |||| ||||||||    
T  9339817 aaagtgaaagtagaaaatggtcactttggtctctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 9339896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 7944307 - 7944405
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||| | | |||| ||||||||    
T  7944307 atgaggtgtcacatagaccaaagtgaaagtagaaaattatcactttggtccctggaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 7944405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 592 - 720
Target Start/End: Original strand, 1001271 - 1001400
Alignment:
Q  592 aaaaatttatgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttgg 691  Q
    ||||| || ||||||||||| |||||  || || ||| || |||  |||||||  |||||||||||||  ||||||||||||||||||| || ||||||     
T  1001271 aaaaacttttgttaattgatgaggtgacaattactttatgctgacaaggtacacaaggtgtcacatggactaaagtgaaagtagaaaatagttactttga 1001370  T
Q  692 tcc-tgaaccgaaaatcaatatccccaaat 720  Q
    ||| ||||||||||||||||||||| ||||    
T  1001371 tccttgaaccgaaaatcaatatccctaaat 1001400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 646 - 714
Target Start/End: Original strand, 1407802 - 1407871
Alignment:
Q  646 gaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatcc 714  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  1407802 gaggtgtcacatggactaaagtgaaagtagaaaattatcactttggtccttgaaccgaaaattaatatcc 1407871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 44720803 - 44720722
Alignment:
Q  639 ggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttgg-tcctgaaccgaaaatcaatatccccaaa 719  Q
    |||| |||||||||||||  |  |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||    
T  44720803 ggtatatgaggtgtcacactgactaaagtgaaagtagaaaattgtcactttggttcttgaaccgaaaatcaatatctccaaa 44720722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 667 - 743
Target Start/End: Original strand, 32664678 - 32664754
Alignment:
Q  667 tgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||||| |||||||||||| |||| | ||||||||||| |||||||||| | | |||||||||||||||    
T  32664678 tgaaagtagaaaatagtcactttggtcttgaatcaaaaatcaatattcccaaattgaatatcaaattcctaaatcct 32664754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 800
Target Start/End: Original strand, 6612582 - 6612734
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaa-tc 741  Q
    ||||||||||||| ||  |||| | ||||||||||||  ||||||| ||||| ||||| |||||||||||||||||||||| ||| |||| |||||| ||    
T  6612582 atgaggtgtcacagggactaaattcaaagtagaaaatgatcacttttgtccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaattc 6612681  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
    || |||      ||||||| ||||||| |||||||||||  ||||||| | ||||||||    
T  6612682 ctaaat------ctcaaatccctaaatgtcatctaattctcttttttgtttaaaatcaa 6612734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 9340996 - 9340897
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| ||| ||||||| |||||| ||| | | ||||||||||||||    
T  9340996 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaattcaatattcccaaaatgaatatcaaattcctaaatcc 9340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 32665741 - 32665642
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaac-cgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||| | | |||| ||||||||    
T  32665741 atgaggtgtcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaacacaaaaatcaatatccccaaattgaatatcaaatccctaaatc 32665642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 662 - 743
Target Start/End: Complemental strand, 6613920 - 6613838
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||||| ||||| | |||||| ||| |||||| |||||||||||||||||||||| ||| |||| ||||||||||    
T  6613920 taaagtgaaagtaggaaattattactttgttccctgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaatcct 6613838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 721
Target Start/End: Complemental strand, 7945525 - 7945447
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaatt 721  Q
    ||||||||||||| || | |||||||||||||||||| ||||||||||| ||| |||| ||||||||||| ||||||||    
T  7945525 atgaggtgtcacaaggatcaaagtgaaagtagaaaatggtcactttggtccctaaaccaaaaatcaatattcccaaatt 7945447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 662 - 768
Target Start/End: Complemental strand, 39726619 - 39726514
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaatt 761  Q
    ||||||||||||||||||| |||| ||| | |||||||| |||||||||||| ||||||||| |   |||| ||||||||| ||| ||||||| |||||     
T  39726619 taaagtgaaagtagaaaatagtcattttagccctgaaccaaaaatcaatatcaccaaattgaattccaaatccctaaatcccgaa-ttaatccccaaatc 39726521  T
Q  762 cctaaat 768  Q
    |||||||    
T  39726520 cctaaat 39726514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 663 - 742
Target Start/End: Original strand, 52439632 - 52439712
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||||||||||| ||||||||| ||| | |||| ||||||||||||| |||||||| | | ||||||||||||||    
T  52439632 aaagtgaaagtagaaaatggtcactttgatccctaaaccaaaaatcaatatcctcaaattgaatatcaaattcctaaatcc 52439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 590 - 759
Target Start/End: Complemental strand, 1001907 - 1001739
Alignment:
Q  590 ttaaaaatttatgttaattgataaggtggaaaatattttgtgttgatcag-gtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactt 688  Q
    ||||||| || |||||| |||| ||||||||||| ||||||| | ||||  || | |||||||||||||||  |||| |||||||| ||||  |||| ||    
T  1001907 ttaaaaaattttgttaactgatgaggtggaaaatgttttgtgat-atcaatgtgcgtgaggtgtcacatggactaaaatgaaagtaaaaaaaagtcattt 1001809  T
Q  689 tggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaa 759  Q
    || |||| ||| ||||| |||||||||| ||||| | ||||||||  |||||||| ||||||||||||||||    
T  1001808 tgatccttgaatcgaaa-tcaatatccc-aaattaaatcttaaatctctaaatcccgaatttaatcctcaaa 1001739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 22857530 - 22857431
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttg-gtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||||||  ||||||||||||||||| | |||||||||    ||||||| ||||||||||| |||||||||| ||| |||| | |||||||    
T  22857530 atgaggtgtcacatggactaaagtgaaagtagaaactagtcactttgaaaactgaaccaaaaatcaatatacccaaattgaatctcaaatccttaaatcc 22857431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 715
Target Start/End: Complemental strand, 11060718 - 11060664
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccc 715  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  11060718 taaagtgaaagtagaaaattgtcactttgatccctgaacagaaaatcaatatccc 11060664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 716
Target Start/End: Original strand, 8975331 - 8975404
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctg-aaccgaaaatcaatatcccc 716  Q
    ||||| ||||||| ||  ||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||    
T  8975331 atgagatgtcacagggactaaagtgaaagtagaaaatggtcactttggtcccgaaaccaaaaatcaatatcccc 8975404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Complemental strand, 34088402 - 34088322
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||||  |||||||||||| |||||||  ||| |||||||||||||||||| | | |||| ||||||||    
T  34088402 taaagtgaaagtagaaatgtgtcactttggtccctgaacaaaaattcaatatccccaaattgaatttcaaatccctaaatc 34088322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 723
Target Start/End: Original strand, 39977480 - 39977584
Alignment:
Q  620 aaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaa 718  Q
    |||||||||||| | |  ||||||||||||||||||| ||  ||||||  | |||||||||  | ||||||||| ||||||| ||||||||||||| |||    
T  39977480 aaatattttgtgctcacaaggtacatgaggtgtcacaaggactaaagtagatgtagaaaatgataactttggtctctgaaccaaaaatcaatatcctcaa 39977579  T
Q  719 attga 723  Q
    |||||    
T  39977580 attga 39977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 719
Target Start/End: Complemental strand, 50107154 - 50107078
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaa 719  Q
    ||||||||||||||||  ||| |||||||||| | || ||||||||||||| | |||||||||| ||||||||||||    
T  50107154 atgaggtgtcacatggactaacgtgaaagtaggacatggtcactttggtcctttaaccgaaaattaatatccccaaa 50107078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 716
Target Start/End: Original strand, 29766113 - 29766168
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatcccc 716  Q
    |||||||||| |||||||||||||||||||| |||||||  |||||||||||||||    
T  29766113 taaagtgaaaatagaaaattgtcactttggtccctgaacaaaaaatcaatatcccc 29766168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 649 - 715
Target Start/End: Original strand, 44719527 - 44719594
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccc 715  Q
    ||||||||||   |||| |||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  44719527 gtgtcacatgaactaaaatgaaagtagaaaattgtcactttgctccctgaactgaaaatcaatatccc 44719594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 739
Target Start/End: Original strand, 34085712 - 34085790
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaa 739  Q
    |||| ||||||||||||||  |||||||| | || ||||| |||||||||||||||||||||| | | |||||||||||    
T  34085712 taaaatgaaagtagaaaatgatcactttgatgcttgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaa 34085790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 3117821 - 3117918
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||  |  |||||||||||||||||||  ||| ||| ||||| ||||| ||||| |||||||||||||||| | | |||| |||||||    
T  3117821 atgaggtgtcacaatgactaaagtgaaagtagaaaatgatcattttagtccttgaaccaaaaattaatatccccaaattgaatatcaaatccctaaat 3117918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 743
Target Start/End: Original strand, 5782551 - 5782646
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||  |||||||||| || ||||||||||||||  | ||| |||| |||||||||||||||||  | | ||| | |||||||||||||    
T  5782551 gtgtcacatggactaaagtgaaactaaaaaattgtcactttaatccctaaaccaaaaatcaatatccccaatatcaatctcacattcctaaatcct 5782646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 732
Target Start/End: Original strand, 22856868 - 22856939
Alignment:
Q  662 taaagtgaaagtagaaaattgtcacttt-ggtcctgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    |||||||||||||||||||  ||||||| | ||||||||| ||| ||||||||| |||||||| ||| ||||    
T  22856868 taaagtgaaagtagaaaatgatcactttagttcctgaaccaaaattcaatatcctcaaattgaatctcaaat 22856939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 799 - 840
Target Start/End: Original strand, 39977680 - 39977721
Alignment:
Q  799 aaacaccaaaatcaaatcacataatgatggatgttggtgcaa 840  Q
    ||||||||||||  |||||||| |||||||||||||||||||    
T  39977680 aaacaccaaaattgaatcacatgatgatggatgttggtgcaa 39977721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 732
Target Start/End: Original strand, 51450172 - 51450261
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    ||||||||||||| ||  |||| ||||||||||||||  ||||| | |||| |||||| ||||| ||||||||||| |||| ||| ||||    
T  51450172 atgaggtgtcacagggactaaactgaaagtagaaaatgatcactatagtccatgaaccaaaaataaatatccccaacttgaatctcaaat 51450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 590 - 742
Target Start/End: Complemental strand, 31443250 - 31443097
Alignment:
Q  590 ttaaaaatttatgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcacttt 689  Q
    ||||||| || |||||| || | | |||| |||||||||||||||   |||| ||||||||||||||  |  |||||||||||||||||||||||| |||    
T  31443250 ttaaaaacttttgttaactggtgaagtggcaaatattttgtgttggcaaggtgcatgaggtgtcacagtgactaaagtgaaagtagaaaattgtcatttt 31443151  T
Q  690 gg-tcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    || |||||||||||||||||||||| ||||||| | ||| ||||||||||||||    
T  31443150 ggttcctgaaccgaaaatcaatatctccaaattaaatctcaaattcctaaatcc 31443097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 43380739 - 43380836
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||   ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| | | ||||||||||||    
T  43380739 atgaggtgtcacatgaactaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaat 43380836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 640 - 797
Target Start/End: Complemental strand, 8420904 - 8420747
Alignment:
Q  640 gtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaa 738  Q
    |||||||||||||||||  | ||||| ||||||| |||||| |||  |||||||| | ||  |||||||||||| || ||||||| ||| ||||||||||    
T  8420904 gtacatgaggtgtcacaaagattaaactgaaagtggaaaatagtcg-tttggtccctaaattgaaaatcaatattccgaaattgaatctcaaattcctaa 8420806  T
Q  739 atcctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
    |||| |||||||||| | |||| ||||||| |||||||||||| | ||||| |||||||    
T  8420805 atcccgaatttaatcataaaatccctaaatttcatctaattccctcttttgttcaaaat 8420747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 603 - 772
Target Start/End: Original strand, 31442462 - 31442632
Alignment:
Q  603 ttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccg 701  Q
    ||||||||| | ||||||||| ||||||| |||  | || |||||||||||| | ||  ||||||||||||  |||||   ||| ||||||| |||||||    
T  31442462 ttaattgatgaagtggaaaatgttttgtgctgacaaagtgcatgaggtgtcataaggactaaagtgaaagtcaaaaatgaacacattggtccctgaaccg 31442561  T
Q  702 aaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctca 772  Q
    |||||||||||||| ||||||| ||| |||| |||| |||| || ||||||||  ||||||||||||||||    
T  31442562 aaaatcaatatccctaaattgaatctcaaatccctatatcccgattttaatccctaaattcctaaatctca 31442632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 39016354 - 39016256
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| | | |||| ||||||||    
T  39016354 atgaggtgtcacatggaccaaagtgaaagtagaaaattgtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatgaaatccctaaatc 39016256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 663 - 797
Target Start/End: Complemental strand, 2911439 - 2911309
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaatt 761  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||||||  ||||||||| | | ||||||||||||||     ||||  ||||||||    
T  2911439 aaagtgaaagtagaaaattgtcactttggtctcttaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatcc-----ttaaatctcaaatt 2911345  T
Q  762 cctaaatctcatctaattccgttttttgctcaaaat 797  Q
    ||||||| |||||||||||  | ||||| |||||||    
T  2911344 cctaaatgtcatctaattctctcttttgttcaaaat 2911309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 14704157 - 14704255
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | | |||| ||||||||    
T  14704157 atgaggtgtcacagggaccaaagtgaaagtagaaaatagtcactttggtccatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 14704255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 662 - 781
Target Start/End: Original strand, 11985860 - 11985982
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaa--ttcctaaatcctgaatttaatcctcaa 758  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||||| |||||  ||||||||| ||| |||  | |||||||||| ||||||||||||||    
T  11985860 taaagtgaaagtagaaaaaagtcactttgatccctgaaccgaaaattaatatttccaaattgaatctcaaaaatccctaaatcctaaatttaatcctcaa 11985959  T
Q  759 attcctaaatctcatctaattcc 781  Q
    ||  |||||||| || |||||||    
T  11985960 atgtctaaatcttatataattcc 11985982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 644 - 742
Target Start/End: Original strand, 32765089 - 32765188
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||| | ||  ||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||| | | |||| |||||||||    
T  32765089 atgaggtgtcatagggactaaagtgaaagtagaaaatggtcgctttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcc 32765188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 662 - 738
Target Start/End: Original strand, 21732285 - 21732362
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaa 738  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||| ||| |||| |||||    
T  21732285 taaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaattaatatccccaaattgaatctcaaatccctaa 21732362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 662 - 738
Target Start/End: Complemental strand, 21733704 - 21733627
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaa 738  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||| ||| |||| |||||    
T  21733704 taaagtgaaagtaaaaaatggtcactttggtctctgaaccgaaaatcaatattcccaaattgaatctcaaatccctaa 21733627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 742
Target Start/End: Original strand, 39015157 - 39015256
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| |||| |||||||| |||||| ||||||||||| |||||||||| | | ||||||| ||||||    
T  39015157 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcagtttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaattccaaaatcc 39015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 732
Target Start/End: Complemental strand, 17330190 - 17330101
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    |||||||||||||  |  ||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||||| ||| ||||    
T  17330190 atgaggtgtcacagagactaaagtgaaagtaaaaaatggtcactttggtccctgaacccaaaatcaatatccctaaattgaatctcaaat 17330101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 743
Target Start/End: Complemental strand, 24459406 - 24459325
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||||||||| ||||||||| ||| |||||| ||||||||||| |||||||||| | | |||||| ||||||||    
T  24459406 aaagtgaaagtagaaaatggtcactttgatccctgaaccaaaaatcaatattcccaaattgaatatcaaattcgtaaatcct 24459325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 743
Target Start/End: Complemental strand, 40000287 - 40000206
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||||| |||||||||| | | ||||| |||||||||    
T  40000287 aaagtgaaagtagaaaatgatcactttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaatttctaaatcct 40000206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 643 - 742
Target Start/End: Complemental strand, 12004949 - 12004849
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||| ||||||| |  |||||| |||| |||||||||||  |||||||| | ||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  12004949 catgaggggtcacatcgactaaagttaaagaagaaaattgtcgttttggtcccttaaccgaaaaccaatatccccaaattgaatcttcaatccctaaatc 12004850  T
Q  742 c 742  Q
    |    
T  12004849 c 12004849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 589 - 723
Target Start/End: Original strand, 12010155 - 12010291
Alignment:
Q  589 attaaaaatttatgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggt-taaagtgaaagtagaaaattgtcact 687  Q
    |||||||| || |||||  |||| | |||| |||| |||||||||||  |||| |||| | ||||||| |||  ||||||||||||||||||| |||| |    
T  12010155 attaaaaacttctgttatctgatgatgtggcaaatgttttgtgttgacaaggtgcatgggatgtcacacgggactaaagtgaaagtagaaaatggtcatt 12010254  T
Q  688 ttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    |||||   |||||| ||||||||||||||||||||||    
T  12010255 ttggtatatgaaccaaaaatcaatatccccaaattga 12010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 779
Target Start/End: Complemental strand, 28864762 - 28864626
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||| ||||  |||||||||| ||||||||  ||| ||| || || |||  |||||||||||| ||||| |||| | | |||| |||||||||    
T  28864762 atgaggtgtcatatggactaaagtgaaaatagaaaatgatcattttagttccagaattgaaaatcaatattcccaagttgaatttcaaatccctaaatcc 28864663  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaatt 779  Q
     | |||||||||||||||   ||||||||||||||||    
T  28864662 cgcatttaatcctcaaatctttaaatctcatctaatt 28864626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 17466213 - 17466310
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttgg-tcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||||| |||| |||  ||||| |||||| |||| |||| | ||||||| ||||||    
T  17466213 atgaggtgtcacatggattaaagtaaaagtagaaaatgatcactttggttcctaaactaaaaattaatatctccaatttgaattttaaatttctaaat 17466310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 743
Target Start/End: Complemental strand, 31091479 - 31091398
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||||||||||||||| ||||||||||||  |||||| ||||||||||| || | ||||| | | |||||||||||||||    
T  31091479 aaagtgaaagtagaaaatggtcactttggtctttgaaccaaaaatcaatattccgagattgaatatcaaattcctaaatcct 31091398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 43381142 - 43381045
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||  |||||| ||| |||||||| |||| |||||||| |||||  |||||||||||||| ||||||| ||| |||| |||||||    
T  43381142 atgaggtgtcacaaggactaaagtaaaaatagaaaatagtcattttggtccctgaacacaaaatcaatatccctaaattgaatctcaaatccctaaat 43381045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 799 - 847
Target Start/End: Complemental strand, 12011282 - 12011234
Alignment:
Q  799 aaacaccaaaatcaaatcacataatgatggatgttggtgcaagctcgtc 847  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  12011282 aaacaccaaaatcgaatcacattatgatggatgttggtgcaaactcgtc 12011234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 723
Target Start/End: Original strand, 24458212 - 24458292
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| ||| || | ||||||||||||| ||||||||    
T  24458212 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctcaatcaaaaatcaatatcctcaaattga 24458292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 34037624 - 34037544
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||  |  |||||||| |||||||||| ||||||||| | |||||||| ||||||||||||| ||||||||    
T  34037624 atgaggtgtcacacagactaaagtgacagtagaaaatagtcactttgattcctgaaccaaaaatcaatatcctcaaattga 34037544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 644 - 714
Target Start/End: Original strand, 37607274 - 37607345
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatcc 714  Q
    ||||| ||||||| ||  ||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||    
T  37607274 atgagatgtcacaaggactaaagtgaacgtagaaaatagtcactttggtctctgaaccaaaaatcaatatcc 37607345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 644 - 710
Target Start/End: Original strand, 38854961 - 38855028
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaat 710  Q
    ||||||||||||| ||| |||| |||||||||| ||| ||||| ||||||| ||||||||||||||||    
T  38854961 atgaggtgtcacaggggctaaattgaaagtagataatagtcaccttggtccttgaaccgaaaatcaat 38855028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 769
Target Start/End: Original strand, 12003738 - 12003873
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattct--------taaatt 733  Q
    |||||| ||||||| ||  |||||||||| |||||||| || | ||||||| || ||||||||| ||||||||||||||||| | |        ||||||    
T  12003738 catgagatgtcacagggactaaagtgaaaatagaaaatagtaattttggtctctcaaccgaaaaccaatatccccaaattgaatatcaaatctctaaatt 12003837  T
Q  734 cctaaatcctgaatttaatcctcaaattcctaaatc 769  Q
    ||||||||| ||||||||||| |||||  |||||||    
T  12003838 cctaaatcccgaatttaatccccaaatcactaaatc 12003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 718
Target Start/End: Original strand, 12396162 - 12396232
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaa 718  Q
    |||||||||||  |||| |||||||||||||| |||||||| ||| || |||| |||||||||||||||||    
T  12396162 gtgtcacatggactaaaatgaaagtagaaaatagtcactttagtcactaaaccaaaaatcaatatccccaa 12396232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 719
Target Start/End: Original strand, 14886647 - 14886705
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaa 719  Q
    |||| |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||    
T  14886647 taaaatgaaagtacaaaattgtcgctttggtccttgaacagaaaatcaatatccccaaa 14886705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 715
Target Start/End: Complemental strand, 26586228 - 26586174
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccc 715  Q
    ||||||||||||||||||||||||||| | || ||||||||||||| ||||||||    
T  26586228 taaagtgaaagtagaaaattgtcacttcgatctctgaaccgaaaattaatatccc 26586174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 723
Target Start/End: Original strand, 2910275 - 2910332
Alignment:
Q  667 tgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||| ||||||  |||||||||||| |||||| ||||||||||||||||||||||    
T  2910275 tgaaagtcgaaaatgatcactttggtccatgaaccaaaaatcaatatccccaaattga 2910332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 742
Target Start/End: Complemental strand, 5914965 - 5914884
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||| |||||||| |||||||||||||| |||| |||||| ||||||||||||||||  |||| ||| ||||  ||||||||    
T  5914965 taaaatgaaagtaaaaaattgtcactttagtccctgaaccaaaaatcaatatccccagcttgaatctaaaatctctaaatcc 5914884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 31090328 - 31090389
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||| | | ||||||||| |||||| ||||| ||||||||||||||||    
T  31090328 aaagtgaaagtagaaaatggccgctttggtccctgaaccaaaaattaatatccccaaattga 31090389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 714
Target Start/End: Original strand, 26585248 - 26585318
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatcc 714  Q
    ||||||||||||| ||  |||||||||| ||| |||| ||||||||||| |||||||||||||| |||||||    
T  26585248 atgaggtgtcacagggactaaagtgaaaatag-aaatggtcactttggtccctgaaccgaaaataaatatcc 26585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 662 - 719
Target Start/End: Complemental strand, 18676756 - 18676698
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaa 719  Q
    ||||| ||||||||||||| ||||||||||| |||||||  |||||||||||| |||||    
T  18676756 taaagcgaaagtagaaaatggtcactttggtccctgaacaaaaaatcaatatctccaaa 18676698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 743
Target Start/End: Complemental strand, 39256950 - 39256870
Alignment:
Q  666 gtgaaagtagaaaattgtcactttgg---tcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    |||||| |||||||| ||||||||||   ||||||||| ||||| ||||| ||| |||||| ||| |||| ||||||||||    
T  39256950 gtgaaattagaaaatggtcactttggttctcctgaaccaaaaattaatattccccaattgaatctcaaatccctaaatcct 39256870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 714
Target Start/End: Original strand, 39999123 - 39999173
Alignment:
Q  665 agtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatcc 714  Q
    |||||||||||||||||||||||||| | |||||||  |||||||||||||    
T  39999123 agtgaaagtagaaaattgtcactttgatccctgaacaaaaaatcaatatcc 39999173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 716
Target Start/End: Original strand, 18675256 - 18675328
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatcccc 716  Q
    ||||||||||||| ||  |||||| |||||||||||||||||||||| ||| |||| | ||||| |||||||||    
T  18675256 atgaggtgtcaca-ggactaaagtcaaagtagaaaattgtcactttgatccttgaatcaaaaattaatatcccc 18675328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 720
Target Start/End: Original strand, 33161940 - 33162017
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaat 720  Q
    |||||||||||||  |  |||| ||||||||||||||  ||||||| |||| |||||| |||||| ||||||||||||    
T  33161940 atgaggtgtcacaaagactaaaatgaaagtagaaaatcatcactttagtccctgaaccaaaaatcgatatccccaaat 33162017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 723
Target Start/End: Complemental strand, 33163390 - 33163329
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||| ||||||||||| |||   |||||||| |||||| ||||||||||||||||||||||    
T  33163390 aaagtcaaagtagaaaaatgttgttttggtccctgaaccaaaaatcaatatccccaaattga 33163329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 723
Target Start/End: Complemental strand, 38984921 - 38984861
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||| |||||||  |||||||    
T  38984921 taaagtgaaagtagaaaattgtcactttagtcc-aaaccaaaaattaatatccaaaaattga 38984861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 644 - 771
Target Start/End: Complemental strand, 39138615 - 39138487
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||| | || | ||||||||||||||||||| |||||| ||| |||| ||||||||     
T  39138615 atgaggtgtcacaaggactaaagtgaaagtagaaaatggtcactttgattcttgtaccgaaaatcaatatccccgaattgaatctcaaatccctaaatct 39138516  T
Q  743 tgaatttaatcctcaaattcctaaatctc 771  Q
     ||||||||||||||||| ||||| ||||    
T  39138515 cgaatttaatcctcaaatccctaattctc 39138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 644 - 723
Target Start/End: Original strand, 41121277 - 41121357
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  41121277 atgaggtgtaacaagggctaaagtgaaagtagaaaattgtcactttggtccttgaaccaaaaatcaatatccccaaattga 41121357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 643 - 781
Target Start/End: Original strand, 2552185 - 2552321
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttgg-tcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||| | ||||||||||||||||||| |  | ||||| ||| ||  || ||||||    
T  2552185 catgaggtgtcaca-ggactaaagtgaaagtagaaaattgtcactttggtttctgaaccgaaaatcaatattcttagattgaatctcaa--tcgtaaatc 2552281  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattcc 781  Q
    | ||||||||| ||||||| | |||||||||| |||||||    
T  2552282 ccgaatttaattctcaaatccttaaatctcatttaattcc 2552321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 32898416 - 32898317
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||| | | |||| |||||||||    
T  32898416 atgaggtgtcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatcctcaaattgaatatcaaatccctaaatcc 32898317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 5737974 - 5737876
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||||||  |||||| |||||| ||||| |||||||||||| || || | |||||||||||||||||||||| ||| |||| ||||||||    
T  5737974 atgaggtgtcacatggactaaagtaaaagtaaaaaatggtcactttggtctctaaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatc 5737876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 41122713 - 41122616
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||| ||||||||| |  |||||||||| |||||||| ||||||||| ||| |||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  41122713 atgaagtgtcacattgactaaagtgaaaatagaaaatcgtcactttgatccctgaaccaaaaatcaatatctccaaattgaatctcaaattcctaaat 41122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 663 - 741
Target Start/End: Complemental strand, 1952922 - 1952843
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | | |||| ||||||||    
T  1952922 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatcaaatccctaaatc 1952843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 742
Target Start/End: Original strand, 10406358 - 10406457
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   ||||||| |||||||||| |||||||||||| ||||||| |||||||||||  ||||||||| | | ||||||||||||||    
T  10406358 atgaggtgtcacagggaccaaagtgatagtagaaaatagtcactttggtctctgaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatcc 10406457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 720
Target Start/End: Original strand, 33315030 - 33315107
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaat 720  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||  |||||| |||||||||||||    
T  33315030 atgaggtgtcacatggaccaaagtgaaagtagaaaatagtcactttggtccgtgaattgaaaattaatatccccaaat 33315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 715
Target Start/End: Original strand, 28524930 - 28525002
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccc 715  Q
    |||| |||||| ||||  ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  28524930 atgaagtgtcagatggactaaagtgaaagtaaaaaattgtcattttggtccgtgaaccgaaaatcaatatccc 28525002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 721
Target Start/End: Original strand, 45476353 - 45476412
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaatt 721  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||    
T  45476353 aaagtgaaagtagaaaattgtcactttggtccctgaaccaaaaatcaatattcctaaatt 45476412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 723
Target Start/End: Original strand, 30134756 - 30134818
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||||| | ||||||||    
T  30134756 taaagtgaaagtagaaaattgtcactttggtcctttaaccaaaaatcaatattcacaaattga 30134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 740
Target Start/End: Original strand, 35177565 - 35177643
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||| |||||||||||||| | | |||| |||||||    
T  35177565 aaagtgaaagtagaaaatggttactttggtccctgaaccaaaaatcagtatccccaaattgaatatcaaatccctaaat 35177643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 713
Target Start/End: Complemental strand, 41754757 - 41754687
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatc 713  Q
    |||| |||||||| || |||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||    
T  41754757 atgatgtgtcacagggattaaagtgaaagtaaaaaatggtcactttggtccatgaatcgaaaatcaatatc 41754687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 661 - 723
Target Start/End: Original strand, 13144529 - 13144592
Alignment:
Q  661 ttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||||||||||||||| | ||| || |||||||||||||  |||||||||    
T  13144529 ttaaagtgaaagtagaaaattgtcactttgatcccttaatcgaaaatcaatatttccaaattga 13144592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 742
Target Start/End: Complemental strand, 28619498 - 28619404
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||||  ||||  |||||||||||||  |||||||  ||| |||||| |||||||||||||||||||||| | | |||| |||||||||    
T  28619498 gtgtcacatggactaaatcgaaagtagaaaatgatcactttaatccatgaaccaaaaatcaatatccccaaattgaatttcaaatccctaaatcc 28619404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 723
Target Start/End: Complemental strand, 10407536 - 10407475
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||| || ||||| ||| ||||||| ||||||||||| ||||||||||    
T  10407536 aaagtgaaagtagaaaatggttactttagtctctgaaccaaaaatcaatatgcccaaattga 10407475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 743
Target Start/End: Complemental strand, 35178757 - 35178676
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    ||||||||| ||||||||  ||||||||| || |||||| ||||||||||| |||||||||| | | |||||| ||||||||    
T  35178757 aaagtgaaactagaaaatgatcactttggcccctgaaccaaaaatcaatattcccaaattgaatatcaaattcttaaatcct 35178676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 714
Target Start/End: Original strand, 41754158 - 41754211
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatcc 714  Q
    ||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||    
T  41754158 taaagtgaaagtaaaaaatagtcactttggtccctgaatcgaaaatcaatatcc 41754211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 742
Target Start/End: Complemental strand, 45476495 - 45476415
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||| |||||||||||| |||||||| |||| |||||| ||||||||||| |||||||| | ||| ||||  ||||||||    
T  45476495 aaagtaaaagtagaaaatggtcactttagtccctgaaccaaaaatcaatattcccaaattaaatctcaaatctctaaatcc 45476415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 5737014 - 5737112
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatc-aatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||  |||||| ||||||| ||||| |||||||||| ||||| || |||||| |||||||||||||||| ||| |||| | ||||||    
T  5737014 atgaggtgtcacaaggactaaagtaaaagtag-aaattatcactttggtccctgatccaaaaatcaaatatccccaaattgaatctcaaatccttaaatc 5737112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 719
Target Start/End: Original strand, 9625379 - 9625438
Alignment:
Q  661 ttaaagtgaaagtagaaaattgtcacttt-ggtcctgaaccgaaaatcaatatccccaaa 719  Q
    |||||||||||||||||||| |||||||| | || |||| ||||||||||||||| ||||    
T  9625379 ttaaagtgaaagtagaaaatggtcactttagttcgtgaatcgaaaatcaatatcctcaaa 9625438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 662 - 723
Target Start/End: Complemental strand, 5965375 - 5965313
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||||||||| |||||||  ||||   ||||||||||||| ||||||||    
T  5965375 taaagtgaaagtagaaaattgtcattttggtctatgaagtaaaaatcaatatccacaaattga 5965313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 732
Target Start/End: Original strand, 8569559 - 8569649
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    |||||||||||||||||  |||| |||||| | |||||| ||| |||| | |||||||  ||||||||||||| |||||||| ||| ||||    
T  8569559 catgaggtgtcacatggactaaaatgaaaggaaaaaattatcattttgatccctgaactaaaaatcaatatccacaaattgaatctcaaat 8569649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 24198932 - 24199006
Alignment:
Q  504 gagtaaatggtcattttagtctttgactatacatctcgctatcacaaaggtttctgacttagtattaaatacaaa 578  Q
    ||||||||| ||||||| |||| ||| | ||||||||||| |||||||||| | ||| | || ||||||||||||    
T  24198932 gagtaaatgatcatttttgtctctgattctacatctcgctgtcacaaaggtctttgattcaggattaaatacaaa 24199006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 662 - 719
Target Start/End: Complemental strand, 28006529 - 28006471
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaa 719  Q
    |||||||||| |||||| | |||||||||||| ||||||  ||||||||||||||||||    
T  28006529 taaagtgaaaatagaaagtggtcactttggtcactgaactaaaaatcaatatccccaaa 28006471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 662 - 719
Target Start/End: Complemental strand, 28063832 - 28063774
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaa 719  Q
    |||||||||| |||||| | |||||||||||| ||||||  ||||||||||||||||||    
T  28063832 taaagtgaaaatagaaagtggtcactttggtcactgaactaaaaatcaatatccccaaa 28063774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 31075239 - 31075170
Alignment:
Q  646 gaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccc 715  Q
    ||||||||||| ||  |||| |||||||||||| | ||||||||||| ||||||| |||||||||||||||    
T  31075239 gaggtgtcacaaggactaaa-tgaaagtagaaagtggtcactttggtccctgaactgaaaatcaatatccc 31075170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 708
Target Start/End: Complemental strand, 12637712 - 12637647
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatca 708  Q
    |||| |||||||||||  |||||||||||||||| ||  |||||||||| ||||||| ||||||||    
T  12637712 atgatgtgtcacatggactaaagtgaaagtagaatatgatcactttggtccctgaactgaaaatca 12637647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 650 - 781
Target Start/End: Original strand, 2677094 - 2677226
Alignment:
Q  650 tgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatt 748  Q
    ||||||||||  |||||||||||||||||||  |||||||| ||| |||||  |||||||||||||| ||||| | ||| |||| |||| |||  |||||    
T  2677094 tgtcacatggactaaagtgaaagtagaaaatgatcactttgttccctgaactaaaaatcaatatccctaaattaaatctcaaatccctagatctcgaatt 2677193  T
Q  749 taatcctcaaattcctaaatctcatctaattcc 781  Q
    |||||||||||| ||||||||||||||||||||    
T  2677194 taatcctcaaatccctaaatctcatctaattcc 2677226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 643 - 800
Target Start/End: Complemental strand, 385601 - 385445
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||| ||||| | || |||||||| ||||||||||| |||||||| |||| |||||||||| |||||||||| || |||| ||| |||| | ||||||    
T  385601 catgagatgtcatagggattaaagtgcaagtagaaaatggtcactttagtccctgaaccgaaagtcaatatccc-aagttgaatctcaaatccttaaatc 385503  T
Q  742 ctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
      |||||||||| |||||| ||||||||||||  |||||| ||||||| ||||||||||    
T  385502 tcgaatttaatcatcaaatccctaaatctcat-aaattcccttttttgttcaaaatcaa 385445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 644 - 780
Target Start/End: Original strand, 7258427 - 7258559
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  7258427 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 7258526  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaattc 780  Q
         ||||  ||||||| ||||||| |||||||||||    
T  7258527 -----ttaaatctcaaatccctaaatgtcatctaattc 7258559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 44334421 - 44334323
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||| ||||||||||   |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | | |||| ||||||||    
T  44334421 atgagatgtcacatggaccaaagtgaaagtagaaaatagtcactttggtccatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 44334323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 33607465 - 33607368
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||| ||||  ||||||||||||| ||| | |||||||||||||| | ||| |||||||||||||||||||||| |||||||| |||||||    
T  33607465 atgaggtgtcaaatggactaaagtgaaagtaaaaattggtcactttggtccttggaccaaaaatcaatatccccaaattgaatcttaaatccctaaat 33607368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 771
Target Start/End: Original strand, 384991 - 385118
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||||| | |  ||||||||||||||||||||||||||||| ||  |||| ||||||||||||| |||||||| | ||| |||||| |||||||    
T  384991 atgaggtgtcacgttgactaaagtgaaagtagaaaattgtcactttgatctatgaatcgaaaatcaatat-cccaaattaaatctcaaattcttaaatcc 385089  T
Q  743 tgaatttaatcctcaaattcctaaatctc 771  Q
     ||||||||| | ||||| | ||||||||    
T  385090 cgaatttaattcacaaatccttaaatctc 385118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 8048735 - 8048655
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||| |||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||    
T  8048735 atgatgtgtcacatggactaaagtgaaagtagaaaatggtcactttggtccctgaaccgaaaattaatatccacaaattga 8048655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 644 - 743
Target Start/End: Original strand, 44333289 - 44333389
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   || ||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  44333289 atgaggtgtcacagggaccaacgtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 44333388  T
Q  743 t 743  Q
    |    
T  44333389 t 44333389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 662 - 740
Target Start/End: Complemental strand, 12223632 - 12223553
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||| |||| |||||||    
T  12223632 taaagtgaaagtaaaaaattgtcactttgatccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaat 12223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 800
Target Start/End: Complemental strand, 45584448 - 45584316
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaatt 761  Q
    |||||||| ||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| | | ||||||||||||||     ||||  |||||||     
T  45584448 aaagtgaatgtagaaaatggtcactttggtccctgaacc-aaaatcaatattcccaaattgaatatcaaattcctaaatcc-----ttaaatctcaaatc 45584355  T
Q  762 cctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
    ||||||| ||||||||||   ||||||| ||||||||||    
T  45584354 cctaaatgtcatctaattatcttttttgatcaaaatcaa 45584316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 10899044 - 10898947
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||   |||| ||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| | | ||||||||||||    
T  10899044 atgaggtgtcacagggaccaaagagaaagtagaaaatggtcactttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaat 10898947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 48788643 - 48788546
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| ||||||||||| | |||||||| | | ||||||||||||    
T  48788643 atgaggtgtcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcacaaattgaatatcaaattcctaaat 48788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 760
Target Start/End: Original strand, 24934954 - 24935066
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaat 747  Q
    ||||||||||   ||||||||||||||||||| ||||||||| ||| | |||||||||||||||| || ||||||| ||| |||| |||||| || ||||    
T  24934954 gtgtcacatgaactaaagtgaaagtagaaaatggtcactttgatccctaaaccgaaaatcaatattcctaaattgaatctcaaatccctaaaccccgaat 24935053  T
Q  748 ttaatcctcaaat 760  Q
     |||||| |||||    
T  24935054 ataatccccaaat 24935066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 620 - 801
Target Start/End: Original strand, 39824277 - 39824456
Alignment:
Q  620 aaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaa 718  Q
    |||| ||||||| |||  |||| ||||| |||||||| ||  ||||||||||||||||||| |||||||| | || ||||    |||||||||| |||||    
T  39824277 aaatgttttgtgctgacaaggtgcatgaagtgtcacagggactaaagtgaaagtagaaaatggtcactttagcccctgaat---aaatcaatattcccaa 39824373  T
Q  719 attgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaaa 801  Q
    ||||| | | |||| | ||||| || |||||||||||||||| | |||||||||| ||||||    ||||| |||||||||||    
T  39824374 attgaatttcaaatccataaattctaaatttaatcctcaaatccttaaatctcatttaattcacccttttgttcaaaatcaaa 39824456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 800
Target Start/End: Complemental strand, 24935645 - 24935508
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaat 760  Q
    ||||||||||||| |||| |||||||||| ||| |||||  ||||||| |||| ||||||||| ||| ||||||||||||||  ||||||||| || |||    
T  24935645 taaagtgaaagtaaaaaaatgtcactttgatccctgaactaaaaatca-tatcaccaaattgaatctcaaattcctaaatcccaaatttaatcttc-aat 24935548  T
Q  761 tcctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
     ||||||| || | ||||||| | ||||| ||||||||||    
T  24935547 ccctaaatatcttttaattccctcttttgttcaaaatcaa 24935508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 663 - 741
Target Start/End: Complemental strand, 35729038 - 35728959
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||| | |||||| ||||||||    
T  35729038 aaagtgaaagtagaaagtggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatattaaatccctaaatc 35728959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 30924980 - 30924882
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||  | | |||||||||||||||||| ||||||||| ||  |||||| |||||||||||||||||||||| | | |||| ||||||||    
T  30924980 atgaggtgtcacagtgatcaaagtgaaagtagaaaatggtcactttgatctatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 30924882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 43461688 - 43461590
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||   ||||||||||||| ||||| ||||||||| | |||||||| ||||||||||||||  |||||| ||| |||| ||||||||    
T  43461688 atgaggtgtcacatgaactaaagtgaaagtaaaaaatggtcactttgatccctgaaccaaaaatcaatatccctcaattgaatctcaaatccctaaatc 43461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 739
Target Start/End: Complemental strand, 7509424 - 7509327
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaatt-gtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaa 739  Q
    |||| |||||| ||||  |||||||||||||||||| | ||||||||||||| | |||| |||||||||||||||||||||| ||| |||| ||||||    
T  7509424 atgatgtgtcatatggactaaagtgaaagtagaaaaatagtcactttggtccctaaaccaaaaatcaatatccccaaattgaatctcaaatccctaaa 7509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 662 - 741
Target Start/End: Complemental strand, 6680466 - 6680386
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||||||||| |||| ||| |||| | |||| |||||||||||||||||||||| | |||||||| ||||||    
T  6680466 taaagtgaaagtagaaaatagtcattttagtccctaaaccaaaaatcaatatccccaaattgaattttaaattcataaatc 6680386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 48647414 - 48647334
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||   |||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||    
T  48647414 atgaggtgtcacaaggaccaaagtgaaagtagaaaatggtcactttcgtccctgaaccaaaaatcaatatgcccaaattga 48647334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 7259655 - 7259558
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   ||||||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||||||| | | |||| ||||||||    
T  7259655 atgaggtgtcacaaggaccaaagtgaaa-tagaaaatggtcactttggtccctgaaccaaaaattaatatccccaaattgaatatcaaatccctaaatc 7259558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 723
Target Start/End: Complemental strand, 42478222 - 42478161
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||| ||||||||||||| |||||  ||||||||||||||| ||||||    
T  42478222 aaagtgaaagtagaaaatggtcactttggtccatgaacaaaaaatcaatatcccctaattga 42478161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 43457620 - 43457717
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||  |  ||||||||||||| ||||| |||||||||||||   ||| |||||||||||||| ||||||| ||| |||| | ||||||    
T  43457620 atgaggtgtcacagagactaaagtgaaagtaaaaaatggtcactttggtccctgaccaaaaatcaatatccctaaattgaatctcaaatccttaaatc 43457717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 581
Target Start/End: Original strand, 24934799 - 24934879
Alignment:
Q  501 tttgagtaaatggtcattttagtctttgactatacatctcgctatcacaaaggtttctgacttagtattaaatacaaaata 581  Q
    |||||||||||||||| ||| |||  | ||| | ||| ||||| |||||||||| |||||||||| |||||||||||||||    
T  24934799 tttgagtaaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaaata 24934879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 800
Target Start/End: Original strand, 12286820 - 12286918
Alignment:
Q  702 aaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
    |||||||||||| ||||||| | ||| ||||  |||||||| |||||||||||  |||| || |||||||||||||||   | ||||| ||||||||||    
T  12286820 aaaatcaatatctccaaattaaatctcaaatctctaaatcccgaatttaatccctaaatccccaaatctcatctaattttctattttgttcaaaatcaa 12286918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 797
Target Start/End: Original strand, 42477532 - 42477681
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   ||||||||||||||||||  |||||||||| |||||||| ||||  ||||| |||| ||||| | | ||||||||||||      
T  42477532 atgaggtgtcacagggaccaaagtgaaagtagaaaatgatcactttggtccctgaaccaaaaactaatattcccatattgaatatcaaattcctaaat-- 42477629  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
       | ||||  ||||||| ||||||| |||||||||||  | ||||| |||||||    
T  42477630 ---acttaaatctcaaatccctaaatgtcatctaattctctcttttgttcaaaat 42477681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 688
Target Start/End: Complemental strand, 9365244 - 9365199
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactt 688  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||    
T  9365244 catgaggtgtcacacagattaaagtgaaagtagaaaattgtcactt 9365199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 742
Target Start/End: Original strand, 10894497 - 10894593
Alignment:
Q  646 gaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||||||    |||||||||||||||||| |||||||| || |||| ||| |||||| ||||||||||||||| | | |||| |||||||||    
T  10894497 gaggtgtcacatgcaccaaagtgaaagtagaaaatggtcactttagtccctggaccaaaaatc-atatccccaaattgaatatcaaatccctaaatcc 10894593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 35727850 - 35727947
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||   ||||||| |||||||||| ||||||||| ||| | |||| ||||||||||| |||||||||| | | ||||| ||||||    
T  35727850 atgaggtgtcacagggaccaaagtgatagtagaaaatggtcactttgatcctttaaccaaaaatcaatattcccaaattgaatatcaaatttctaaat 35727947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 741
Target Start/End: Original strand, 8047005 - 8047085
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||| |||||||||||||| ||||||||| ||| |||||  | ||| |||||||||||||||| | |||||| ||||||||    
T  8047005 taaattgaaagtagaaaatagtcactttgatccttgaacaaacaattaatatccccaaattgaattttaaatccctaaatc 8047085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 715
Target Start/End: Original strand, 24287652 - 24287724
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccc 715  Q
    ||||||||||||| ||  ||||||||||||||||||| ||| |||| || |||||||| ||||| ||||||||    
T  24287652 atgaggtgtcacagggactaaagtgaaagtagaaaatggtcgctttagtccctgaaccaaaaatgaatatccc 24287724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 719
Target Start/End: Original strand, 48777409 - 48777484
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttg-gtcctgaaccgaaaatcaatatccccaaa 719  Q
    ||||||||||||| ||   ||||||||| |||||||| |||||||||  ||||||||| ||||||||||||||||||    
T  48777409 atgaggtgtcacagggaccaaagtgaaaatagaaaatggtcactttgattcctgaacc-aaaatcaatatccccaaa 48777484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 720
Target Start/End: Complemental strand, 8375556 - 8375497
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaat 720  Q
    ||||||||||||||||||| |||||||| || ||| |||| |||||||||||||| ||||    
T  8375556 taaagtgaaagtagaaaatggtcactttagtccctaaaccaaaaatcaatatccctaaat 8375497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 740
Target Start/End: Complemental strand, 34710336 - 34710257
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| |||||||| |||||| | |||||| | |||||||| |||| |||||||| | ||||| ||||||||    
T  34710336 taaagtgaaagtaaaaaattgttactttgatccctgaatcaaaaatcaacatcctcaaattgaattttaaaatcctaaat 34710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 721
Target Start/End: Original strand, 46286698 - 46286753
Alignment:
Q  667 tgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaatt 721  Q
    |||||||||||||| ||||||||| ||| |||||| ||||||||||| ||||||||    
T  46286698 tgaaagtagaaaatagtcactttgatccttgaaccaaaaatcaatattcccaaatt 46286753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 670 - 723
Target Start/End: Complemental strand, 19433860 - 19433806
Alignment:
Q  670 aagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||| |||| |||||| |||||||  ||||||||||||||||||||||    
T  19433860 aagtagaaaatggtcattttggttcctgaactaaaaatcaatatccccaaattga 19433806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 30917884 - 30917954
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcac-tttggtcctgaaccgaaaatcaatatc 713  Q
    ||||||||||||| ||  ||||||||||| ||||||||||||| ||||  || ||||||||||| ||||||    
T  30917884 atgaggtgtcacaaggactaaagtgaaagaagaaaattgtcacgtttgtcccagaaccgaaaattaatatc 30917954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 39708281 - 39708379
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttgg-tcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||| |||||||||||  |  |||||||||||||||| ||||||||||  ||| |||| ||||||||||| | |||||||| | | |||| ||||||||    
T  39708281 atgatgtgtcacatggactgtagtgaaagtagaaaatggtcactttggaccctaaaccaaaaatcaatattctcaaattgaatttcaaatccctaaatc 39708379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 644 - 797
Target Start/End: Complemental strand, 55389440 - 55389291
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | | ||||||||||||||    
T  55389440 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccgaaaatcaatattcccaaattgaatatcaaattcctaaatcc 55389341  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaat 797  Q
         ||||  ||||||| ||||||| |||||||||||  | ||||| |||||||    
T  55389340 -----ttaaatctcaaatccctaaatgtcatctaattctctcttttgttcaaaat 55389291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 697 - 800
Target Start/End: Complemental strand, 33837585 - 33837482
Alignment:
Q  697 aaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaa 796  Q
    |||||||||| |||||||| ||||||| |||||||| |||||||  |||||||||| |||||||  ||||||||||| ||||||| | ||||| ||||||    
T  33837585 aaccgaaaattaatatccctaaattgaatcttaaatccctaaattttgaatttaattctcaaatctctaaatctcatttaattccctcttttgttcaaaa 33837486  T
Q  797 tcaa 800  Q
    ||||    
T  33837485 tcaa 33837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 590 - 772
Target Start/End: Original strand, 40206000 - 40206178
Alignment:
Q  590 ttaaaaatttatgttaattgataaggtggaaaatattttgtgttgatcaggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcacttt 689  Q
    ||||||| ||||||||| | || |||||| |||| ||||||| |||  |||| | |||| ||||||| ||| ||||||||||||| ||||| ||||||||    
T  40206000 ttaaaaaattatgttaactaatgaggtggcaaatgttttgtgctgacaaggtgcgtgagttgtcacaagggctaaagtgaaagtataaaatggtcacttt 40206099  T
Q  690 ggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctca 772  Q
    ||||| |||||||||||||     | ||||||| | ||| |||| | ||||| | ||||||||||| ||||| |||||||||||    
T  40206100 ggtccttgaaccgaaaatc-----ctccaaattaaatctcaaatccttaaattccgaatttaatccccaaatccctaaatctca 40206178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 663 - 743
Target Start/End: Complemental strand, 53959052 - 53958971
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||| | | |||||||||||||||    
T  53959052 aaagtgaaagtagaaaattgtcactttggcccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcct 53958971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 662 - 740
Target Start/End: Complemental strand, 47075324 - 47075245
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |||||||| |||||||    
T  47075324 taaagttaaagtagaaaattgtcactttagtccctgaaccaaaaatcaatatccccaacttgaatcttaaatccctaaat 47075245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 52318288 - 52318190
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||| | | |||| ||||||||    
T  52318288 atgaggtgtcacaaggtccaaagtgaaagtagaaaatggtcactttggtccatgaaccaaaaaacaatatccccaaattgaatatcaaatccctaaatc 52318190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 740
Target Start/End: Original strand, 55388230 - 55388308
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| | | |||| |||||||    
T  55388230 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaat 55388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 732
Target Start/End: Original strand, 33427888 - 33427972
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcacttt-ggtcctgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    |||||||||||  |||||||||||||||||||| ||||||| |  |||||||| ||||||||||||||||| |||| ||||||||    
T  33427888 gtgtcacatggactaaagtgaaagtagaaaattatcactttagcccctgaaccaaaaatcaatatccccaacttgaatcttaaat 33427972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 663 - 741
Target Start/End: Original strand, 48808543 - 48808622
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | | |||| ||||||||    
T  48808543 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaatccctaaatc 48808622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 2591777 - 2591875
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattg-attcttaaattcctaaat 740  Q
    ||||||||||||||||  ||||||||||||| ||||||| ||||||||| |||||| | |||||||||||| | |||||| | ||| ||||||||||||    
T  2591777 atgaggtgtcacatggactaaagtgaaagtaaaaaattgccactttggtccctgaagcaaaaatcaatatctcgaaattgaaatctcaaattcctaaat 2591875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 36279104 - 36279202
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||| ||||  |||||||||||||||| | | |||| ||||||||    
T  36279104 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaaaaaatatccccaaattgaatatcaaatccctaaatc 36279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 48573137 - 48573234
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||| ||| |||||| ||||||||||| || ||||||| | | ||||||||||||    
T  48573137 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttgatccatgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaat 48573234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 740
Target Start/End: Complemental strand, 48809626 - 48809529
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||| | ||  ||||||||||||||||||| ||||||||| ||| |||||| ||||||||||| || ||||||| | | ||||||||||||    
T  48809626 atgaggtgtcagaaggactaaagtgaaagtagaaaatggtcactttgatccatgaaccaaaaatcaatattcctaaattgaatatcaaattcctaaat 48809529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 48574430 - 48574350
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||   |||||||||||||||||| |||||||| |||| |||||| ||| ||||||||||||||||||    
T  48574430 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttagtccttgaaccaaaattcaatatccccaaattga 48574350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 661 - 723
Target Start/End: Original strand, 33837332 - 33837395
Alignment:
Q  661 ttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||    
T  33837332 ttaaaatgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccagattga 33837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 17700671 - 17700768
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||||||| |||||||  ||||||||||  || ||||||| | | ||||||||||||    
T  17700671 atgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaacaaaaaatcaataatccaaaattgaatatcaaattcctaaat 17700768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 743
Target Start/End: Original strand, 53957844 - 53957925
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcct 743  Q
    ||||||||||||||||||  | ||||| |||| |||||| |||||||||||||||||||||| | | |||| ||||||||||    
T  53957844 aaagtgaaagtagaaaatgattactttagtccatgaaccaaaaatcaatatccccaaattgaatgtcaaatccctaaatcct 53957925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Original strand, 20464259 - 20464339
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||| |||||||||||||| ||||||||||||| |||| | ||||||||||||||||| ||||  || |||| ||||||||    
T  20464259 taaaatgaaagtagaaaatggtcactttggtccatgaatcaaaaatcaatatccccaatttgaacctcaaatccctaaatc 20464339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 743
Target Start/End: Complemental strand, 36280288 - 36280188
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    ||||||||||||| ||   ||| |||||| ||||||| |||||||| |||| | |||| ||||||||||| |||||||||| | | ||||||||||||||    
T  36280288 atgaggtgtcacacggaccaaaatgaaagaagaaaatggtcactttagtccctaaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatcc 36280189  T
Q  743 t 743  Q
    |    
T  36280188 t 36280188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Complemental strand, 36827408 - 36827328
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||| ||||||||  | | |||||||| |||| |||||||||||||||||||||||| | | |||||||||||||    
T  36827408 taaagtgaaaatagaaaatgattattttggtccctgaatcgaaaatcaatatccccaaattgaatttcaaattcctaaatc 36827328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 668 - 754
Target Start/End: Original strand, 40317946 - 40318033
Alignment:
Q  668 gaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcc 754  Q
    ||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||| | ||| |||| | |||| ||||||||||||||    
T  40317946 gaaagtagaaaatagtcactttggtccctgaatcaaaaatcaatattccaaaattaaatctcaaatccataaagcctgaatttaatcc 40318033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 772
Target Start/End: Original strand, 2323219 - 2323305
Alignment:
Q  687 tttggtcct-gaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctca 772  Q
    ||||||||| ||| ||||||| |||||||  ||||||| ||  |||| ||||||||| ||||| ||| |||||||||||||||||||    
T  2323219 tttggtccttgaatcgaaaattaatatccttaaattgaatcacaaatccctaaatcccgaattcaattctcaaattcctaaatctca 2323305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 712
Target Start/End: Complemental strand, 29188319 - 29188273
Alignment:
Q  667 tgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatat 712  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  29188319 tgaaagtagaaaattgtcactttgatccctgaaccgaaaatcaatat 29188273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 723
Target Start/End: Complemental strand, 19115133 - 19115058
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||  |||||||||||||||||||   |||||| |||| |||||  ||||||||||||||||| ||||    
T  19115133 gtgtcacatggactaaagtgaaagtagaaaataaccactttagtccatgaactaaaaatcaatatccccaatttga 19115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 693 - 723
Target Start/End: Original strand, 3671253 - 3671283
Alignment:
Q  693 cctgaaccgaaaatcaatatccccaaattga 723  Q
    |||||||||||||||||||||||||||||||    
T  3671253 cctgaaccgaaaatcaatatccccaaattga 3671283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 741
Target Start/End: Complemental strand, 47118037 - 47117945
Alignment:
Q  649 gtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||| ||  |||||||||| |||||| | |||||||| |||| |||||| ||||||||||||||||| |||| |||  ||| ||||||||    
T  47118037 gtgtcacaaggactaaagtgaaaatagaaa-tggtcactttagtccctgaaccaaaaatcaatatccccaacttgaatctcgaatccctaaatc 47117945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 646 - 772
Target Start/End: Complemental strand, 42391855 - 42391728
Alignment:
Q  646 gaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctg 744  Q
    ||||||||||||||  ||||||||||||||||||| |||||||| |||| |||||  |||||  |||||  |||||||| ||| |||| |||||||||||    
T  42391855 gaggtgtcacatggactaaagtgaaagtagaaaatggtcactttagtccctgaactaaaaattcatatcttcaaattgagtctcaaatccctaaatcctg 42391756  T
Q  745 aatttaatcctcaaattcctaaatctca 772  Q
    |||| ||||| ||||| |||||||||||    
T  42391755 aattaaatccccaaatccctaaatctca 42391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 47600553 - 47600455
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgaccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaatt 106  Q
    |||||||| ||||| |||||||||||   || |||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  47600553 gattatgttaacactgcaatggagcgactcctcaaagcagatgtcaaatatcgatttgtgattgacattggaaacactctcaaaccaagctcttaaatt 47600455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 643 - 769
Target Start/End: Complemental strand, 25810385 - 25810257
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcct-gaaccgaaaatcaatatc--cccaaattgattcttaaattcctaaa 739  Q
    |||||||||||||||||  ||||||||||||| ||||| |||| ||||||| | |||| |||||||||||||  ||||| |||| |||||||| ||||||    
T  25810385 catgaggtgtcacatggactaaagtgaaagtataaaatagtca-tttggtctttgaactgaaaatcaatatcttcccaagttgaatcttaaatccctaaa 25810287  T
Q  740 tcctgaatttaatcctcaaattcctaaatc 769  Q
    ||  ||||||||||||||||| | ||||||    
T  25810286 tctcgaatttaatcctcaaatccttaaatc 25810257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 663 - 797
Target Start/End: Complemental strand, 47878436 - 47878306
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaatt 761  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||| | | |||||||||||| |     ||||  | |||||     
T  47878436 aaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaattc-----ttaaatcacaaatc 47878342  T
Q  762 cctaaatctcatctaattccgttttttgctcaaaat 797  Q
    |||||||||||||||||||  | |||||||||||||    
T  47878341 cctaaatctcatctaattctctcttttgctcaaaat 47878306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 741
Target Start/End: Complemental strand, 20599857 - 20599759
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||  |||| |||||||| ||||| ||||||||||||| |||||| ||||| ||||| |||||||||| ||| |||||||||||||    
T  20599857 atgaggtgtcacagggactaaaatgaaagtaaaaaatggtcactttggtccctgaaccaaaaattaatattcccaaattgaatctcaaattcctaaatc 20599759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 644 - 741
Target Start/End: Original strand, 42278201 - 42278299
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||||||||||| ||   ||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||||| | | |||| ||||||||    
T  42278201 atgaggtgtcacagggaccaaagtgaaactagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 42278299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 732
Target Start/End: Complemental strand, 4703168 - 4703079
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaat 732  Q
    ||||| ||||| ||||  ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||| ||| ||||    
T  4703168 atgagatgtcatatggactaaagtgaaagtataaaattgtcactttggtccctgacccaaaaatcaatatccccaaattgaatctcaaat 4703079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 740
Target Start/End: Original strand, 19050408 - 19050505
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    ||||||||||||||||  ||||||||||||| |||||  |||||||||||| |||| | |||||||||||||| ||||||| ||| |||| |||||||    
T  19050408 atgaggtgtcacatggactaaagtgaaagtataaaatgatcactttggtccttgaagcaaaaatcaatatccctaaattgaatctcaaatccctaaat 19050505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 2786395 - 2786465
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatc 713  Q
    |||| |||||| |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  2786395 atgaagtgtcatatggattaaagtaaaagtagaaaatggtcactttggtctctgaaccgaaaatcaatatc 2786465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 664 - 740
Target Start/End: Complemental strand, 53771021 - 53770944
Alignment:
Q  664 aagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| |||| ||| |||| |||||||    
T  53771021 aagtgaaagtagaaaattgtcactttagtctccgaaccaaaaatcaatatccccaacttgaatctcaaatccctaaat 53770944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 643 - 742
Target Start/End: Original strand, 4701934 - 4702034
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    ||||| |||||||||||  ||||||||||||||||||| ||||||||||| |||||| | ||| |||||||||  ||||||| ||| ||||  |||||||    
T  4701934 catgaagtgtcacatggactaaagtgaaagtagaaaatagtcactttggtccctgaaacaaaagtcaatatcctaaaattgaatctcaaatctctaaatc 4702033  T
Q  742 c 742  Q
    |    
T  4702034 c 4702034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 752
Target Start/End: Original strand, 38216617 - 38216725
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||| ||||||  |||||||||||||  |||| ||| ||||||| |||||| ||| |||||||||||| ||||||| | | |||| ||||||||    
T  38216617 catgaggtgttacatggactaaagtgaaagta--aaatggtccctttggttcctgaatcgataatcaatatcccaaaattgaatatcaaatccctaaatc 38216714  T
Q  742 ctgaatttaat 752  Q
    | |||||||||    
T  38216715 ccgaatttaat 38216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 741
Target Start/End: Original strand, 47874734 - 47874813
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatc 741  Q
    |||||||||||| ||||| ||||||||||||| |||||| |||||||||||||| ||||||| | | |||| ||||||||    
T  47874734 aaagtgaaagtataaaatggtcactttggtccttgaaccaaaaatcaatatcccaaaattgaatatcaaatccctaaatc 47874813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 720
Target Start/End: Original strand, 44158699 - 44158753
Alignment:
Q  667 tgaaagtag-aaaattgtcactttggtcctgaaccgaaaatcaatatccccaaat 720  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||    
T  44158699 tgaaagtagtaaaatggtcactttagtcctgaaccaaaaatcaatatccccaaat 44158753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 715
Target Start/End: Complemental strand, 24746026 - 24745954
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccc 715  Q
    |||||||||||||  |  |||||||||| ||||||||| |||||||||| ||||||||| |||| ||||||||    
T  24746026 atgaggtgtcacacagactaaagtgaaaatagaaaattatcactttggtccctgaaccggaaattaatatccc 24745954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 723
Target Start/End: Complemental strand, 39870625 - 39870545
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattga 723  Q
    ||||||||||||| ||  |||||||| ||||||||| ||||||||| || || ||||| |||||||| ||| |||||||||    
T  39870625 atgaggtgtcacaaggaataaagtgagagtagaaaaatgtcactttcgtccccgaaccaaaaatcaaaatctccaaattga 39870545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 663 - 720
Target Start/End: Original strand, 6039312 - 6039370
Alignment:
Q  663 aaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaat 720  Q
    |||||||  ||||||||| ||||||||| ||| |||||||||||| |||||||||||||    
T  6039312 aaagtgagtgtagaaaatggtcactttgctccctgaaccgaaaattaatatccccaaat 6039370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 701 - 779
Target Start/End: Original strand, 25809656 - 25809734
Alignment:
Q  701 gaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaatt 779  Q
    ||||||||||||| | ||||| | ||| |||| | |||||||  ||||||||||||||   ||||||||||||||||||    
T  25809656 gaaaatcaatatctcaaaattaaatctaaaatccttaaatcccaaatttaatcctcaagcccctaaatctcatctaatt 25809734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 53770331 - 53770405
Alignment:
Q  504 gagtaaatggtcattttagtctttgactatacatctcgctatcacaaaggtttctgacttagtattaaatacaaa 578  Q
    ||||||||||||| |||||||| ||||| | || |||||  ||||| ||||| |||||| || ||||||||||||    
T  53770331 gagtaaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaa 53770405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 714
Target Start/End: Original strand, 32244464 - 32244517
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatcc 714  Q
    ||||||||||||| ||||| ||||||||| || ||| |||||||||||||||||    
T  32244464 taaagtgaaagtaaaaaatggtcactttgatctctgcaccgaaaatcaatatcc 32244517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 689
Target Start/End: Original strand, 50694901 - 50694946
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcacttt 689  Q
    ||||||||||||| || | ||| |||||||||||||||||||||||    
T  50694901 atgaggtgtcacagggatcaaaatgaaagtagaaaattgtcacttt 50694946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 643 - 800
Target Start/End: Original strand, 8671 - 8828
Alignment:
Q  643 catgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||||||||||||  ||||||| ||||| | |||  |||||||  || |||||| ||||||||||||||||| || | ||| |||| ||||||| |    
T  8671 catgaggtgtcacatggaataaagtggaagtaaagaatgttcactttaatcgtgaaccaaaaatcaatatccccaacttaaatctcaaatccctaaattc 8770  T
Q  743 tgaatttaatcctcaaattcctaaatctcatctaattccgttttttgctcaaaatcaa 800  Q
    | ||||||||||||||||  |||||| |||||| ||||  ||||||| | ||||||||    
T  8771 taaatttaatcctcaaatctctaaatttcatctgattctcttttttgttgaaaatcaa 8828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 638 - 769
Target Start/End: Original strand, 3113 - 3243
Alignment:
Q  638 aggtacatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcct 736  Q
    |||| |||||||||||||| || |||||||| ||||||||||| |||| ||||||| ||||| |||||||||||||| ||  ||||| ||| |||| |||    
T  3113 aggtgcatgaggtgtcacaaggattaaagtggaagtagaaaatggtcattttggtctctgaatcgaaaatcaatatctcc--attgaatctaaaatccct 3210  T
Q  737 aaatcctgaatttaatcctcaaattcctaaatc 769  Q
    ||||||  |||||| || |||||| ||||||||    
T  3211 aaatcccaaatttattcttcaaatccctaaatc 3243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 662 - 769
Target Start/End: Original strand, 1875 - 1981
Alignment:
Q  662 taaagtgaaagtagaaaattgtcactttggtc-ctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaat 760  Q
    ||||||| ||||||||||| |||| ||||||| ||||| |||||||||||||| ||  ||||| ||| |||| |||||||||  |||||| || ||||||    
T  1875 taaagtggaagtagaaaatagtcattttggtctctgaatcgaaaatcaatatctcc--attgaatctaaaatccctaaatcccaaatttattcttcaaat 1972  T
Q  761 tcctaaatc 769  Q
     ||||||||    
T  1973 ccctaaatc 1981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 644 - 742
Target Start/End: Complemental strand, 6201 - 6105
Alignment:
Q  644 atgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcc 742  Q
    |||||||| |||||||   |||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||  | ||| ||||||||||||||    
T  6201 atgaggtgacacatgg---aaagtgaaagtaaaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaatataatctcaaattcctaaatcc 6105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 743
Target Start/End: Original strand, 5767 - 5869
Alignment:
Q  642 acatgaggtgtcacatgggttaaagtgaaagtagaaaattgtcactttggt-cctgaaccgaaaatcaatatccccaaattgattcttaaattcctaaat 740  Q
    |||||||||||||||| |  ||||||||||||| ||| | ||||||||| | |||||||| ||||||||||||| |||||| | ||| |||| ||||| |    
T  5767 acatgaggtgtcacatagactaaagtgaaagtaaaaagtggtcactttgatccctgaaccaaaaatcaatatcctcaaattaaatctcaaatccctaatt 5866  T
Q  741 cct 743  Q
    |||    
T  5867 cct 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 667 - 769
Target Start/End: Complemental strand, 36473 - 36370
Alignment:
Q  667 tgaaagtagaaaattgtcactttggtcc-tgaaccgaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattccta 765  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||  |||||||  || |||| |||||| ||  |||| ||||| ||||||||||    
T  36473 tgaaagtagaaaatggtcactttgatccctgaaccgaaaatcaatatcctaaaattgaaactcaaatccctaaaacccaaattaaatccccaaattccta 36374  T
Q  766 aatc 769  Q
    ||||    
T  36373 aatc 36370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 779
Target Start/End: Complemental strand, 93029 - 92951
Alignment:
Q  701 gaaaatcaatatccccaaattgattcttaaattcctaaatcctgaatttaatcctcaaattcctaaatctcatctaatt 779  Q
    ||||||||||||||||||||| | ||| |||| | |||||||  ||||||||||||||   |||| |||||||||||||    
T  93029 gaaaatcaatatccccaaattaaatctaaaatccttaaatcccaaatttaatcctcaagcccctatatctcatctaatt 92951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University