View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731-Insertion-7 (Length: 840)

Name: NF4731-Insertion-7
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731-Insertion-7
NF4731-Insertion-7
[»] scaffold0259 (2 HSPs)
scaffold0259 (262-837)||(19123-19687)
scaffold0259 (8-171)||(19778-19941)
[»] chr6 (12 HSPs)
chr6 (17-171)||(14829754-14829908)
chr6 (762-840)||(31989779-31989857)
chr6 (524-561)||(5008844-5008881)
chr6 (527-572)||(32193881-32193926)
chr6 (527-568)||(33824879-33824920)
chr6 (524-556)||(14515311-14515343)
chr6 (262-318)||(14829580-14829636)
chr6 (526-561)||(26521136-26521171)
chr6 (527-569)||(8138480-8138522)
chr6 (527-569)||(18256880-18256922)
chr6 (526-560)||(26522478-26522512)
chr6 (527-560)||(20720803-20720836)
[»] chr7 (18 HSPs)
chr7 (708-836)||(49067279-49067407)
chr7 (524-569)||(21099792-21099837)
chr7 (527-567)||(8227348-8227388)
chr7 (525-560)||(1398417-1398452)
chr7 (530-569)||(42336067-42336106)
chr7 (527-569)||(25246768-25246810)
chr7 (527-569)||(44558796-44558838)
chr7 (527-560)||(4340133-4340166)
chr7 (524-569)||(5526722-5526767)
chr7 (527-560)||(7872770-7872803)
chr7 (527-560)||(8615029-8615062)
chr7 (527-560)||(18714454-18714487)
chr7 (527-560)||(19982110-19982143)
chr7 (527-560)||(21050244-21050277)
chr7 (527-560)||(24991787-24991820)
chr7 (527-560)||(33610947-33610980)
chr7 (527-560)||(39926560-39926593)
chr7 (527-560)||(46987092-46987125)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-116)||(117269-117368)
[»] chr4 (17 HSPs)
chr4 (527-573)||(33413352-33413398)
chr4 (527-569)||(14577529-14577571)
chr4 (527-572)||(8027419-8027464)
chr4 (527-567)||(18915068-18915108)
chr4 (518-569)||(14136088-14136139)
chr4 (527-566)||(34247440-34247479)
chr4 (527-569)||(7230277-7230319)
chr4 (527-569)||(36203233-36203275)
chr4 (527-569)||(39842034-39842076)
chr4 (527-560)||(12439670-12439703)
chr4 (527-560)||(22279542-22279575)
chr4 (527-572)||(38812871-38812916)
chr4 (527-560)||(42756128-42756161)
chr4 (527-560)||(46676520-46676553)
chr4 (527-560)||(49949340-49949373)
chr4 (527-572)||(56204941-56204986)
chr4 (527-560)||(56551614-56551647)
[»] chr1 (16 HSPs)
chr1 (527-567)||(24124852-24124892)
chr1 (527-569)||(31890771-31890813)
chr1 (527-560)||(34808585-34808618)
chr1 (524-560)||(3886709-3886745)
chr1 (527-561)||(2817395-2817429)
chr1 (526-560)||(32030926-32030960)
chr1 (527-561)||(34253735-34253769)
chr1 (527-569)||(34733397-34733439)
chr1 (527-569)||(44641524-44641566)
chr1 (527-569)||(49183170-49183212)
chr1 (527-572)||(3509963-3510008)
chr1 (527-560)||(17283957-17283990)
chr1 (527-560)||(38448888-38448921)
chr1 (527-560)||(41926828-41926861)
chr1 (527-560)||(50638938-50638971)
chr1 (524-569)||(51127909-51127954)
[»] chr2 (25 HSPs)
chr2 (527-570)||(43117212-43117255)
chr2 (522-572)||(2661065-2661115)
chr2 (527-560)||(24393251-24393284)
chr2 (527-567)||(12124544-12124584)
chr2 (527-567)||(28771581-28771621)
chr2 (527-567)||(39761437-39761477)
chr2 (527-569)||(3197101-3197143)
chr2 (526-560)||(7413210-7413244)
chr2 (527-569)||(10332297-10332339)
chr2 (530-572)||(19976147-19976189)
chr2 (527-569)||(20517019-20517061)
chr2 (527-569)||(28277698-28277740)
chr2 (527-569)||(34464431-34464473)
chr2 (527-561)||(35685083-35685117)
chr2 (527-572)||(8387907-8387952)
chr2 (527-560)||(12124690-12124723)
chr2 (527-560)||(18231495-18231528)
chr2 (527-560)||(19179072-19179105)
chr2 (527-560)||(20120743-20120776)
chr2 (527-560)||(24593382-24593415)
chr2 (527-568)||(25186264-25186305)
chr2 (527-560)||(29350067-29350100)
chr2 (527-560)||(39068730-39068763)
chr2 (527-560)||(40099405-40099438)
chr2 (527-572)||(44496722-44496767)
[»] scaffold0005 (1 HSPs)
scaffold0005 (527-569)||(239804-239846)
[»] chr5 (16 HSPs)
chr5 (527-573)||(16133087-16133133)
chr5 (524-572)||(17672319-17672367)
chr5 (529-571)||(6226328-6226370)
chr5 (527-569)||(17861976-17862018)
chr5 (527-561)||(18147723-18147757)
chr5 (527-569)||(36321516-36321558)
chr5 (527-569)||(40445980-40446022)
chr5 (527-560)||(5846035-5846068)
chr5 (527-572)||(8545011-8545056)
chr5 (524-569)||(10199016-10199061)
chr5 (527-560)||(11844460-11844493)
chr5 (527-572)||(21308963-21309008)
chr5 (527-572)||(21316876-21316921)
chr5 (527-572)||(23118073-23118118)
chr5 (524-561)||(37054288-37054325)
chr5 (527-572)||(39610363-39610408)
[»] chr8 (11 HSPs)
chr8 (527-567)||(42208491-42208531)
chr8 (526-560)||(1244726-1244760)
chr8 (527-569)||(8717497-8717539)
chr8 (527-569)||(17704010-17704052)
chr8 (527-560)||(8910003-8910036)
chr8 (526-559)||(19488307-19488340)
chr8 (527-560)||(19778071-19778104)
chr8 (527-560)||(30623299-30623332)
chr8 (530-567)||(35372123-35372160)
chr8 (527-572)||(37750021-37750066)
chr8 (529-570)||(41162662-41162703)
[»] scaffold2055 (1 HSPs)
scaffold2055 (513-560)||(1043-1090)
[»] scaffold0180 (1 HSPs)
scaffold0180 (530-572)||(17726-17768)
[»] chr3 (20 HSPs)
chr3 (527-569)||(1149091-1149133)
chr3 (527-569)||(4216421-4216463)
chr3 (526-560)||(13992677-13992711)
chr3 (527-569)||(16980376-16980418)
chr3 (527-569)||(21331439-21331481)
chr3 (527-569)||(47099350-47099392)
chr3 (527-569)||(52904165-52904207)
chr3 (527-561)||(54230121-54230155)
chr3 (522-559)||(2151067-2151104)
chr3 (527-572)||(3755333-3755378)
chr3 (527-572)||(5117202-5117247)
chr3 (527-560)||(8113584-8113617)
chr3 (527-560)||(10926475-10926508)
chr3 (527-560)||(30200832-30200865)
chr3 (527-560)||(35191839-35191872)
chr3 (526-559)||(39822193-39822226)
chr3 (527-560)||(45096032-45096065)
chr3 (527-560)||(45254237-45254270)
chr3 (527-560)||(46469283-46469316)
chr3 (527-560)||(52119382-52119415)
[»] scaffold0524 (1 HSPs)
scaffold0524 (524-561)||(1239-1276)
[»] scaffold0004 (1 HSPs)
scaffold0004 (527-560)||(91584-91617)


Alignment Details
Target: scaffold0259 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 262 - 837
Target Start/End: Complemental strand, 19687 - 19123
Alignment:
Q  262 ctatggatttgtgagatttatgtgggtgattgtaatgttttatatatttcttccaaagctactttaaaatttatccagtttacatcttcataaaagagaa 361  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19687 ctatgaatttgtgagatttatgtgggtgattgtaatgttttatatatttcttccaaagctactttaaaatttagccagtttacatcttcataaaagagaa 19588  T
Q  362 aaatctatgtaaattgagaaacacctatcatctttacggaggtagagcaattgtggaacctaatgtataatgacaaatatgtcacagttatatcaatctc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19587 aaatctatgtaaattgagaaacacctatcatctttacggaggtagagcaattgtggaacctaatgtataatgacaaatatgtcacagttatatcaatctc 19488  T
Q  462 tattggtaactttcnnnnnnnnnnnnnnnnngtggtggtccagctctgagccccgtaccttatatatatattatgcattgtccttaacaactgagctaaa 561  Q
    |||||||||||||                  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  19487 tattggtaacttt-----tttttttctttctgtggtggtcgagctttgagccccgtaccttatatatatattatgcattgtccttaccaactgatctaaa 19393  T
Q  562 atcacgagaacgctctctattggtaaccgacaacaaagaaacactaaccctttctttactgaatagacagttgagtattcaattttccaagtgaaatcat 661  Q
     ||||||| |||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19392 ctcacgaggacgctctctattggtaaccggcaacaaggagacactaaccctttctttattgaatagacagttgagtattcaattttccaagtgaaatcat 19293  T
Q  662 aaaaaatgtcgtttctactttaacgaatttcattgtcaaatattaatatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacactc 761  Q
    ||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19292 aaaaaatgtcgtttctactttaacgaatttcattgtca------aatatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacactt 19199  T
Q  762 ttcttcaatttcatgtttgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatcc 837  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19198 ttcttcaatttcatgtttgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatcc 19123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 19941 - 19778
Alignment:
Q  8 ttgttttctctctattagatcaacaagctatgcaacataaatcgattcaaaggatatcaagtattttctctgacgactgcgatttctttaatcaaatatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19941 ttgttttctctctattagatcaacaagctatgcaacataaatcgatacaaaggatatcaagtattttctctgacgactgcgatttctttaatcaaatatg 19842  T
Q  108 agaacatcaacaaagaaagatgaacagttctaatgttcgttttaatgaaggtaaaaataatgtg 171  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19841 agaacatcaagaaagaaagatgaactgttctaatgttcgttttaatgaaggtaaaaataatgtg 19778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 14829908 - 14829754
Alignment:
Q  17 ctctattagatcaacaagctatgcaacataaatcgattcaaaggatatcaagtattttctctgacgactgcgatttctttaatcaaatatgagaacatca 116  Q
    |||||||||||| ||||||| ||||| |||| |||||||||||| ||||| |||||||||| | ||||||| ||||||||||| ||||| ||||||||||    
T  14829908 ctctattagatctacaagctgtgcaatataactcgattcaaaggctatcatgtattttctccggcgactgcaatttctttaattaaatacgagaacatca 14829809  T
Q  117 acaaagaaagatgaacagttctaatgttcgttttaatgaaggtaaaaataatgtg 171  Q
    |||||||||||||||  ||||||||| || ||||||| |||||||||||||||||    
T  14829808 acaaagaaagatgaattgttctaatgatctttttaataaaggtaaaaataatgtg 14829754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 762 - 840
Target Start/End: Complemental strand, 31989857 - 31989779
Alignment:
Q  762 ttcttcaatttcatgtttgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatccatc 840  Q
    ||||||||||| |||||| |||| |||||  |||||||||||||||||||||||||||||||  | |||||||||||||    
T  31989857 ttcttcaatttgatgtttcaacttgagaacatattcactactaacatccatgttatttaaagcagttgcaatatccatc 31989779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 561
Target Start/End: Complemental strand, 5008881 - 5008844
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaa 561  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5008881 tatatatattatgcattgtccttaccaactgagctaaa 5008844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 32193881 - 32193926
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  32193881 atatattatgcattgttcttaccaactgagctaaactcacgagaac 32193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 33824920 - 33824879
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacga 568  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  33824920 atatattatgcattgtccttatcaactgagctaagatcacga 33824879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 14515311 - 14515343
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgag 556  Q
    |||||||||||||||||||||||||||||||||    
T  14515311 tatatatattatgcattgtccttaacaactgag 14515343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 14829636 - 14829580
Alignment:
Q  262 ctatggatttgtgagatttatgtgggtgattgtaatgttttatatatttcttccaaa 318  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||  |||||||||||||    
T  14829636 ctatgaatttgtgggatttatgtggctgattataatgttttaagtatttcttccaaa 14829580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 561
Target Start/End: Original strand, 26521136 - 26521171
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaaa 561  Q
    |||||||||||||||||||||| |||||||||||||    
T  26521136 tatatattatgcattgtccttaccaactgagctaaa 26521171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 8138480 - 8138522
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||| |||| ||||||||||||| |||||||    
T  8138480 atatattatgcattgttcttatcaactgagctaaattcacgag 8138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 18256922 - 18256880
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  18256922 atatattatgcattgtccttatcaactgagctaagctcacgag 18256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Complemental strand, 26522512 - 26522478
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||||||| ||||||||||||    
T  26522512 tatatattatgcattgtccttaccaactgagctaa 26522478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 20720803 - 20720836
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||| |||||||||||||||    
T  20720803 atatattatgcattgtccataacaactgagctaa 20720836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 708 - 836
Target Start/End: Original strand, 49067279 - 49067407
Alignment:
Q  708 tatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacactcttcttcaatttcatgtttgaactagagaatgtattcactactaaca 807  Q
    |||||| ||| |||| |||| |||| |||||||||||  || ||| ||||||| |||||||||||||||||| |||| |||||  |||||||| ||||||    
T  49067279 tatatataaacggaaggtactaatgaaaaatataccacctacctcagcacactgttcttcaatttcatgtttcaacttgagaacatattcactgctaaca 49067378  T
Q  808 tccatgttatttaaagttgctgcaatatc 836  Q
    ||||||||||||||||  |||||||||||    
T  49067379 tccatgttatttaaagccgctgcaatatc 49067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 21099792 - 21099837
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||    
T  21099792 tatatatattatgcattgtccataccaactgagctaaattcacgag 21099837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Complemental strand, 8227388 - 8227348
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  8227388 atatattatgcattgtccttatcaactgagctaaactcacg 8227348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 560
Target Start/End: Original strand, 1398417 - 1398452
Alignment:
Q  525 atatatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1398417 atatatattatgcattgtccttaccaactgagctaa 1398452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 42336106 - 42336067
Alignment:
Q  530 tattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  42336106 tattatgcattgtccttatcaactgagctaaattcacgag 42336067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 25246810 - 25246768
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
T  25246810 atatattatgcattgtctttatcaactgagctaaactcacgag 25246768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 44558796 - 44558838
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  44558796 atatattatgcattgtccataccaactgagctaaactcacgag 44558838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 4340166 - 4340133
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  4340166 atatattatgcattgtccttaccaactgagctaa 4340133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Complemental strand, 5526767 - 5526722
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| || ||||||||||||  |||||||    
T  5526767 tatatatattatgcattgtccataccaactgagctaagctcacgag 5526722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 7872770 - 7872803
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  7872770 atatattatgcattgtccttaccaactgagctaa 7872803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 8615062 - 8615029
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  8615062 atatattatgcattgtccttaccaactgagctaa 8615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 18714487 - 18714454
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  18714487 atatattatgcattgtccttaccaactgagctaa 18714454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 19982110 - 19982143
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||| ||||||||||||||||||||||||    
T  19982110 atatattattcattgtccttaacaactgagctaa 19982143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 21050244 - 21050277
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  21050244 atatattatgcattgtccttaccaactgagctaa 21050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 24991820 - 24991787
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  24991820 atatattatgcattgtccttaccaactgagctaa 24991787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 33610947 - 33610980
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||| |||||||||||||||    
T  33610947 atatattatgcattgtccgtaacaactgagctaa 33610980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 39926560 - 39926593
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  39926560 atatattatgcattgtccttatcaactgagctaa 39926593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 46987125 - 46987092
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  46987125 atatattatgcattgtccttaccaactgagctaa 46987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 117368 - 117269
Alignment:
Q  17 ctctattagatcaacaagctatgcaacataaatcgattcaaaggatatcaagtattttctctgacgactgcgatttctttaatcaaatatgagaacatca 116  Q
    ||||| |||||| ||||||||||||||| || |||||||||||| ||| || ||||||||||| |   || |||||||| ||| | ||||||||||||||    
T  117368 ctctactagatctacaagctatgcaacaaaactcgattcaaaggctattaaatattttctctggcagttgtgatttcttcaattatatatgagaacatca 117269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 33413352 - 33413398
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaacg 573  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  33413352 atatattatgcattgtccttatcaactgagctaaattcacgagaacg 33413398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 14577529 - 14577571
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  14577529 atatattatgcattgtccttaccaactgagctaaactcacgag 14577571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 8027419 - 8027464
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  8027419 atatattatgcattatccttaccaactgagctaaactcacgagaac 8027464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Original strand, 18915068 - 18915108
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  18915068 atatattatgcattgtccttaccaactgagctaaactcacg 18915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 569
Target Start/End: Complemental strand, 14136139 - 14136088
Alignment:
Q  518 accttatatatatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||  |||||||    
T  14136139 accttacatatatattatgcattgtctttatcaactgagctaagctcacgag 14136088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 34247479 - 34247440
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcac 566  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  34247479 atatattatgcattgtccttaccaactgagctaaactcac 34247440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 7230319 - 7230277
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  7230319 atatattatgcattgtccttaccaactgagctaagctcacgag 7230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 36203275 - 36203233
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  36203275 atatattatgcattgtccttatcaactgagctaagctcacgag 36203233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 39842034 - 39842076
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  39842034 atatattatgcattgtccttatcaactgagttaagatcacgag 39842076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 12439703 - 12439670
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  12439703 atatattatgcattgtccttatcaactgagctaa 12439670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 22279542 - 22279575
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  22279542 atatattatgcattgtccttaccaactgagctaa 22279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 38812871 - 38812916
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||||| || | ||||||||||| ||||||||||    
T  38812871 atatattatgcattgtccctaccgactgagctaaactcacgagaac 38812916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 42756128 - 42756161
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  42756128 atatattatgcattgtccttatcaactgagctaa 42756161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 46676520 - 46676553
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  46676520 atatattatgcattgtccttaccaactgagctaa 46676553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 49949373 - 49949340
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  49949373 atatattatgcattgtccttaccaactgagctaa 49949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 56204986 - 56204941
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||    
T  56204986 atatattatgcattgtccttaccaactgagttaaactcacaagaac 56204941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 56551614 - 56551647
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  56551614 atatattatgcattgtccttaccaactgagctaa 56551647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 567
Target Start/End: Original strand, 24124852 - 24124892
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  24124852 atatattatgcattgtccttaacaactgagctaaactcacg 24124892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 31890771 - 31890813
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  31890771 atatattatgcattgtccttaccaactgagctaaactcacgag 31890813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 34808585 - 34808618
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||||||||||||||||    
T  34808585 atatattatgcattgtccttaacaactgagctaa 34808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 3886709 - 3886745
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3886709 tatatatattatacattgtccttaacaactgagctaa 3886745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 2817395 - 2817429
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| |||||||||||||    
T  2817395 atatattatgcattgtccttaccaactgagctaaa 2817429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Original strand, 32030926 - 32030960
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||| |||||||||||||||    
T  32030926 tatatattatgcattgtccctaacaactgagctaa 32030960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 34253735 - 34253769
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| |||||||||||||    
T  34253735 atatattatgcattgtccttaccaactgagctaaa 34253769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 34733439 - 34733397
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  34733439 atatattatgcattgtccttaccaactgagctaagctcacgag 34733397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 44641566 - 44641524
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  44641566 atatattatgcattgtccatatcaactgagctaaactcacgag 44641524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 49183212 - 49183170
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||| |||||||||| ||||||||||||| |||||||    
T  49183212 atatattatgtattgtccttaccaactgagctaaactcacgag 49183170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 3509963 - 3510008
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||||| || ||||||||||||  ||||||||||    
T  3509963 atatattatgcattgtccataccaactgagctaagttcacgagaac 3510008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 17283990 - 17283957
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  17283990 atatattatgcattgtccttaccaactgagctaa 17283957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 38448888 - 38448921
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  38448888 atatattatgcattgtccttaccaactgagctaa 38448921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 41926861 - 41926828
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  41926861 atatattatgcattgtccttaccaactgagctaa 41926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 50638938 - 50638971
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  50638938 atatattatgcattgtccttaccaactgagctaa 50638971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 51127909 - 51127954
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||  |||||||||||| |||||||    
T  51127909 tatatatattatgcattgtccatattaactgagctaaactcacgag 51127954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 527 - 570
Target Start/End: Original strand, 43117212 - 43117255
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgaga 570  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  43117212 atatattatgcattgtccttaccaactgagctaaactcacgaga 43117255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 572
Target Start/End: Original strand, 2661065 - 2661115
Alignment:
Q  522 tatatatatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||||||||||||| |||||||| |||  ||||||||||    
T  2661065 tatatatatattatgcattgtccttaccaactgagttaagctcacgagaac 2661115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 24393284 - 24393251
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||||||||||||||||    
T  24393284 atatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Complemental strand, 12124584 - 12124544
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  12124584 atatattatgcattgtccttaccaactgagctaaactcacg 12124544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Complemental strand, 28771621 - 28771581
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  28771621 atatattatgcattgtccttaccaactgagctaaactcacg 28771581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Complemental strand, 39761477 - 39761437
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  39761477 atatattatgcattgtccttatcaactgagctaaactcacg 39761437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 3197101 - 3197143
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  3197101 atatattatgcattgtccctaccaactgagctaaactcacgag 3197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Original strand, 7413210 - 7413244
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||||||| ||||||||||||    
T  7413210 tatatattatgcattgtccttaccaactgagctaa 7413244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 10332297 - 10332339
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  10332297 atatattatgcattgtccttatcaactgagctaagctcacgag 10332339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 572
Target Start/End: Complemental strand, 19976189 - 19976147
Alignment:
Q  530 tattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||| || ||||||||||||| ||||||||||    
T  19976189 tattatgcattgtccataccaactgagctaaactcacgagaac 19976147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 20517061 - 20517019
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||| |||| ||||||||||||| |||||||    
T  20517061 atatattatgcattgttcttaccaactgagctaaactcacgag 20517019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 28277698 - 28277740
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgag 28277740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 34464431 - 34464473
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  34464431 atatattatgcattgtccataccaactgagctaaactcacgag 34464473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 35685083 - 35685117
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| |||||||||||||    
T  35685083 atatattatgcattgtccttaccaactgagctaaa 35685117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 8387907 - 8387952
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| ||| |||| |||| ||||||||||    
T  8387907 atatattatgcattgtccttaccaattgagttaaactcacgagaac 8387952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 12124723 - 12124690
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  12124723 atatattatgcattgtccttaccaactgagctaa 12124690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 18231495 - 18231528
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  18231495 atatattatgcattgtccttaccaactgagctaa 18231528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 19179072 - 19179105
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  19179072 atatattatgcattgtccttaccaactgagctaa 19179105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 20120743 - 20120776
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  20120743 atatattatgcattgtccttaccaactgagctaa 20120776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 24593415 - 24593382
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  24593415 atatattatgcattgtccttaccaactgagctaa 24593382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 25186264 - 25186305
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacga 568  Q
    |||||||||||||||||| || ||||||||||||| ||||||    
T  25186264 atatattatgcattgtccatatcaactgagctaaactcacga 25186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 29350067 - 29350100
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||| |||||||||||||||||||    
T  29350067 atatattatgcattatccttaacaactgagctaa 29350100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 39068730 - 39068763
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  39068730 atatattatgcattgtccttatcaactgagctaa 39068763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 40099405 - 40099438
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  40099405 atatattatgcattgtccttaccaactgagctaa 40099438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 44496722 - 44496767
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  44496722 atatattatgtattgtccttaccaactgagctaagctcacgagaac 44496767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 239846 - 239804
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  239846 atatattatgcattgtccttaccaactgagctaaactcacgag 239804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 16133087 - 16133133
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaacg 573  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||    
T  16133087 atatattatgcattgtccttaccaactgagctaagctcacgagaacg 16133133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 17672319 - 17672367
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  17672319 tatatatattatgcatcgtccttatcaactgagctaagctcacgagaac 17672367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 529 - 571
Target Start/End: Original strand, 6226328 - 6226370
Alignment:
Q  529 atattatgcattgtccttaacaactgagctaaaatcacgagaa 571  Q
    |||||| |||||||||||| ||||||||||||| |||||||||    
T  6226328 atattaggcattgtccttaccaactgagctaaattcacgagaa 6226370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 17862018 - 17861976
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  17862018 atatattatgcattgtccctaccaactgagctaaactcacgag 17861976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 561
Target Start/End: Complemental strand, 18147757 - 18147723
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| |||||||||||||    
T  18147757 atatattatgcattgtccttatcaactgagctaaa 18147723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 36321516 - 36321558
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  36321516 atatattatgcattgtccttaccaactgagctaagctcacgag 36321558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 40446022 - 40445980
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  40446022 atatattatgcattgtccttatcaactgagttaaactcacgag 40445980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 5846068 - 5846035
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  5846068 atatattatgcattgtccttaccaactgagctaa 5846035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 8545011 - 8545056
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| |||||||| |||  ||||||||||    
T  8545011 atatattatgcattgtccttatcaactgagttaagctcacgagaac 8545056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Complemental strand, 10199061 - 10199016
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| || ||||||||||||  |||||||    
T  10199061 tatatatattatgcattgtccataccaactgagctaagctcacgag 10199016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 11844460 - 11844493
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  11844460 atatattatgcattgtccttaccaactgagctaa 11844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 21309008 - 21308963
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  21309008 atatattatgcattgtccttaccaactgagttaaactcacgggaac 21308963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 21316921 - 21316876
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  21316921 atatattatgcattgtccttaccaactgagttaaactcacgggaac 21316876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 23118073 - 23118118
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||||||||| |||||||| |||  ||||||||||    
T  23118073 atatattatgcattgtccttatcaactgagttaagctcacgagaac 23118118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 561
Target Start/End: Original strand, 37054288 - 37054325
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| || |||||||||||||    
T  37054288 tatatatattatgcattgtccctaccaactgagctaaa 37054325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 39610363 - 39610408
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||||| || ||||||||||||  ||||||||||    
T  39610363 atatattatgcattgtccatatcaactgagctaagctcacgagaac 39610408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 567
Target Start/End: Original strand, 42208491 - 42208531
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  42208491 atatattatgcattgtccttaccaactgagctaaattcacg 42208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Original strand, 1244726 - 1244760
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||||||| ||||||||||||    
T  1244726 tatatattatgcattgtccttaccaactgagctaa 1244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 8717497 - 8717539
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  8717497 atatattatgcattgtccataccaactgagctaaactcacgag 8717539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 17704052 - 17704010
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  17704052 atatattatgcattgtccttaccaactgagctaagctcacgag 17704010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 8910003 - 8910036
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  8910003 atatattatgcattgtccttaccaactgagctaa 8910036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 559
Target Start/End: Complemental strand, 19488340 - 19488307
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagcta 559  Q
    |||||||||||||||||||||| |||||||||||    
T  19488340 tatatattatgcattgtccttaccaactgagcta 19488307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 19778104 - 19778071
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  19778104 atatattatgcattgtccttaccaactgagctaa 19778071  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 30623332 - 30623299
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  30623332 atatattatgcattgtccttaccaactgagctaa 30623299  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 35372123 - 35372160
Alignment:
Q  530 tattatgcattgtccttaacaactgagctaaaatcacg 567  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  35372123 tattatgcattgtccttatcaactgagctaaactcacg 35372160  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 37750021 - 37750066
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||| | || ||||||||||||| ||||||||||    
T  37750021 atatattatgcattgttcatatcaactgagctaaactcacgagaac 37750066  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 41162662 - 41162703
Alignment:
Q  529 atattatgcattgtccttaacaactgagctaaaatcacgaga 570  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  41162662 atattatgcattgtccttatcaactgagctaatctcacgaga 41162703  T

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Target: scaffold2055 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 560
Target Start/End: Complemental strand, 1090 - 1043
Alignment:
Q  513 cccgtaccttatatatatattatgcattgtccttaacaactgagctaa 560  Q
    |||| ||||| ||||||||||||| |||||||||| ||||||||||||    
T  1090 cccggaccttttatatatattatgtattgtccttaccaactgagctaa 1043  T

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Target: scaffold0180 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 572
Target Start/End: Complemental strand, 17768 - 17726
Alignment:
Q  530 tattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    ||||||||||||||| || ||||||||||||| ||||||||||    
T  17768 tattatgcattgtccataccaactgagctaaactcacgagaac 17726  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 1149091 - 1149133
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  1149091 atatattatgcattgtccttaccaactgagctaagctcacgag 1149133  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 4216421 - 4216463
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  4216421 atatattatgcattgtccttatcaactgagctaagttcacgag 4216463  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 560
Target Start/End: Complemental strand, 13992711 - 13992677
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||||||||||| ||||||||||||    
T  13992711 tatatattatgcattgtccttaccaactgagctaa 13992677  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 16980376 - 16980418
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  16980376 atatattatgcattgtccttaccaactgagctaagctcacgag 16980418  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 21331439 - 21331481
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    |||||||||||||||||| |||||||||||||||  |||||||    
T  21331439 atatattatgcattgtccataacaactgagctaagctcacgag 21331481  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 47099392 - 47099350
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||| |||| |||||||||||| |||||||    
T  47099392 atatattatgcattgtcgttaataactgagctaaactcacgag 47099350  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 52904165 - 52904207
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgag 569  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  52904165 atatattatgcattgtccttaccaactgagctaacctcacgag 52904207  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 54230121 - 54230155
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaa 561  Q
    ||||||||||||||||||||| |||||||||||||    
T  54230121 atatattatgcattgtccttaccaactgagctaaa 54230155  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 559
Target Start/End: Complemental strand, 2151104 - 2151067
Alignment:
Q  522 tatatatatattatgcattgtccttaacaactgagcta 559  Q
    ||||||||||||||||||||||| || |||||||||||    
T  2151104 tatatatatattatgcattgtccctaccaactgagcta 2151067  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 3755378 - 3755333
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||||||||||| || |||| |||||||| ||||||||||    
T  3755378 atatattatgcattgtccctaccaaccgagctaaactcacgagaac 3755333  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 5117247 - 5117202
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 572  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  5117247 atatattatgtattgtccttatcaactgagctaagctcacgagaac 5117202  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 8113584 - 8113617
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  8113584 atatattatgcattgtccttaccaactgagctaa 8113617  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 10926508 - 10926475
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  10926508 atatattatgcattgtccttaccaactgagctaa 10926475  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 30200865 - 30200832
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  30200865 atatattatgcattgtccttagcaactgagctaa 30200832  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 35191839 - 35191872
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  35191839 atatattatgcattgtccttaccaactgagctaa 35191872  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 559
Target Start/End: Original strand, 39822193 - 39822226
Alignment:
Q  526 tatatattatgcattgtccttaacaactgagcta 559  Q
    |||||||||||||||||||||| |||||||||||    
T  39822193 tatatattatgcattgtccttaccaactgagcta 39822226  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 45096065 - 45096032
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  45096065 atatattatgcattgtccttatcaactgagctaa 45096032  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 45254270 - 45254237
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  45254270 atatattatgcattgtccttaccaactgagctaa 45254237  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 46469316 - 46469283
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  46469316 atatattatgcattgtccttaccaactgagctaa 46469283  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 52119415 - 52119382
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    ||||||||||||||||||||| ||||||||||||    
T  52119415 atatattatgcattgtccttaccaactgagctaa 52119382  T

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Target: scaffold0524 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 561
Target Start/End: Complemental strand, 1276 - 1239
Alignment:
Q  524 tatatatattatgcattgtccttaacaactgagctaaa 561  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  1276 tatatagattatgcattgtccttaacaactgagttaaa 1239  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 91584 - 91617
Alignment:
Q  527 atatattatgcattgtccttaacaactgagctaa 560  Q
    |||||||||||||| |||||||||||||||||||    
T  91584 atatattatgcattatccttaacaactgagctaa 91617  T

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