View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731-Insertion-9 (Length: 516)
Name: NF4731-Insertion-9
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 516
Target Start/End: Original strand, 10842216 - 10842726
Alignment:
| Q |
8 |
ggcttatcatatttttcaaaccatgatcatacaaccaataattgaagaaggttggtgtcctatttatgttgtcact--ggcaagcctatctatactgaca |
105 |
Q |
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| T |
10842216 |
ggcttatcatatttttcaaaccatgatcatacaaccaataattgaagaagattggtgtcctatttatgttgtcactaaggcaagcctatctatactgaca |
10842315 |
T |
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| Q |
106 |
aagtatatggccattttgtttgggatgtagatcccaatatgtgcgaccaatggtgtgactaatggatgcatgatgatgaaattgatagagaaattatcct |
205 |
Q |
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| T |
10842316 |
aagtatatggccattttgtttgggatgtagatcccaatatgtgcgaccgatggtgtgactaatggatgcatgatgatgaaattgatagagaaattatcct |
10842415 |
T |
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| Q |
206 |
cccttaaaagaagaagaaatgggtgtgtagaccatctcatccaccacagagaaaatttgaccctaataatggtgcatggataggaatttataagnnnnnn |
305 |
Q |
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| T |
10842416 |
cccttaaaagaagaagaaatgggtgtgtagaccatctcatccaccacagagaaaatttgaccctaataatggtgcatggataggaatttataagaaaaaa |
10842515 |
T |
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| Q |
306 |
ncactgaaccaatcccttgaatcatgttctcagcttcaaattataaccaacatttccctgctctagaaagaaaaatcgaccccatcactaacagatcatc |
405 |
Q |
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| T |
10842516 |
acactgaaccaatcccttgaatcatgttctcagcttcaaattgtaaccaacatttccctgctctagaaagaaaaatcgaccccatcactaacagatcatc |
10842615 |
T |
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| Q |
406 |
caaacctttcatacaaccaaatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaattggaaatctaaaagtattgtt |
505 |
Q |
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| T |
10842616 |
caaaccttttatacaaccaaatgaagtttagtctgatggaaaacttaatccttcaactcaagttgaggaagttctaaattggaaatctaaaagtattgtt |
10842715 |
T |
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| Q |
506 |
tctcaaaatga |
516 |
Q |
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| T |
10842716 |
tctcaaaatga |
10842726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 12347817 - 12347919
Alignment:
| Q |
384 |
accccatcactaacagatcatccaaacctttcatacaaccaaatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaa |
483 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||||||||||| || | ||| ||||||||||||| | ||| |||| ||| || ||| |||| |
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| T |
12347817 |
acccaatcacaaacagatcatccaaaccaatcatacaaccaaatgaagtccagccagat-gaaaacttaaaccgttaacccaagctgaagaggttttaaa |
12347915 |
T |
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| Q |
484 |
ttgg |
487 |
Q |
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| T |
12347916 |
ttgg |
12347919 |
T |
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