View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_12 (Length: 370)
Name: NF4731_high_12
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 30783596 - 30783879
Alignment:
| Q |
19 |
tatatcattaaatttgtttctgattattttgttaaacttgtgtgcattagatggagtatataaaggctcaatgccaaccaaaggatggaaaattgctcgc |
118 |
Q |
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| T |
30783596 |
tatatcattaaatttgtttctgattattttgttaaacttgtgtgcattagatggagtatataaaggctcaatgccaaccaaaggatggaaaattgctcgc |
30783695 |
T |
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| Q |
119 |
aattggtcactcaatgggtggtattttgttgtatgcaatgctctcgcgttgttgtaagtccaactgatctgtcattttattttttctgcaacaattctgt |
218 |
Q |
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| T |
30783696 |
aattggtcactcaatgggtggtattttgttgtatgcaatgctctcgcgttgttgtaagtccaactgatctgtcattttattttttctgcaacaattctgt |
30783795 |
T |
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| Q |
219 |
aattataaggctgtgtttcttttcgatcatatgattcaatcatcaaatctatcaatnnnnnnnttggcttgcttttagtgcaag |
302 |
Q |
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| T |
30783796 |
aattataaggctgtgtttcttttcaatcatatgattcaatcatcaaatctatcaataaaaaaattggcttgcttttagtgcaag |
30783879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 30783902 - 30783962
Alignment:
| Q |
302 |
gatgcttgtgtatttcgcttccataatcaatatttcatcttattctc--tataaatttcat |
360 |
Q |
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| T |
30783902 |
gatgcttgtgtatttcgcttccataatcaatatttcatcttattctctgtataaatttcat |
30783962 |
T |
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