View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731_high_16 (Length: 318)

Name: NF4731_high_16
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731_high_16
NF4731_high_16
[»] chr4 (1 HSPs)
chr4 (15-318)||(24566947-24567250)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 24566947 - 24567250
Alignment:
Q  15 accatcatctatccatagtgacttgcactcagcattcttgactaaatgcatcttcctttatcggaactaaatcaatgattatagaacatggaagaaatct 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  24566947 accatcatctatccatagtgacttgcacttagcattcttgactaaatgcatcttcctttatcggaactaaatcaatgatgatagaacatgggagaaatct 24567046  T
Q  115 agtattttatggaatgtctatgttattgctcaataataataataatttataaaatattgaacgtgtagagatagggaacaaattaggttaacagctagcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24567047 agtattttatggaatgtctatgttattgctcaataataataataatttataaaatattgaacgtgtagagatagggaacaaattaggttaacagctagcc 24567146  T
Q  215 aatgcttggatctcgtaataccaggcaatttgcagcaccacgtgcacgcacacaccttttgtgaacaagtttttggcaagtgactaaactgtatatttga 314  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  24567147 aatgcttggatctcgtaacaccaggcaatttgcagcaccacgtgcacacacacaccttttgtgaacaagttattagcaagtgactaaactctatatttga 24567246  T
Q  315 tatt 318  Q
    ||||    
T  24567247 tatt 24567250  T

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