View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_18 (Length: 285)
Name: NF4731_high_18
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 37129767 - 37129511
Alignment:
| Q |
18 |
gctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacaca |
117 |
Q |
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| T |
37129767 |
gctacaacctattccttcccatgcacagcaaccatcacttttactgtcccaagattgcaaaaggttagagtcatccaacacaaagcttgccttcaactca |
37129668 |
T |
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| Q |
118 |
aggagagcatgtctctccttctctatgcaagcaacatgttttgcagcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaa |
217 |
Q |
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| T |
37129667 |
aggagagcatgtctctccttctgtatgcaagcaacatgttttgccgcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaa |
37129568 |
T |
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| Q |
218 |
caaagattgctccaactataacttgatagtacatacaacaacactactcatcttcatct |
276 |
Q |
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| T |
37129567 |
caaagattgttccaac--taacttgatagtacatacaacaacactactcatcttcatct |
37129511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 38745548 - 38745420
Alignment:
| Q |
19 |
ctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacacaa |
118 |
Q |
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| T |
38745548 |
ctacaaccaattccttcccatgcacaacaatcatcactcttagtgtcccaagaaggtaaaaggtaagtgtcatccaacacaagacctgacttcaactcaa |
38745449 |
T |
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| Q |
119 |
ggagagcatgtctctccttctctatgcaa |
147 |
Q |
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| T |
38745448 |
ggagagcatgtctctccttctctatgcaa |
38745420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 37136913 - 37136770
Alignment:
| Q |
28 |
attccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcat |
127 |
Q |
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| T |
37136913 |
attccttcccatgcacaacaacaatcactcttactatcccaggtaggcaaaaggtaagtatcttcgacgacaaggcttgccttcaactcaaggagagcat |
37136814 |
T |
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| Q |
128 |
gtctctccttctctatgcaagcaacatgttttgcagcaacagct |
171 |
Q |
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| T |
37136813 |
gtctctccttctctatgcaaccaacatgtttttcagcaacagct |
37136770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 37162476 - 37162281
Alignment:
| Q |
52 |
tcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaa---- |
147 |
Q |
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||||| ||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
37162476 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
37162377 |
T |
|
| Q |
148 |
-----------gcaacatgttttgcagcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgctccaacta |
235 |
Q |
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| T |
37162376 |
cagaaacagaggcaacatgttttgcatcaa---ccacagctccataatagttggacaaaagaaagccgaactgcaacagaacaaagattgctccaacta |
37162281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 37144055 - 37143936
Alignment:
| Q |
28 |
attccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacacaaggagagcat |
127 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||| ||||||||| || || || ||||| | |||| |||||| | |||||||||||| |
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| T |
37144055 |
attccttcccatgcacaacaaccatcaatcttactgtcccaagtaggcaaaagagaagtgttatataacaccatgctttccttcagctcaaggagagcat |
37143956 |
T |
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| Q |
128 |
gtctctccttctctatgcaa |
147 |
Q |
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||||||| |||||| ||||| |
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| T |
37143955 |
gtctctcattctctttgcaa |
37143936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 35144999 - 35145138
Alignment:
| Q |
96 |
cacaaggcttgccttcaacacaaggagagcatgtctctccttctctatgcaagc------aacatgttttgcagcaacagctacaactccagagtagttg |
189 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||| | |||||||||| | |||||| |
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| T |
35144999 |
cacaaggccagccttcaactgtaggagaccatgtctctccttctctatgcaacctaaaccaacatgttttgcaac------tacaactccacaatagttg |
35145092 |
T |
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| Q |
190 |
gagaaaagaaggtcgaactgcaacacaacaaagattgctccaacta |
235 |
Q |
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| T |
35145093 |
gacaaaagaagctctaactgcaacaatacatagattgttccaacta |
35145138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 3025267 - 3025396
Alignment:
| Q |
18 |
gctacaacctattccttcccatgcacaacaaccatcacttttactgtcccaagaaggcaaaaggttagagtcatccaacacaaggcttgccttcaacaca |
117 |
Q |
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||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| || || |||||||||||| | || ||||||| || |
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| T |
3025267 |
gctacaaccaattccttcccatgcacaacaatcatcactcttactgtcccaagaaggtaaaaggtaagtgttatccaacacaagacctgacttcaactca |
3025366 |
T |
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| Q |
118 |
aggagagcatgtctctccttctctatgcaa |
147 |
Q |
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||||| || ||||||||||||||||||||| |
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| T |
3025367 |
aggagtgcttgtctctccttctctatgcaa |
3025396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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