View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_20 (Length: 262)
Name: NF4731_high_20
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38244698 - 38244485
Alignment:
| Q |
1 |
tggtccatgtttcttgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatcccca |
100 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38244698 |
tggtccatgtttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatcccta |
38244599 |
T |
|
| Q |
101 |
acatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaagtagtagaagtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
38244598 |
acatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtagtagaagtat |
38244499 |
T |
|
| Q |
201 |
tcattttcatcatc |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38244498 |
tcattttcatcatc |
38244485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 38260998 - 38260812
Alignment:
| Q |
1 |
tggtccatgtttcttgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatcccca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| || |||| |
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| T |
38260998 |
tggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacat-ccca |
38260900 |
T |
|
| Q |
101 |
acatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaag |
188 |
Q |
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||||||| ||| | | ||| || ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
38260899 |
acatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaag |
38260812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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