View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4731_high_23 (Length: 246)

Name: NF4731_high_23
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4731_high_23
NF4731_high_23
[»] chr4 (9 HSPs)
chr4 (1-224)||(7606164-7606387)
chr4 (1-224)||(7636992-7637218)
chr4 (1-224)||(7615178-7615401)
chr4 (28-224)||(7656132-7656328)
chr4 (1-96)||(7633443-7633541)
chr4 (1-65)||(7628708-7628772)
chr4 (171-224)||(7628616-7628669)
chr4 (108-143)||(39097703-39097738)
chr4 (109-155)||(39088014-39088060)
[»] chr7 (5 HSPs)
chr7 (34-224)||(8941738-8941927)
chr7 (1-224)||(8913561-8913780)
chr7 (1-224)||(8936069-8936283)
chr7 (1-96)||(8919086-8919184)
chr7 (1-40)||(8938845-8938884)
[»] chr3 (2 HSPs)
chr3 (121-224)||(40147453-40147556)
chr3 (121-224)||(8102383-8102486)
[»] chr6 (1 HSPs)
chr6 (112-222)||(6500429-6500539)
[»] scaffold0190 (1 HSPs)
scaffold0190 (113-162)||(4452-4501)
[»] chr8 (1 HSPs)
chr8 (108-162)||(15745016-15745070)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7606387 - 7606164
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606387 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 7606288  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606287 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 7606188  T
Q  201 aaatgtatttgctggaatagaaga 224  Q
    ||||||||||||||||||||||||    
T  7606187 aaatgtatttgctggaatagaaga 7606164  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7637218 - 7636992
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt 97  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||    ||||   || |||||||    
T  7637218 attgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatt 7637119  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||| |    
T  7637118 tcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggact 7637019  T
Q  198 tgtaaatgtatttgctggaatagaaga 224  Q
    | | |  |||||||| |||||||||||    
T  7637018 tattacggtatttgccggaatagaaga 7636992  T

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Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7615401 - 7615178
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  | ||| |||| | || ||||||||||    
T  7615401 attgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacatggcaaaaaataatttca 7615302  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||||||||  ||||||| || |    
T  7615301 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttat 7615202  T
Q  201 aaatgtatttgctggaatagaaga 224  Q
     |  || |||||||||||||||||    
T  7615201 tacggtttttgctggaatagaaga 7615178  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 7656132 - 7656328
Alignment:
Q  28 aagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttg 127  Q
    |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| ||  || ||| |||||  |  ||||||| |||||||||  |||||    
T  7656132 aagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagtttg 7656231  T
Q  128 atgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga 224  Q
    ||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| ||||||||| ||   ||  |||||||||||||||||    
T  7656232 atgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaaga 7656328  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7633541 - 7633443
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| |||||||||||||||||||||   ||||||||| ||||||||||||||||||||||| |||||||||||    
T  7633541 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagcatgaccaataataat 7633443  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7628772 - 7628708
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt 65  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  7628772 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt 7628708  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 7628669 - 7628616
Alignment:
Q  171 tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga 224  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaaga 7628616  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatga 143  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39097738 tagtagttctccaaggtttgatgtttatggtaatga 39097703  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
Q  109 agtagttctccatggtttgatgtttatggtaatgatttcggatgggg 155  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||    
T  39088060 agtagttctccaaggtttgatgtttatgataatgattttggttgggg 39088014  T

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Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 8941738 - 8941927
Alignment:
Q  34 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8941738 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt 8941837  T
Q  134 atggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga 224  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8941838 atggtaatgatttcggatggggaaaacctatagcag-tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga 8941927  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8913561 - 8913780
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgct---agcatgtccaataataatt 97  Q
    |||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||   | ||||   || | |||||    
T  8913561 attgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaacatggtaaaaactaatt 8913660  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat 197  Q
    |||||||||||||||||||||||| |||||||||||||||||||       |||||||||| ||| | |||||||||||||||||||||||||||||| |    
T  8913661 tcatatccattagtagttctccatagtttgatgtttatggtaat-------gatggggaaagcctgtggcagttcgtagtggatataaaataaatggact 8913753  T
Q  198 tgtaaatgtatttgctggaatagaaga 224  Q
    | | |  |||||||  |||||||||||    
T  8913754 tattacagtatttgtcggaatagaaga 8913780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8936069 - 8936283
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||      || |||| | || || |||||||    
T  8936069 attgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacatgccaaaaaagaatttca 8936159  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| |||||||||||  ||||||| || |    
T  8936160 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttat 8936259  T
Q  201 aaatgtatttgctggaatagaaga 224  Q
     |  |||||||| |||||||||||    
T  8936260 tacagtatttgccggaatagaaga 8936283  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8919086 - 8919184
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| ||||||||||||||||||||   ||||||||||  |||||||||||||||||||||| |||||||||||    
T  8919086 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagcatgaccaataataat 8919184  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8938845 - 8938884
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8938845 attgcttcacacacggatgagaagttgaagaatcactatg 8938884  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 40147453 - 40147556
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag 220  Q
    |||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| ||||||  | | |||||||||||||| ||    
T  40147453 tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag 40147552  T
Q  221 aaga 224  Q
    ||||    
T  40147553 aaga 40147556  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 8102486 - 8102383
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag 220  Q
    ||||||||||||||||| ||| |||| ||||||||||||||  | |||||||| |||||| |||||  || |||| |  |   |||||||||||||||||    
T  8102486 tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag 8102387  T
Q  221 aaga 224  Q
    ||||    
T  8102386 aaga 8102383  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 6500539 - 6500429
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttg 211  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||  | ||| |||| |||| | |||||||| |||| || || | ||||||||    
T  6500539 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg 6500440  T
Q  212 ctggaatagaa 222  Q
    |||||| ||||    
T  6500439 ctggaaaagaa 6500429  T

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Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
Q  113 gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 162  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct 4452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 162  Q
    ||||||||| || ||||||||||||||||| |||||||| || ||||||||||||    
T  15745016 tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct 15745070  T

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