View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_3 (Length: 465)
Name: NF4731_high_3
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 4843382 - 4843798
Alignment:
| Q |
10 |
acatcatcaaacaagccatttatacgtttatattttagaagttattttgatgggatcgtaaaggatctttttcagcttaactagaggttatgagttccaa |
109 |
Q |
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| T |
4843382 |
acatcaccaaacaagccatttatacgtttatatgttagaagttatttggatgagatcgtaaaggatctttttcagcttaactagaggttatgagttccaa |
4843481 |
T |
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| Q |
110 |
tccacccctaagaatggaataatgttaaatctcttnnnnnnnnnnnnnnnttttgtcatccattatgatgctaatcagttcgaggaattagtctatgcag |
209 |
Q |
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| T |
4843482 |
tccaccgctaagaatgcaataatgttaaatctctt----gagagagagagttttgtcatccattatgatgctactcagttcgagagattagtctatgcag |
4843577 |
T |
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| Q |
210 |
ttgcatgcggatgatacttgattcacacatnnnnnnngttataaattatttactgccaaacaaaaagttatcgttatttcttnnnnnnnnnnnnnnnntt |
309 |
Q |
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| T |
4843578 |
ttgcatgcagatgatacttgattcacacataaaataagttataagttatttactggcaaacaaaaagttatcgttatttctt--aaataaataaaaaatt |
4843675 |
T |
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| Q |
310 |
atagttattcactataagcacaaaagttgatattgccaaaaagagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatccnnnnnnngttaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4843676 |
atagttattcactataagcacaaaagttgatattgccaaaaagagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatccaaaaaaagttaa |
4843775 |
T |
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| Q |
410 |
atacttctttgaccaagaccctc |
432 |
Q |
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| T |
4843776 |
atacttctttgaccaagaccctc |
4843798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 4813510 - 4813597
Alignment:
| Q |
312 |
agttattcactataagcacaaaagttgatattgccaaaa--agagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatcc |
397 |
Q |
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||||||||||||||||| |||| || ||| | |||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| |
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| T |
4813510 |
agttattcactataagctcaaatgtcgatctatccaaaagaagagttttagtgtgtaaattggcatgggaatgtgatgaatattatcc |
4813597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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