View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_30 (Length: 212)
Name: NF4731_high_30
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 47193272 - 47193458
Alignment:
| Q |
9 |
gcaaagagatcggtcgaggaggaggagggattgtttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcaggg |
108 |
Q |
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| T |
47193272 |
gcaaagagatcggtcgaggaggaggagggattgtttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcaggg |
47193371 |
T |
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| Q |
109 |
agaagctgaatttctagctgaaataagcacaattggtatgttgaaccatatgaatttaattgatatgtggggatattgtgttgaagg |
195 |
Q |
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| T |
47193372 |
agaagctgaatttctagctgaaataagcacaattggtatgttgaaccatatgaatttaattgatatgtggggatattgtgttgaagg |
47193458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 43 - 195
Target Start/End: Original strand, 9792406 - 9792558
Alignment:
| Q |
43 |
ttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcagggagaagctgaatttctagctgaaataagcacaatt |
142 |
Q |
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| T |
9792406 |
ttacaaagttacactcaacgattatcgtgttgctgctgttaaatgcttaaatgaagctcatcaagaagaagctaaatttctagcttaaataagtacaatt |
9792505 |
T |
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| Q |
143 |
ggtatgttgaaccatatgaatttaattgatatgtggggatattgtgttgaagg |
195 |
Q |
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| T |
9792506 |
ggtatgttgaaccataaaaatttaattgatatgtggggatattgtgttgaagg |
9792558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 18658897 - 18658790
Alignment:
| Q |
89 |
ttaaatgaagctcatcagggagaagctgaatttctagctgaaataagcacaattggtatgttgaaccatatgaatttaattgatatgtggggatattgtg |
188 |
Q |
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| T |
18658897 |
ttaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacggcttaaccacatgaacttgattgatatgtggggatattgtg |
18658798 |
T |
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| Q |
189 |
ttgaaggt |
196 |
Q |
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| T |
18658797 |
ctgaaggt |
18658790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 21130672 - 21130628
Alignment:
| Q |
152 |
aaccatatgaatttaattgatatgtggggatattgtgttgaaggt |
196 |
Q |
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| T |
21130672 |
aaccacatgaatttgattgaaatgtggggatattgtgttgaaggt |
21130628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 6609524 - 6609483
Alignment:
| Q |
119 |
tttctagctgaaataagcacaattggtatgttgaaccatatg |
160 |
Q |
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| T |
6609524 |
tttctagcttaaataagcaaaattggtatgttaaaccatatg |
6609483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 39132070 - 39132108
Alignment:
| Q |
158 |
atgaatttaattgatatgtggggatattgtgttgaaggt |
196 |
Q |
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| T |
39132070 |
atgaacttaattgaaatgtggggatattgtgttgaaggt |
39132108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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