View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_4 (Length: 464)
Name: NF4731_high_4
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 19888912 - 19888471
Alignment:
| Q |
17 |
acttcttattgctacttgaagtaaataatgtaacataatatgtgcatcatgagtcttgtagccagaaatttttctttcgccaagttgaacacaccttgaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19888912 |
acttcttattgctacttgaagtaaataatgtaacataatatgtgcatcatgagtcttgtagccacaaatttttctttcgccaagttgaacacaccttgaa |
19888813 |
T |
|
| Q |
117 |
atgtttgatgcacatcca-ctggtagttttgcattttttaaaacaccgcaaaaaatcgatttttcatttgtggtcatagagaaacatgcttttgcaaaaa |
215 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19888812 |
atgtttgatgcacatccatctggtagttttgcattttttaaaacaccacaaaaaatagatttttcatttgtggtcatagagaaacatgcttttgcaaaaa |
19888713 |
T |
|
| Q |
216 |
ctatatccttcccttgattgatctccttcggatgaagtttctttttaattcccatgtcttgtaaatccaaacgagactttccatgatcttttgtcatcct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19888712 |
ctatatccttcccttgattgatctccttcggatgaagtttctttctaattcccatgtcttgtaaatccaaacgagcctttccatgatcttttgtcatcct |
19888613 |
T |
|
| Q |
316 |
cggtatatccaacaaagttccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggc |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19888612 |
cggtatatccaacaaagttccgataatactatcgaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggc |
19888513 |
T |
|
| Q |
416 |
aactccaaaaagatggattttttcttccatggacctttgcta |
457 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
19888512 |
aactcaaaaaagatggattttttcttccatggaccattgcta |
19888471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 450
Target Start/End: Complemental strand, 19309174 - 19308751
Alignment:
| Q |
28 |
ctacttgaagtaaataatgtaacataatatgtgcatcatgagtcttgtagccagaaatttttctttcgccaagttgaacacaccttgaaatgtttgatgc |
127 |
Q |
| |
|
||||||||||||| ||||| | ||| | |||||||||||||||||| || || || ||||||||| ||| |||||||||||||||||||||| || |
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| T |
19309174 |
ctacttgaagtaagtaatgcatcatgaaatgtgcatcatgagtcttatatccgctaagttttctttcaggaaggagaacacaccttgaaatgtttgaagc |
19309075 |
T |
|
| Q |
128 |
acatcca-ctggtagttttgcattttttaaaacaccgcaaaaaatcgatttttcatttgtggtcatagagaaacatgcttttgcaaaaactatatccttc |
226 |
Q |
| |
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||| ||| |||||| |||||||||||| || ||| |||||| | | ||| ||||||| |||| || || || ||||||||||| |||| | ||| |
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| T |
19309074 |
acacccatctggtatttttgcatttttcaatacagaacaaaaagtagttttctcatttgcactcatggaaaagcaagcttttgcaaacactagcttcttt |
19308975 |
T |
|
| Q |
227 |
ccttgattgatctccttcggatgaagtttctttttaattcccatgtcttgtaaatccaaacgagactttccatgatcttttgtcatcctcggtatatcca |
326 |
Q |
| |
|
|| |||| || ||| || || |||||||||||| |||| ||||| |||||||| || ||||| | ||| |||||||||||||| | | || ||||||| |
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| T |
19308974 |
ccgtgatcgacctcttttgggtgaagtttctttctaatacccatctcttgtaagtctaaacgtgcttttgcatgatcttttgtctttcccgtgatatcca |
19308875 |
T |
|
| Q |
327 |
acaaagttccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggcaactccaaaaa |
426 |
Q |
| |
|
||||||| || || ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |
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| T |
19308874 |
acaaagtcccaattatactatcaaatatgtttttctctatgtgcatcacatcaagattatggcgtaaagtattgtgcttccaatatggtaactcaaaaaa |
19308775 |
T |
|
| Q |
427 |
gatggattttttcttccatggacc |
450 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
19308774 |
tattgattttttcttccatggacc |
19308751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 450
Target Start/End: Original strand, 19488329 - 19488444
Alignment:
| Q |
335 |
ccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggcaactccaaaaagatggatt |
434 |
Q |
| |
|
||||| ||| ||||| |||| || || ||||| ||||| ||||| | |||||||||||||| ||| | |||||||||||| || | | ||||||| || | |
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| T |
19488329 |
ccgattatattatcacaaatgttcttttctatatgcataacatctaaattatggcgcaaagaattgtccttccaatatggtaattgccaaaagatagact |
19488428 |
T |
|
| Q |
435 |
ttttcttccatggacc |
450 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
19488429 |
ttttcttccaaggacc |
19488444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 19488013 - 19488083
Alignment:
| Q |
20 |
tcttattgctacttgaagtaaataatgtaacataatatgtgcatcatgagtcttgtagccagaaatttttc |
90 |
Q |
| |
|
||||||||||||||| | || ||||| || |||||||| ||||||||| ||||||| ||||||| ||||| |
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| T |
19488013 |
tcttattgctacttgcaacaagtaatgcaatataatatgagcatcatgactcttgtacccagaaacttttc |
19488083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 297 - 449
Target Start/End: Complemental strand, 13251823 - 13251671
Alignment:
| Q |
297 |
catgatcttttgtcatcctcggtatatccaacaaagttccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagt |
396 |
Q |
| |
|
|||||| ||||||| | | ||| |||||||| ||||| || || ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
13251823 |
catgatattttgtctttcccggaatatccaataaagtcccaattatactatcaaatctgtttttctctatgtgcatcacatcaagattatggcgtaaagc |
13251724 |
T |
|
| Q |
397 |
attatgcttccaatatggcaactccaaaaagatggattttttcttccatggac |
449 |
Q |
| |
|
||| |||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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|
| T |
13251723 |
attgtgcttccaatatggtaactcaaaaaatattgattttttcttccatggac |
13251671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 450
Target Start/End: Original strand, 9823291 - 9823406
Alignment:
| Q |
335 |
ccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggcaactccaaaaagatggatt |
434 |
Q |
| |
|
||||| ||| ||||| |||| || || ||||| ||||| ||||| | |||||||||||||| ||| | |||||||||||| || | | ||||||| || | |
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|
| T |
9823291 |
ccgattatattatcacaaatgttcttttctatatgcataacatctaaattatggcgcaaagaattgtccttccaatatggtaattgccaaaagatagact |
9823390 |
T |
|
| Q |
435 |
ttttcttccatggacc |
450 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
9823391 |
ttttcttccatggacc |
9823406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 9822975 - 9823045
Alignment:
| Q |
20 |
tcttattgctacttgaagtaaataatgtaacataatatgtgcatcatgagtcttgtagccagaaatttttc |
90 |
Q |
| |
|
||||||||||||||| | || ||||| || |||||||| ||||||||| ||||||| ||||||| ||||| |
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|
| T |
9822975 |
tcttattgctacttgcaacaagtaatgcaatataatatgagcatcatgactcttgtacccagaaacttttc |
9823045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 450
Target Start/End: Complemental strand, 18449024 - 18448909
Alignment:
| Q |
335 |
ccgataatactatcaaaaatatttttctctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggcaactccaaaaagatggatt |
434 |
Q |
| |
|
||||| ||| ||||| |||| || || ||||| ||||| ||||| | |||||||||||||| ||| | |||||||||||| || | | ||||||| || | |
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|
| T |
18449024 |
ccgattatattatcacaaatgttcttttctatatgcataacatctaaattatggcgcaaagaattgtccttccaatatggtaattgccaaaagatagact |
18448925 |
T |
|
| Q |
435 |
ttttcttccatggacc |
450 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18448924 |
ttttcttccatggacc |
18448909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 21229246 - 21229158
Alignment:
| Q |
362 |
tctatgtgcatcacatcaagattatggcgcaaagtattatgcttccaatatggcaactccaaaaagatggattttttcttccatggacc |
450 |
Q |
| |
|
||||| ||||| ||||| | |||||||||||||| || | |||||||||||| || | | ||||||| || ||||||||||||||||| |
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|
| T |
21229246 |
tctatatgcataacatctaaattatggcgcaaagaatcgtccttccaatatggtaattgccaaaagatagactttttcttccatggacc |
21229158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 12921052 - 12921020
Alignment:
| Q |
355 |
atttttctctatgtgcatcacatcaagattatg |
387 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
12921052 |
atttctctctatgtgcatcacatcaagattatg |
12921020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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