View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_5 (Length: 442)
Name: NF4731_high_5
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 217 - 431
Target Start/End: Original strand, 27225486 - 27225698
Alignment:
| Q |
217 |
catggaaagatcctatgatattacaaccccataagattaataacctcgtgtcattgtttttgtttatatccaatccttgcaaatacaaaagatattattt |
316 |
Q |
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| T |
27225486 |
catggaaagatcctatgatattacaatcccataagattaataacctcttgtaattgtttttgttcatatccaatccttgcaaatacaaaa-ataatatct |
27225584 |
T |
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| Q |
317 |
tttaacctctgatttcaaatacagtctaataaaatcactccatatgatccaacaggatgccattaaagaataaaaacaaataattttaaatttaacaaat |
416 |
Q |
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| T |
27225585 |
tt-aacctccgatttcaaacacagtctaataaaatcactccatatgatccaacaagatgccattaaagaataaaaacaactaattttaaatttaacaaat |
27225683 |
T |
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| Q |
417 |
agtcatattcatctc |
431 |
Q |
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|||| |||||||| |
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| T |
27225684 |
gatcattttcatctc |
27225698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 27225215 - 27225405
Alignment:
| Q |
20 |
tggacaatgatcaaataatctagtacattcttttaccacacttctctnnnnnnnnnnnctcaaacctcccctttctctcctcattcgcccttaccaaata |
119 |
Q |
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| T |
27225215 |
tggacaatgatcaaataatctagtatattcttttgccacacttctctaaaaaaa----ctcaaacttccccattctctcctcgttttccatcaccaaatg |
27225310 |
T |
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| Q |
120 |
aaaatctcctacacaacaccaaagatccttcaccatcccttttttcttcaccaaaatatcaatccacattgacttttttcagccaaatcacatggg |
215 |
Q |
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| T |
27225311 |
aaaatctcctacacaacaccaaagatccttcaccatccctttcttcttcaccaaaatataaacccacattgac-tttttccgccaaatcacatggg |
27225405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 217 - 410
Target Start/End: Original strand, 27233421 - 27233616
Alignment:
| Q |
217 |
catggaaagatcctatgatattacaaccccataaga----ttaataacctcgtgtcattgtttttgtttatatccaatccttgcaaatacaaaagatatt |
312 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |||| ||||||||||||||| |||||||||| |
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| T |
27233421 |
catggaaagatcctatgatattacagtcccataagagtgattaataacctcttgtaattgtttttgttcatattcaatccttgcaaatataaaagatatt |
27233520 |
T |
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| Q |
313 |
attttttaacctctgatttcaaatacagtctaataaaatcactccatatgatccaacaggatgccattaaagaataaaaacaaataattttaaattta |
410 |
Q |
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| T |
27233521 |
-gtttttcacccccgatttcctacacaggctaataaaatcactccatatgatctaacaagatgacattaaagaacaaaaa-aactatttttaaattta |
27233616 |
T |
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